Wall clock time and date at job start Mon Mar 30 2020 00:44:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47276 * 2 1 4 4 C 1.52997 * 109.47276 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.47140 * 305.00180 * 4 3 2 6 6 C 1.53006 * 109.47164 * 65.00128 * 4 3 2 7 7 C 1.52999 * 109.47592 * 184.99834 * 4 3 2 8 8 C 1.50696 * 109.47750 * 174.99892 * 7 4 3 9 9 O 1.21286 * 119.99754 * 0.02562 * 8 7 4 10 10 N 1.34778 * 120.00246 * 180.02562 * 8 7 4 11 11 C 1.46502 * 119.99830 * 180.02562 * 10 8 7 12 12 C 1.52993 * 109.47126 * 180.02562 * 11 10 8 13 13 H 1.09010 * 112.96498 * 306.67801 * 12 11 10 14 14 C 1.53949 * 113.77362 * 174.99861 * 12 11 10 15 15 C 1.53940 * 86.29030 * 222.09045 * 14 12 11 16 16 N 1.47582 * 86.12098 * 23.60387 * 15 14 12 17 17 C 1.36933 * 134.49371 * 155.36156 * 16 15 14 18 18 H 1.08008 * 120.00182 * 180.02562 * 17 16 15 19 19 C 1.38817 * 119.99996 * 359.97438 * 17 16 15 20 20 N 1.31613 * 120.00007 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99760 * 180.02562 * 19 17 16 22 22 H 1.48493 * 109.47487 * 0.02562 * 21 19 17 23 23 H 1.48505 * 109.47038 * 120.00243 * 21 19 17 24 24 H 1.48500 * 109.47274 * 240.00078 * 21 19 17 25 25 H 1.08998 * 109.47097 * 59.99611 * 1 2 3 26 26 H 1.09000 * 109.47459 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47272 * 299.99952 * 1 2 3 28 28 H 1.09001 * 109.47272 * 240.00047 * 2 1 3 29 29 H 1.08998 * 109.47097 * 120.00389 * 2 1 3 30 30 H 1.09001 * 109.47456 * 59.99861 * 3 2 1 31 31 H 1.08998 * 109.47375 * 300.00219 * 3 2 1 32 32 H 1.09001 * 109.46801 * 180.02562 * 6 4 3 33 33 H 1.09001 * 109.46998 * 299.99705 * 6 4 3 34 34 H 1.09000 * 109.47050 * 59.99996 * 6 4 3 35 35 H 1.09002 * 109.47016 * 295.00471 * 7 4 3 36 36 H 1.09000 * 109.46709 * 55.00035 * 7 4 3 37 37 H 0.96996 * 119.99957 * 0.02562 * 10 8 7 38 38 H 1.09011 * 109.46658 * 299.99762 * 11 10 8 39 39 H 1.08990 * 109.47208 * 59.99531 * 11 10 8 40 40 H 1.08999 * 113.73269 * 336.43381 * 14 12 11 41 41 H 1.08996 * 113.74164 * 107.63274 * 14 12 11 42 42 H 1.08998 * 113.77635 * 137.90758 * 15 14 12 43 43 H 1.09007 * 113.76731 * 269.30622 * 15 14 12 44 44 H 0.97002 * 119.99946 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 1 3.9329 0.8531 0.8427 6 6 4.0805 0.8326 -1.3065 7 6 4.0800 2.8794 0.1263 8 6 5.5818 2.8705 0.2505 9 8 6.1850 1.8183 0.2391 10 7 6.2548 4.0317 0.3742 11 6 7.7148 4.0229 0.4944 12 6 8.2247 5.4598 0.6215 13 1 7.8695 6.1094 -0.1786 14 6 9.7396 5.5605 0.8761 15 6 9.3940 6.6611 1.8954 16 7 8.0612 6.0318 1.9721 17 6 7.0708 5.9939 2.9169 18 1 6.1609 5.4449 2.7238 19 6 7.2366 6.6601 4.1234 20 7 8.3456 7.3286 4.3590 21 14 5.8858 6.6077 5.4125 22 1 4.7505 5.7948 4.9072 23 1 6.4145 5.9978 6.6590 24 1 5.4188 7.9885 5.6966 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 1.6767 1.9564 0.8900 31 1 1.6767 1.9563 -0.8899 32 1 5.1706 0.8322 -1.3057 33 1 3.7173 -0.1912 -1.3960 34 1 3.7176 1.4220 -2.1485 35 1 3.7920 3.4459 -0.7592 36 1 3.6450 3.3432 1.0117 37 1 5.7724 4.8731 0.3837 38 1 8.0031 3.4558 1.3796 39 1 8.1495 3.5597 -0.3913 40 1 10.1694 4.6653 1.3256 41 1 10.3063 5.9183 0.0165 42 1 9.9642 6.5966 2.8220 43 1 9.3819 7.6650 1.4708 44 1 8.4613 7.7945 5.2019 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716645205.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:21 Heat of formation + Delta-G solvation = -15.635103 kcal Electronic energy + Delta-G solvation = -20817.594464 eV Core-core repulsion = 17770.619979 eV Total energy + Delta-G solvation = -3046.974485 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.60520 -38.02784 -36.68588 -33.99955 -32.73561 -32.18421 -28.91396 -27.90149 -26.75358 -26.56710 -23.37395 -22.59952 -21.69686 -20.31605 -19.76682 -19.03075 -17.06374 -16.35107 -15.76707 -15.51307 -15.35568 -14.85496 -14.39917 -14.03023 -13.72779 -13.58460 -13.51971 -13.19544 -12.82061 -12.35866 -12.18045 -11.83861 -11.64721 -11.53083 -11.42804 -11.10850 -11.03391 -10.99278 -10.76272 -10.71500 -10.61255 -10.53137 -10.48151 -9.99017 -9.75069 -9.58810 -9.19313 -8.81180 -8.51864 -6.90085 -5.77445 -3.09790 3.02539 3.36752 3.41662 3.44673 3.61566 4.42042 4.66699 4.77935 4.82378 5.06026 5.09226 5.14660 5.26627 5.39480 5.48017 5.49804 5.61245 5.61727 5.64206 5.70602 5.75927 5.78894 5.85461 5.91381 5.92342 6.06826 6.08631 6.11338 6.19874 6.33096 6.40358 6.42769 6.51428 6.62333 6.73690 6.95224 7.24329 7.41014 7.58777 7.95737 7.97799 8.64040 9.03485 9.70282 10.58844 11.39431 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.018264 B = 0.004443 C = 0.003676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.677350 B = 6300.565834 C = 7615.016382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.116 4.116 4 C -0.075 4.075 5 H 0.077 0.923 6 C -0.152 4.152 7 C -0.139 4.139 8 C 0.509 3.491 9 O -0.550 6.550 10 N -0.716 5.716 11 C 0.124 3.876 12 C 0.126 3.874 13 H 0.049 0.951 14 C -0.156 4.156 15 C 0.158 3.842 16 N -0.603 5.603 17 C -0.218 4.218 18 H 0.079 0.921 19 C -0.008 4.008 20 N -0.920 5.920 21 Si 0.908 3.092 22 H -0.280 1.280 23 H -0.290 1.290 24 H -0.291 1.291 25 H 0.052 0.948 26 H 0.051 0.949 27 H 0.053 0.947 28 H 0.064 0.936 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.075 0.925 33 H 0.051 0.949 34 H 0.044 0.956 35 H 0.089 0.911 36 H 0.092 0.908 37 H 0.402 0.598 38 H 0.070 0.930 39 H 0.058 0.942 40 H 0.076 0.924 41 H 0.053 0.947 42 H 0.073 0.927 43 H 0.026 0.974 44 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.478 -8.943 -11.079 17.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.154 4.154 4 C -0.094 4.094 5 H 0.096 0.904 6 C -0.209 4.209 7 C -0.179 4.179 8 C 0.296 3.704 9 O -0.429 6.429 10 N -0.366 5.366 11 C -0.001 4.001 12 C 0.018 3.982 13 H 0.066 0.934 14 C -0.195 4.195 15 C 0.033 3.967 16 N -0.329 5.329 17 C -0.346 4.346 18 H 0.097 0.903 19 C -0.205 4.205 20 N -0.567 5.567 21 Si 0.738 3.262 22 H -0.206 1.206 23 H -0.217 1.217 24 H -0.218 1.218 25 H 0.071 0.929 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.094 0.906 33 H 0.070 0.930 34 H 0.064 0.936 35 H 0.107 0.893 36 H 0.110 0.890 37 H 0.236 0.764 38 H 0.089 0.911 39 H 0.076 0.924 40 H 0.095 0.905 41 H 0.072 0.928 42 H 0.092 0.908 43 H 0.044 0.956 44 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -9.180 -9.608 -10.764 17.101 hybrid contribution -1.040 0.696 0.816 1.494 sum -10.220 -8.912 -9.948 16.818 Atomic orbital electron populations 1.21782 0.96173 1.01348 1.01686 1.21569 0.95431 0.97114 1.02223 1.21688 0.94926 0.96808 1.01934 1.20880 0.94194 0.94522 0.99779 0.90432 1.21983 1.03195 0.99870 0.95869 1.21759 0.92747 0.99363 1.04032 1.20611 0.89915 0.83806 0.76098 1.90623 1.70520 1.30935 1.50817 1.46024 1.08545 1.08725 1.73349 1.21717 0.78970 0.98471 1.00955 1.22502 0.94064 0.91651 0.89951 0.93398 1.23771 0.94763 1.01359 0.99618 1.22200 0.86128 0.92245 0.96098 1.46081 1.17557 1.58263 1.11011 1.18994 0.95644 1.26621 0.93311 0.90316 1.24763 0.97687 1.00054 0.97951 1.69827 1.25328 1.37148 1.24386 0.86118 0.81001 0.77160 0.81899 1.20570 1.21739 1.21801 0.92893 0.93002 0.92828 0.91767 0.92040 0.91974 0.92047 0.90642 0.93015 0.93640 0.89309 0.89005 0.76437 0.91126 0.92365 0.90537 0.92833 0.90826 0.95594 0.93751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.91 37.16 0.37 -0.83 16 2 C -0.13 -1.13 5.69 -26.73 -0.15 -1.28 16 3 C -0.12 -1.12 4.68 -26.73 -0.13 -1.24 16 4 C -0.07 -0.89 2.04 -90.62 -0.18 -1.07 16 5 H 0.08 1.06 7.96 -51.93 -0.41 0.65 16 6 C -0.15 -1.79 8.69 37.16 0.32 -1.47 16 7 C -0.14 -1.72 5.17 -27.89 -0.14 -1.86 16 8 C 0.51 8.31 7.55 -10.99 -0.08 8.23 16 9 O -0.55 -10.61 13.97 5.55 0.08 -10.53 16 10 N -0.72 -11.95 5.53 -60.30 -0.33 -12.28 16 11 C 0.12 2.24 5.54 -4.04 -0.02 2.22 16 12 C 0.13 2.42 4.33 -66.86 -0.29 2.13 16 13 H 0.05 0.88 8.14 -51.92 -0.42 0.46 16 14 C -0.16 -2.86 7.86 -25.81 -0.20 -3.07 16 15 C 0.16 3.64 7.51 -2.98 -0.02 3.62 16 16 N -0.60 -14.67 3.57 -170.72 -0.61 -15.28 16 17 C -0.22 -5.84 10.51 -15.06 -0.16 -6.00 16 18 H 0.08 2.02 7.80 -52.48 -0.41 1.62 16 19 C -0.01 -0.23 5.50 -17.43 -0.10 -0.32 16 20 N -0.92 -26.97 11.38 55.49 0.63 -26.34 16 21 Si 0.91 21.97 29.55 -169.99 -5.02 16.95 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 23 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 24 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 25 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.57 6.57 -51.93 -0.34 0.23 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.07 1.09 5.95 -51.93 -0.31 0.78 16 33 H 0.05 0.55 6.57 -51.93 -0.34 0.21 16 34 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 37 H 0.40 6.30 8.47 -40.82 -0.35 5.95 16 38 H 0.07 1.48 8.14 -51.92 -0.42 1.06 16 39 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 40 H 0.08 1.39 8.10 -51.93 -0.42 0.97 16 41 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.07 1.88 7.15 -51.93 -0.37 1.51 16 43 H 0.03 0.60 8.14 -51.92 -0.42 0.18 16 44 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 351.17 15.07 5.29 5.29 Total: -1.00 -30.94 351.17 -8.76 -39.70 By element: Atomic # 1 Polarization: 11.46 SS G_CDS: -8.00 Total: 3.46 kcal Atomic # 6 Polarization: -0.17 SS G_CDS: -0.79 Total: -0.96 kcal Atomic # 7 Polarization: -53.59 SS G_CDS: -0.31 Total: -53.91 kcal Atomic # 8 Polarization: -10.61 SS G_CDS: 0.08 Total: -10.53 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -30.94 -8.76 -39.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716645205.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.068 kcal (2) G-P(sol) polarization free energy of solvation -30.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds