Wall clock time and date at job start Mon Mar 30 2020 00:28:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.47399 * 2 1 4 4 C 1.52997 * 109.47151 * 180.02562 * 3 2 1 5 5 C 1.50709 * 109.47027 * 179.97438 * 4 3 2 6 6 O 1.21283 * 120.00017 * 359.97438 * 5 4 3 7 7 N 1.34778 * 119.99893 * 180.02562 * 5 4 3 8 8 C 1.46926 * 120.63158 * 354.20768 * 7 5 4 9 9 C 1.53191 * 108.77390 * 126.41556 * 8 7 5 10 10 C 1.53045 * 109.31271 * 54.63494 * 9 8 7 11 11 H 1.09000 * 109.45695 * 178.62554 * 10 9 8 12 12 N 1.46500 * 109.45494 * 58.65599 * 10 9 8 13 13 C 1.36933 * 120.00019 * 84.97620 * 12 10 9 14 14 H 1.07998 * 120.00327 * 359.97438 * 13 12 10 15 15 C 1.38820 * 119.99974 * 179.97438 * 13 12 10 16 16 N 1.31614 * 119.99796 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 119.99924 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.46982 * 90.00481 * 17 15 13 19 19 H 1.48495 * 109.47324 * 330.00385 * 17 15 13 20 20 H 1.48503 * 109.46909 * 210.00257 * 17 15 13 21 21 C 1.53040 * 109.52674 * 298.64334 * 10 9 8 22 22 C 1.46926 * 120.62824 * 174.23600 * 7 5 4 23 23 H 1.08999 * 109.58566 * 113.79509 * 22 7 5 24 24 C 1.52999 * 109.58554 * 353.37228 * 22 7 5 25 25 H 1.08997 * 109.47506 * 60.00153 * 1 2 3 26 26 H 1.08997 * 109.47301 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47064 * 299.99862 * 1 2 3 28 28 H 1.09004 * 109.47432 * 239.99750 * 2 1 3 29 29 H 1.09000 * 109.47047 * 120.00073 * 2 1 3 30 30 H 1.09005 * 109.46900 * 60.00037 * 3 2 1 31 31 H 1.09000 * 109.47080 * 300.00053 * 3 2 1 32 32 H 1.08995 * 109.47415 * 60.00209 * 4 3 2 33 33 H 1.08997 * 109.47409 * 299.99636 * 4 3 2 34 34 H 1.08999 * 109.58696 * 6.62662 * 8 7 5 35 35 H 1.08997 * 109.58675 * 246.20132 * 8 7 5 36 36 H 1.09003 * 109.49566 * 294.68478 * 9 8 7 37 37 H 1.08999 * 109.52521 * 174.60194 * 9 8 7 38 38 H 0.97001 * 119.99917 * 264.96904 * 12 10 9 39 39 H 0.97004 * 120.00272 * 0.02562 * 16 15 13 40 40 H 1.08991 * 109.49769 * 181.31348 * 21 10 9 41 41 H 1.09004 * 109.49345 * 301.40434 * 21 10 9 42 42 H 1.08993 * 109.47633 * 65.79777 * 24 22 7 43 43 H 1.09001 * 109.46784 * 185.80207 * 24 22 7 44 44 H 1.08999 * 109.47085 * 305.79656 * 24 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 6 4.0724 2.8633 -0.0013 6 8 3.2843 3.7851 -0.0017 7 7 5.3975 3.1095 -0.0024 8 6 6.3634 2.0097 0.1245 9 6 7.3567 2.0891 -1.0390 10 6 7.9904 3.4818 -1.0694 11 1 8.7156 3.5331 -1.8815 12 7 8.6658 3.7384 0.2050 13 6 9.9489 3.3018 0.4000 14 1 10.4629 2.7679 -0.3856 15 6 10.5891 3.5455 1.6074 16 7 9.9625 4.1957 2.5650 17 14 12.3393 2.9493 1.8736 18 1 13.2923 4.0025 1.4404 19 1 12.5687 1.7166 1.0780 20 1 12.5481 2.6548 3.3141 21 6 6.9017 4.5344 -1.2906 22 6 5.9035 4.4829 -0.1300 23 1 6.4018 4.7761 0.7940 24 6 4.7391 5.4344 -0.4123 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 3.9329 0.9287 -0.8908 33 1 3.9337 0.9285 0.8891 34 1 5.8372 1.0556 0.0914 35 1 6.8992 2.1012 1.0692 36 1 6.8329 1.9071 -1.9775 37 1 8.1352 1.3380 -0.9053 38 1 8.2041 4.2178 0.9107 39 1 9.0533 4.5044 2.4271 40 1 7.3563 5.5240 -1.3354 41 1 6.3823 4.3294 -2.2267 42 1 4.0766 5.4646 0.4526 43 1 5.1263 6.4342 -0.6085 44 1 4.1848 5.0822 -1.2823 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716756555.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:28:31 Heat of formation + Delta-G solvation = -34.421156 kcal Electronic energy + Delta-G solvation = -21668.676971 eV Core-core repulsion = 18620.887862 eV Total energy + Delta-G solvation = -3047.789109 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.34665 -37.66081 -35.51416 -34.38251 -32.80567 -32.04448 -30.25387 -28.79672 -26.97127 -24.97737 -23.86059 -23.41683 -21.94763 -20.98273 -19.85874 -18.34024 -17.26748 -16.52801 -16.11216 -15.71165 -15.19363 -14.62950 -14.13483 -13.96732 -13.80716 -13.63775 -13.54950 -13.27936 -12.97842 -12.54709 -12.36478 -12.02855 -11.94093 -11.64741 -11.37612 -11.29066 -11.20120 -11.10769 -10.83440 -10.70294 -10.67420 -10.55356 -10.33457 -10.17276 -10.01388 -9.19606 -8.96980 -8.80016 -8.18618 -7.07423 -6.12889 -3.13484 2.85310 3.24416 3.49374 3.53691 3.67688 4.57124 4.64275 4.78556 4.81668 5.02431 5.17186 5.18593 5.24635 5.33532 5.40181 5.42980 5.52847 5.61147 5.64480 5.66723 5.68880 5.71694 5.79142 5.81017 5.94453 5.96573 6.05441 6.11150 6.14014 6.21953 6.25855 6.36957 6.42899 6.55318 6.65984 6.68870 6.74947 7.02131 7.74973 7.78510 8.45023 8.72018 9.18782 10.05261 10.20670 11.34910 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.026235 B = 0.004393 C = 0.004088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.016652 B = 6372.028120 C = 6847.106094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C -0.102 4.102 4 C -0.142 4.142 5 C 0.511 3.489 6 O -0.546 6.546 7 N -0.601 5.601 8 C 0.115 3.885 9 C -0.149 4.149 10 C 0.179 3.821 11 H 0.051 0.949 12 N -0.733 5.733 13 C -0.331 4.331 14 H 0.064 0.936 15 C -0.045 4.045 16 N -0.943 5.943 17 Si 1.081 2.919 18 H -0.296 1.296 19 H -0.295 1.295 20 H -0.288 1.288 21 C -0.134 4.134 22 C 0.145 3.855 23 H 0.073 0.927 24 C -0.133 4.133 25 H 0.053 0.947 26 H 0.052 0.948 27 H 0.054 0.946 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.072 0.928 35 H 0.080 0.920 36 H 0.049 0.951 37 H 0.073 0.927 38 H 0.366 0.634 39 H 0.254 0.746 40 H 0.072 0.928 41 H 0.061 0.939 42 H 0.075 0.925 43 H 0.040 0.960 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.813 -6.903 -7.099 16.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.163 4.163 3 C -0.140 4.140 4 C -0.182 4.182 5 C 0.300 3.700 6 O -0.425 6.425 7 N -0.334 5.334 8 C -0.008 4.008 9 C -0.190 4.190 10 C 0.069 3.931 11 H 0.069 0.931 12 N -0.377 5.377 13 C -0.462 4.462 14 H 0.082 0.918 15 C -0.242 4.242 16 N -0.589 5.589 17 Si 0.913 3.087 18 H -0.224 1.224 19 H -0.222 1.222 20 H -0.215 1.215 21 C -0.173 4.173 22 C 0.043 3.957 23 H 0.091 0.909 24 C -0.191 4.191 25 H 0.073 0.927 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.107 0.893 33 H 0.108 0.892 34 H 0.090 0.910 35 H 0.098 0.902 36 H 0.068 0.932 37 H 0.092 0.908 38 H 0.201 0.799 39 H 0.065 0.935 40 H 0.091 0.909 41 H 0.080 0.920 42 H 0.094 0.906 43 H 0.059 0.941 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -12.810 -6.585 -6.166 15.668 hybrid contribution -1.108 0.024 -0.953 1.462 sum -13.918 -6.562 -7.119 16.954 Atomic orbital electron populations 1.21755 0.95852 1.01365 1.01938 1.21555 0.95969 0.96851 1.01954 1.21356 0.93015 0.96280 1.03386 1.21759 0.97653 0.94784 1.04023 1.20643 0.81938 0.91424 0.76041 1.90703 1.55808 1.45274 1.50704 1.48229 1.05388 1.08197 1.71594 1.21704 0.90142 0.88132 1.00803 1.22494 0.98274 1.01776 0.96449 1.20122 0.91840 0.90907 0.90236 0.93099 1.42522 1.14109 1.68567 1.12525 1.20061 0.90841 1.33782 1.01485 0.91754 1.25738 1.05815 1.00272 0.92405 1.70859 1.13491 1.40420 1.34088 0.83207 0.74508 0.75311 0.75710 1.22389 1.22191 1.21453 1.22254 0.96770 1.00758 0.97549 1.21196 0.94775 0.80946 0.98816 0.90947 1.22175 0.96666 0.96532 1.03694 0.92749 0.92907 0.92707 0.92078 0.92007 0.91337 0.91416 0.89258 0.89223 0.90950 0.90188 0.93225 0.90803 0.79906 0.93451 0.90904 0.92016 0.90604 0.94107 0.92170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 9.91 37.15 0.37 -0.84 16 2 C -0.13 -1.09 5.93 -26.74 -0.16 -1.25 16 3 C -0.10 -1.11 4.50 -26.73 -0.12 -1.23 16 4 C -0.14 -1.63 4.06 -27.88 -0.11 -1.75 16 5 C 0.51 7.83 7.50 -10.98 -0.08 7.74 16 6 O -0.55 -9.58 11.55 5.55 0.06 -9.52 16 7 N -0.60 -9.61 2.97 -165.24 -0.49 -10.10 16 8 C 0.11 1.80 6.09 -3.71 -0.02 1.78 16 9 C -0.15 -2.46 5.78 -26.61 -0.15 -2.61 16 10 C 0.18 3.42 3.10 -67.89 -0.21 3.21 16 11 H 0.05 1.01 8.08 -51.93 -0.42 0.59 16 12 N -0.73 -17.34 4.31 -53.38 -0.23 -17.57 16 13 C -0.33 -8.88 9.93 -15.06 -0.15 -9.03 16 14 H 0.06 1.71 7.83 -52.49 -0.41 1.30 16 15 C -0.04 -1.26 5.50 -17.43 -0.10 -1.35 16 16 N -0.94 -28.54 13.70 55.49 0.76 -27.78 16 17 Si 1.08 25.42 29.92 -169.99 -5.09 20.33 16 18 H -0.30 -6.83 7.11 56.52 0.40 -6.43 16 19 H -0.30 -6.52 7.11 56.52 0.40 -6.12 16 20 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 21 C -0.13 -2.25 5.07 -26.63 -0.13 -2.39 16 22 C 0.15 2.48 3.19 -67.61 -0.22 2.26 16 23 H 0.07 1.39 6.64 -51.93 -0.34 1.04 16 24 C -0.13 -2.16 7.61 37.16 0.28 -1.87 16 25 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.82 8.10 -51.93 -0.42 0.40 16 31 H 0.07 0.79 8.10 -51.93 -0.42 0.37 16 32 H 0.09 0.91 7.93 -51.93 -0.41 0.50 16 33 H 0.09 0.95 7.71 -51.93 -0.40 0.55 16 34 H 0.07 0.92 5.93 -51.93 -0.31 0.61 16 35 H 0.08 1.50 7.74 -51.93 -0.40 1.10 16 36 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 38 H 0.37 9.06 4.89 -40.82 -0.20 8.86 16 39 H 0.25 7.61 6.77 -40.82 -0.28 7.33 16 40 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 41 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.08 1.32 6.54 -51.93 -0.34 0.98 16 43 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.06 1.00 6.96 -51.93 -0.36 0.63 16 LS Contribution 336.57 15.07 5.07 5.07 Total: -1.00 -30.38 336.57 -8.46 -38.83 By element: Atomic # 1 Polarization: 15.79 SS G_CDS: -7.74 Total: 8.05 kcal Atomic # 6 Polarization: -6.53 SS G_CDS: -0.81 Total: -7.33 kcal Atomic # 7 Polarization: -55.48 SS G_CDS: 0.04 Total: -55.44 kcal Atomic # 8 Polarization: -9.58 SS G_CDS: 0.06 Total: -9.52 kcal Atomic # 14 Polarization: 25.42 SS G_CDS: -5.09 Total: 20.33 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -30.38 -8.46 -38.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716756555.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.414 kcal (2) G-P(sol) polarization free energy of solvation -30.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds