Wall clock time and date at job start Mon Mar 30 2020 00:33:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47482 * 2 1 4 4 C 1.53000 * 109.47060 * 180.02562 * 3 2 1 5 5 C 1.50703 * 109.46912 * 179.97438 * 4 3 2 6 6 O 1.21278 * 119.99985 * 0.02562 * 5 4 3 7 7 N 1.34777 * 120.00161 * 179.97438 * 5 4 3 8 8 C 1.46496 * 120.00271 * 179.97438 * 7 5 4 9 9 H 1.09003 * 110.43068 * 36.09196 * 8 7 5 10 10 C 1.54262 * 110.48851 * 273.55139 * 8 7 5 11 11 C 1.53872 * 106.59907 * 217.71052 * 10 8 7 12 12 C 1.54270 * 106.59965 * 0.02562 * 11 10 8 13 13 C 1.54888 * 110.48521 * 158.77163 * 8 7 5 14 14 H 1.08999 * 110.75811 * 38.31426 * 13 8 7 15 15 C 1.52999 * 110.76059 * 274.93671 * 13 8 7 16 16 N 1.46495 * 109.47279 * 175.00312 * 15 13 8 17 17 C 1.36942 * 120.00034 * 180.02562 * 16 15 13 18 18 H 1.07999 * 119.99708 * 0.02562 * 17 16 15 19 19 C 1.38809 * 119.99923 * 179.97438 * 17 16 15 20 20 N 1.31618 * 120.00214 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99937 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.47032 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.46946 * 119.99723 * 21 19 17 24 24 H 1.48499 * 109.47114 * 239.99926 * 21 19 17 25 25 H 1.09002 * 109.47103 * 300.00247 * 1 2 3 26 26 H 1.09001 * 109.47066 * 60.00169 * 1 2 3 27 27 H 1.08996 * 109.47747 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47103 * 239.99753 * 2 1 3 29 29 H 1.08998 * 109.46862 * 120.00565 * 2 1 3 30 30 H 1.09002 * 109.47153 * 59.99783 * 3 2 1 31 31 H 1.09001 * 109.46832 * 299.99974 * 3 2 1 32 32 H 1.09001 * 109.47194 * 299.99650 * 4 3 2 33 33 H 1.08992 * 109.47399 * 59.99823 * 4 3 2 34 34 H 0.97005 * 119.99463 * 0.02562 * 7 5 4 35 35 H 1.08998 * 110.03267 * 336.99266 * 10 8 7 36 36 H 1.08998 * 110.03456 * 98.37465 * 10 8 7 37 37 H 1.09004 * 110.03609 * 119.28378 * 11 10 8 38 38 H 1.09000 * 110.03610 * 240.71519 * 11 10 8 39 39 H 1.08993 * 110.48774 * 142.28931 * 12 11 10 40 40 H 1.09002 * 110.48234 * 264.80050 * 12 11 10 41 41 H 1.09000 * 109.46811 * 295.00083 * 15 13 8 42 42 H 1.08998 * 109.46653 * 54.99904 * 15 13 8 43 43 H 0.97006 * 120.00004 * 0.02562 * 16 15 13 44 44 H 0.97003 * 120.00323 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4423 -0.0006 5 6 4.0724 2.8632 -0.0013 6 8 3.2843 3.7850 -0.0008 7 7 5.3975 3.1094 -0.0014 8 6 5.8859 4.4906 -0.0026 9 1 5.2345 5.1250 0.5985 10 6 5.9816 5.0282 -1.4453 11 6 7.2458 5.9034 -1.5053 12 6 7.8745 5.8666 -0.0970 13 6 7.3417 4.5512 0.5229 14 1 7.9167 3.6963 0.1670 15 6 7.3641 4.6235 2.0510 16 7 8.7496 4.5594 2.5226 17 6 9.0190 4.6067 3.8644 18 1 8.2100 4.6909 4.5749 19 6 10.3318 4.5455 4.3113 20 7 11.3176 4.4423 3.4454 21 14 10.6993 4.6108 6.1416 22 1 9.4268 4.7271 6.8982 23 1 11.4053 3.3695 6.5493 24 1 11.5580 5.7869 6.4324 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8932 -0.5139 0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 3.9337 0.9284 0.8891 33 1 3.9329 0.9286 -0.8908 34 1 6.0278 2.3720 -0.0014 35 1 6.0678 4.1992 -2.1477 36 1 5.1011 5.6262 -1.6802 37 1 7.9455 5.4992 -2.2368 38 1 6.9792 6.9269 -1.7689 39 1 8.9621 5.8435 -0.1653 40 1 7.5481 6.7257 0.4890 41 1 6.9123 5.5604 2.3770 42 1 6.8010 3.7860 2.4626 43 1 9.4762 4.4834 1.8844 44 1 12.2350 4.3991 3.7577 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716053076.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:33:09 Heat of formation + Delta-G solvation = -66.035527 kcal Electronic energy + Delta-G solvation = -20543.722211 eV Core-core repulsion = 17494.562200 eV Total energy + Delta-G solvation = -3049.160011 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.96532 -38.04345 -35.49018 -34.44258 -33.53724 -31.40165 -30.74385 -28.58637 -27.55041 -24.90266 -24.19474 -22.14281 -21.41031 -20.61917 -20.14085 -19.42434 -17.27554 -16.65457 -16.43781 -16.06294 -15.01993 -14.61842 -14.44370 -14.29770 -13.92604 -13.67015 -13.28129 -13.19335 -13.00925 -12.83948 -12.50055 -12.14872 -11.94392 -11.50321 -11.38616 -11.25378 -11.18856 -10.94673 -10.90204 -10.77094 -10.73965 -10.44080 -10.31203 -10.22723 -9.96439 -9.75131 -9.66947 -8.89591 -8.87209 -6.91255 -5.76733 -3.04899 2.71862 3.26516 3.43220 3.49261 3.51322 4.54054 4.61181 4.67822 4.74281 4.79445 4.85897 5.04193 5.08425 5.11834 5.30930 5.46697 5.48984 5.56604 5.60941 5.61724 5.65172 5.69365 5.72611 5.78840 5.84022 5.91900 5.96093 6.06468 6.09370 6.18533 6.20448 6.28534 6.33456 6.51338 6.56973 6.64372 6.78976 6.92531 7.60717 7.71192 8.31906 8.42462 9.53816 10.11749 10.46814 11.46273 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.017385 B = 0.003816 C = 0.003247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1610.176156 B = 7335.958238 C = 8620.430163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.104 4.104 4 C -0.143 4.143 5 C 0.511 3.489 6 O -0.546 6.546 7 N -0.720 5.720 8 C 0.146 3.854 9 H 0.092 0.908 10 C -0.131 4.131 11 C -0.123 4.123 12 C -0.111 4.111 13 C -0.102 4.102 14 H 0.080 0.920 15 C 0.162 3.838 16 N -0.731 5.731 17 C -0.237 4.237 18 H 0.070 0.930 19 C -0.015 4.015 20 N -0.934 5.934 21 Si 0.906 3.094 22 H -0.280 1.280 23 H -0.292 1.292 24 H -0.292 1.292 25 H 0.055 0.945 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.093 0.907 33 H 0.091 0.909 34 H 0.401 0.599 35 H 0.063 0.937 36 H 0.064 0.936 37 H 0.061 0.939 38 H 0.061 0.939 39 H 0.073 0.927 40 H 0.069 0.931 41 H 0.020 0.980 42 H 0.018 0.982 43 H 0.384 0.616 44 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.300 -6.429 -11.703 20.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.142 4.142 4 C -0.183 4.183 5 C 0.298 3.702 6 O -0.423 6.423 7 N -0.371 5.371 8 C 0.041 3.959 9 H 0.111 0.889 10 C -0.170 4.170 11 C -0.161 4.161 12 C -0.149 4.149 13 C -0.121 4.121 14 H 0.098 0.902 15 C 0.034 3.966 16 N -0.375 5.375 17 C -0.368 4.368 18 H 0.088 0.912 19 C -0.211 4.211 20 N -0.583 5.583 21 Si 0.737 3.263 22 H -0.206 1.206 23 H -0.219 1.219 24 H -0.219 1.219 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.112 0.888 33 H 0.109 0.891 34 H 0.235 0.765 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.092 0.908 40 H 0.088 0.912 41 H 0.038 0.962 42 H 0.035 0.965 43 H 0.217 0.783 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -15.904 -5.746 -11.514 20.457 hybrid contribution 0.953 -0.381 0.813 1.309 sum -14.951 -6.127 -10.701 19.380 Atomic orbital electron populations 1.21759 0.95806 1.01432 1.01998 1.21554 0.96055 0.96730 1.01988 1.21362 0.92849 0.96439 1.03558 1.21715 0.98047 0.94137 1.04375 1.20726 0.82312 0.91630 0.75558 1.90682 1.55346 1.46601 1.49697 1.46123 1.06996 1.09012 1.74957 1.21886 0.95479 0.82383 0.96155 0.88948 1.22499 0.98304 0.99493 0.96723 1.22125 0.96432 0.99495 0.98051 1.22285 1.00897 0.97218 0.94521 1.22545 0.93532 0.98841 0.97179 0.90162 1.20637 0.88520 0.97833 0.89593 1.42343 1.01242 1.88929 1.04997 1.19282 0.91883 1.41975 0.83688 0.91222 1.24727 0.95623 1.03102 0.97608 1.69666 0.98578 1.57723 1.32338 0.86127 0.77825 0.77181 0.85146 1.20563 1.21897 1.21870 0.92636 0.92741 0.92864 0.92068 0.91920 0.91190 0.91354 0.88824 0.89110 0.76459 0.91851 0.91682 0.91974 0.92003 0.90799 0.91226 0.96227 0.96466 0.78286 0.93605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.91 37.15 0.37 -0.73 16 2 C -0.13 -0.95 5.93 -26.74 -0.16 -1.11 16 3 C -0.10 -0.99 4.50 -26.73 -0.12 -1.11 16 4 C -0.14 -1.32 5.70 -27.88 -0.16 -1.48 16 5 C 0.51 6.66 7.82 -10.98 -0.09 6.57 16 6 O -0.55 -9.16 15.69 5.56 0.09 -9.08 16 7 N -0.72 -8.92 5.11 -52.20 -0.27 -9.19 16 8 C 0.15 2.06 2.60 -66.28 -0.17 1.88 16 9 H 0.09 1.49 7.57 -51.93 -0.39 1.10 16 10 C -0.13 -1.65 6.53 -25.62 -0.17 -1.82 16 11 C -0.12 -1.52 6.80 -25.61 -0.17 -1.69 16 12 C -0.11 -1.68 6.20 -25.08 -0.16 -1.83 16 13 C -0.10 -1.60 2.50 -88.64 -0.22 -1.82 16 14 H 0.08 1.25 8.02 -51.93 -0.42 0.84 16 15 C 0.16 3.26 5.70 -4.05 -0.02 3.24 16 16 N -0.73 -18.35 5.52 -59.91 -0.33 -18.68 16 17 C -0.24 -6.67 9.99 -15.06 -0.15 -6.82 16 18 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 19 C -0.01 -0.43 5.50 -17.43 -0.10 -0.52 16 20 N -0.93 -28.14 13.06 55.49 0.72 -27.42 16 21 Si 0.91 22.50 29.55 -169.99 -5.02 17.47 16 22 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 23 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 24 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 25 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 27 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.76 8.10 -51.93 -0.42 0.34 16 31 H 0.07 0.71 8.10 -51.93 -0.42 0.29 16 32 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.40 4.17 8.53 -40.82 -0.35 3.82 16 35 H 0.06 0.75 8.04 -51.93 -0.42 0.33 16 36 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 40 H 0.07 1.10 7.94 -51.93 -0.41 0.69 16 41 H 0.02 0.42 7.99 -51.93 -0.41 0.00 16 42 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.38 10.03 7.67 -40.82 -0.31 9.71 16 44 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 355.76 15.07 5.36 5.36 Total: -1.00 -32.06 355.76 -8.94 -41.00 By element: Atomic # 1 Polarization: 15.94 SS G_CDS: -8.18 Total: 7.77 kcal Atomic # 6 Polarization: -5.93 SS G_CDS: -1.32 Total: -7.24 kcal Atomic # 7 Polarization: -55.41 SS G_CDS: 0.13 Total: -55.29 kcal Atomic # 8 Polarization: -9.16 SS G_CDS: 0.09 Total: -9.08 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.47 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -32.06 -8.94 -41.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716053076.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.032 kcal (2) G-P(sol) polarization free energy of solvation -32.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds