Wall clock time and date at job start Mon Mar 30 2020 00:44:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47276 * 2 1 4 4 C 1.52997 * 109.47276 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.47140 * 305.00180 * 4 3 2 6 6 C 1.53006 * 109.47164 * 65.00128 * 4 3 2 7 7 C 1.52999 * 109.47592 * 184.99834 * 4 3 2 8 8 C 1.50696 * 109.47750 * 174.99892 * 7 4 3 9 9 O 1.21286 * 119.99754 * 0.02562 * 8 7 4 10 10 N 1.34778 * 120.00246 * 180.02562 * 8 7 4 11 11 C 1.46502 * 119.99830 * 180.02562 * 10 8 7 12 12 C 1.52993 * 109.47126 * 180.02562 * 11 10 8 13 13 H 1.09010 * 112.96498 * 306.67801 * 12 11 10 14 14 C 1.53949 * 113.77362 * 174.99861 * 12 11 10 15 15 C 1.53940 * 86.29030 * 222.09045 * 14 12 11 16 16 N 1.47582 * 86.12098 * 23.60387 * 15 14 12 17 17 C 1.36933 * 134.49371 * 155.36156 * 16 15 14 18 18 H 1.08008 * 120.00182 * 180.02562 * 17 16 15 19 19 C 1.38817 * 119.99996 * 359.97438 * 17 16 15 20 20 N 1.31613 * 120.00007 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99760 * 180.02562 * 19 17 16 22 22 H 1.48493 * 109.47487 * 0.02562 * 21 19 17 23 23 H 1.48505 * 109.47038 * 120.00243 * 21 19 17 24 24 H 1.48500 * 109.47274 * 240.00078 * 21 19 17 25 25 H 1.08998 * 109.47097 * 59.99611 * 1 2 3 26 26 H 1.09000 * 109.47459 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47272 * 299.99952 * 1 2 3 28 28 H 1.09001 * 109.47272 * 240.00047 * 2 1 3 29 29 H 1.08998 * 109.47097 * 120.00389 * 2 1 3 30 30 H 1.09001 * 109.47456 * 59.99861 * 3 2 1 31 31 H 1.08998 * 109.47375 * 300.00219 * 3 2 1 32 32 H 1.09001 * 109.46801 * 180.02562 * 6 4 3 33 33 H 1.09001 * 109.46998 * 299.99705 * 6 4 3 34 34 H 1.09000 * 109.47050 * 59.99996 * 6 4 3 35 35 H 1.09002 * 109.47016 * 295.00471 * 7 4 3 36 36 H 1.09000 * 109.46709 * 55.00035 * 7 4 3 37 37 H 0.96996 * 119.99957 * 0.02562 * 10 8 7 38 38 H 1.09011 * 109.46658 * 299.99762 * 11 10 8 39 39 H 1.08990 * 109.47208 * 59.99531 * 11 10 8 40 40 H 1.08999 * 113.73269 * 336.43381 * 14 12 11 41 41 H 1.08996 * 113.74164 * 107.63274 * 14 12 11 42 42 H 1.08998 * 113.77635 * 137.90758 * 15 14 12 43 43 H 1.09007 * 113.76731 * 269.30622 * 15 14 12 44 44 H 0.97002 * 119.99946 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 1 3.9329 0.8531 0.8427 6 6 4.0805 0.8326 -1.3065 7 6 4.0800 2.8794 0.1263 8 6 5.5818 2.8705 0.2505 9 8 6.1850 1.8183 0.2391 10 7 6.2548 4.0317 0.3742 11 6 7.7148 4.0229 0.4944 12 6 8.2247 5.4598 0.6215 13 1 7.8695 6.1094 -0.1786 14 6 9.7396 5.5605 0.8761 15 6 9.3940 6.6611 1.8954 16 7 8.0612 6.0318 1.9721 17 6 7.0708 5.9939 2.9169 18 1 6.1609 5.4449 2.7238 19 6 7.2366 6.6601 4.1234 20 7 8.3456 7.3286 4.3590 21 14 5.8858 6.6077 5.4125 22 1 4.7505 5.7948 4.9072 23 1 6.4145 5.9978 6.6590 24 1 5.4188 7.9885 5.6966 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 1.6767 1.9564 0.8900 31 1 1.6767 1.9563 -0.8899 32 1 5.1706 0.8322 -1.3057 33 1 3.7173 -0.1912 -1.3960 34 1 3.7176 1.4220 -2.1485 35 1 3.7920 3.4459 -0.7592 36 1 3.6450 3.3432 1.0117 37 1 5.7724 4.8731 0.3837 38 1 8.0031 3.4558 1.3796 39 1 8.1495 3.5597 -0.3913 40 1 10.1694 4.6653 1.3256 41 1 10.3063 5.9183 0.0165 42 1 9.9642 6.5966 2.8220 43 1 9.3819 7.6650 1.4708 44 1 8.4613 7.7945 5.2019 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716645205.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:20 Heat of formation + Delta-G solvation = -34.407022 kcal Electronic energy + Delta-G solvation = -20818.408476 eV Core-core repulsion = 17770.619979 eV Total energy + Delta-G solvation = -3047.788497 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.91880 -39.64775 -37.63569 -35.43494 -34.19451 -33.55575 -30.23207 -29.77786 -27.96543 -27.40615 -25.29006 -23.94289 -22.76505 -21.47508 -20.94263 -20.59216 -18.72453 -17.79043 -17.12793 -17.03167 -16.50341 -16.21721 -15.78996 -15.49434 -15.03961 -14.88684 -14.70670 -14.30518 -14.07139 -13.65020 -13.32502 -13.14835 -12.97050 -12.82124 -12.66104 -12.60054 -12.54777 -12.35217 -12.25497 -11.83791 -11.79447 -11.63770 -11.50754 -11.47571 -11.33814 -11.25879 -10.84214 -10.55521 -9.93456 -8.87745 -7.86120 -5.17718 1.43939 1.45493 1.54001 1.74663 2.32669 2.49139 3.34039 3.39854 3.79559 3.81960 3.98554 4.00520 4.14086 4.29377 4.29500 4.36310 4.44864 4.59286 4.64094 4.71999 4.73617 4.76848 4.82145 4.88911 4.95428 4.99636 5.05831 5.06902 5.11434 5.21518 5.26355 5.31537 5.34872 5.44635 5.50397 5.57403 5.60893 5.65550 5.76022 5.99001 6.66057 6.96488 7.35412 7.66485 8.61305 9.31109 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.018264 B = 0.004443 C = 0.003676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.677350 B = 6300.565834 C = 7615.016382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.127 4.127 3 C -0.109 4.109 4 C -0.073 4.073 5 H 0.052 0.948 6 C -0.147 4.147 7 C -0.133 4.133 8 C 0.504 3.496 9 O -0.583 6.583 10 N -0.717 5.717 11 C 0.133 3.867 12 C 0.133 3.867 13 H 0.072 0.928 14 C -0.132 4.132 15 C 0.149 3.851 16 N -0.630 5.630 17 C -0.211 4.211 18 H 0.087 0.913 19 C -0.073 4.073 20 N -0.956 5.956 21 Si 0.967 3.033 22 H -0.264 1.264 23 H -0.300 1.300 24 H -0.293 1.293 25 H 0.059 0.941 26 H 0.056 0.944 27 H 0.052 0.948 28 H 0.065 0.935 29 H 0.051 0.949 30 H 0.064 0.936 31 H 0.075 0.925 32 H 0.046 0.954 33 H 0.059 0.941 34 H 0.061 0.939 35 H 0.117 0.883 36 H 0.101 0.899 37 H 0.408 0.592 38 H 0.037 0.963 39 H 0.077 0.923 40 H 0.075 0.925 41 H 0.094 0.906 42 H 0.037 0.963 43 H 0.023 0.977 44 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.309 -9.328 -12.939 19.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.165 4.165 3 C -0.147 4.147 4 C -0.092 4.092 5 H 0.070 0.930 6 C -0.204 4.204 7 C -0.172 4.172 8 C 0.293 3.707 9 O -0.464 6.464 10 N -0.367 5.367 11 C 0.008 3.992 12 C 0.027 3.973 13 H 0.089 0.911 14 C -0.171 4.171 15 C 0.024 3.976 16 N -0.356 5.356 17 C -0.340 4.340 18 H 0.104 0.896 19 C -0.265 4.265 20 N -0.606 5.606 21 Si 0.797 3.203 22 H -0.188 1.188 23 H -0.228 1.228 24 H -0.221 1.221 25 H 0.078 0.922 26 H 0.075 0.925 27 H 0.072 0.928 28 H 0.084 0.916 29 H 0.070 0.930 30 H 0.082 0.918 31 H 0.094 0.906 32 H 0.065 0.935 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.135 0.865 36 H 0.119 0.881 37 H 0.243 0.757 38 H 0.055 0.945 39 H 0.095 0.905 40 H 0.094 0.906 41 H 0.112 0.888 42 H 0.056 0.944 43 H 0.041 0.959 44 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -11.035 -10.006 -12.665 19.552 hybrid contribution -0.431 0.767 1.319 1.586 sum -11.466 -9.239 -11.346 18.589 Atomic orbital electron populations 1.21765 0.95131 1.01873 1.02030 1.21572 0.96333 0.96665 1.01882 1.21634 0.92923 0.97398 1.02718 1.20860 0.95798 0.93789 0.98793 0.92983 1.21916 1.01221 1.00840 0.96469 1.21814 0.89471 1.00215 1.05712 1.21332 0.91520 0.82961 0.74915 1.90618 1.71588 1.32069 1.52169 1.46034 1.07966 1.09332 1.73361 1.21466 0.80245 0.97242 1.00233 1.22663 0.94615 0.92025 0.87957 0.91081 1.23568 0.94859 0.99346 0.99308 1.22168 0.85777 0.93643 0.96010 1.46433 1.17488 1.58767 1.12951 1.19370 0.96058 1.24861 0.93709 0.89554 1.25529 0.99784 1.01010 1.00205 1.70010 1.27226 1.38854 1.24484 0.85165 0.79110 0.76918 0.79152 1.18784 1.22786 1.22064 0.92167 0.92469 0.92842 0.91615 0.92974 0.91772 0.90599 0.93544 0.92205 0.91995 0.86492 0.88105 0.75703 0.94486 0.90520 0.90589 0.88781 0.94411 0.95937 0.94648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 9.91 71.98 0.71 -1.31 16 2 C -0.13 -2.04 5.69 30.59 0.17 -1.87 16 3 C -0.11 -1.83 4.68 30.59 0.14 -1.69 16 4 C -0.07 -1.62 2.04 -10.79 -0.02 -1.64 16 5 H 0.05 1.41 7.96 -2.39 -0.02 1.39 16 6 C -0.15 -3.24 8.69 71.98 0.63 -2.62 16 7 C -0.13 -2.97 5.17 29.85 0.15 -2.81 16 8 C 0.50 15.78 7.55 87.66 0.66 16.44 16 9 O -0.58 -22.36 13.97 -3.05 -0.04 -22.40 16 10 N -0.72 -22.64 5.53 -463.06 -2.56 -25.20 16 11 C 0.13 4.64 5.54 86.38 0.48 5.12 16 12 C 0.13 4.85 4.33 45.09 0.20 5.04 16 13 H 0.07 2.36 8.14 -2.38 -0.02 2.34 16 14 C -0.13 -4.58 7.86 31.25 0.25 -4.34 16 15 C 0.15 6.88 7.51 86.48 0.65 7.53 16 16 N -0.63 -30.37 3.57 -694.05 -2.48 -32.85 16 17 C -0.21 -11.27 10.51 84.04 0.88 -10.39 16 18 H 0.09 4.35 7.80 -2.91 -0.02 4.33 16 19 C -0.07 -4.10 5.50 84.86 0.47 -3.64 16 20 N -0.96 -57.59 11.38 21.65 0.25 -57.34 16 21 Si 0.97 45.58 29.55 68.60 2.03 47.61 16 22 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 23 H -0.30 -14.49 7.11 99.48 0.71 -13.78 16 24 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 25 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 26 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 27 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.07 1.03 6.57 -2.39 -0.02 1.01 16 29 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.05 1.31 5.95 -2.39 -0.01 1.29 16 33 H 0.06 1.19 6.57 -2.39 -0.02 1.17 16 34 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.12 1.99 8.14 -2.39 -0.02 1.97 16 36 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 37 H 0.41 11.85 8.47 -92.71 -0.79 11.06 16 38 H 0.04 1.54 8.14 -2.38 -0.02 1.52 16 39 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 40 H 0.08 2.66 8.10 -2.39 -0.02 2.64 16 41 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 42 H 0.04 1.99 7.15 -2.39 -0.02 1.98 16 43 H 0.02 1.05 8.14 -2.38 -0.02 1.03 16 44 H 0.24 14.44 8.31 -92.71 -0.77 13.67 16 Total: -1.00 -68.13 351.17 2.73 -65.40 By element: Atomic # 1 Polarization: 20.78 SS G_CDS: 0.17 Total: 20.95 kcal Atomic # 6 Polarization: -1.54 SS G_CDS: 5.37 Total: 3.83 kcal Atomic # 7 Polarization: -110.60 SS G_CDS: -4.79 Total: -115.39 kcal Atomic # 8 Polarization: -22.36 SS G_CDS: -0.04 Total: -22.40 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.61 kcal Total: -68.13 2.73 -65.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716645205.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.995 kcal (2) G-P(sol) polarization free energy of solvation -68.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds