Wall clock time and date at job start Mon Mar 30 2020 00:28:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.47399 * 2 1 4 4 C 1.52997 * 109.47151 * 180.02562 * 3 2 1 5 5 C 1.50709 * 109.47027 * 179.97438 * 4 3 2 6 6 O 1.21283 * 120.00017 * 359.97438 * 5 4 3 7 7 N 1.34778 * 119.99893 * 180.02562 * 5 4 3 8 8 C 1.46926 * 120.63158 * 354.20768 * 7 5 4 9 9 C 1.53191 * 108.77390 * 126.41556 * 8 7 5 10 10 C 1.53045 * 109.31271 * 54.63494 * 9 8 7 11 11 H 1.09000 * 109.45695 * 178.62554 * 10 9 8 12 12 N 1.46500 * 109.45494 * 58.65599 * 10 9 8 13 13 C 1.36933 * 120.00019 * 84.97620 * 12 10 9 14 14 H 1.07998 * 120.00327 * 359.97438 * 13 12 10 15 15 C 1.38820 * 119.99974 * 179.97438 * 13 12 10 16 16 N 1.31614 * 119.99796 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 119.99924 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.46982 * 90.00481 * 17 15 13 19 19 H 1.48495 * 109.47324 * 330.00385 * 17 15 13 20 20 H 1.48503 * 109.46909 * 210.00257 * 17 15 13 21 21 C 1.53040 * 109.52674 * 298.64334 * 10 9 8 22 22 C 1.46926 * 120.62824 * 174.23600 * 7 5 4 23 23 H 1.08999 * 109.58566 * 113.79509 * 22 7 5 24 24 C 1.52999 * 109.58554 * 353.37228 * 22 7 5 25 25 H 1.08997 * 109.47506 * 60.00153 * 1 2 3 26 26 H 1.08997 * 109.47301 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47064 * 299.99862 * 1 2 3 28 28 H 1.09004 * 109.47432 * 239.99750 * 2 1 3 29 29 H 1.09000 * 109.47047 * 120.00073 * 2 1 3 30 30 H 1.09005 * 109.46900 * 60.00037 * 3 2 1 31 31 H 1.09000 * 109.47080 * 300.00053 * 3 2 1 32 32 H 1.08995 * 109.47415 * 60.00209 * 4 3 2 33 33 H 1.08997 * 109.47409 * 299.99636 * 4 3 2 34 34 H 1.08999 * 109.58696 * 6.62662 * 8 7 5 35 35 H 1.08997 * 109.58675 * 246.20132 * 8 7 5 36 36 H 1.09003 * 109.49566 * 294.68478 * 9 8 7 37 37 H 1.08999 * 109.52521 * 174.60194 * 9 8 7 38 38 H 0.97001 * 119.99917 * 264.96904 * 12 10 9 39 39 H 0.97004 * 120.00272 * 0.02562 * 16 15 13 40 40 H 1.08991 * 109.49769 * 181.31348 * 21 10 9 41 41 H 1.09004 * 109.49345 * 301.40434 * 21 10 9 42 42 H 1.08993 * 109.47633 * 65.79777 * 24 22 7 43 43 H 1.09001 * 109.46784 * 185.80207 * 24 22 7 44 44 H 1.08999 * 109.47085 * 305.79656 * 24 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 6 4.0724 2.8633 -0.0013 6 8 3.2843 3.7851 -0.0017 7 7 5.3975 3.1095 -0.0024 8 6 6.3634 2.0097 0.1245 9 6 7.3567 2.0891 -1.0390 10 6 7.9904 3.4818 -1.0694 11 1 8.7156 3.5331 -1.8815 12 7 8.6658 3.7384 0.2050 13 6 9.9489 3.3018 0.4000 14 1 10.4629 2.7679 -0.3856 15 6 10.5891 3.5455 1.6074 16 7 9.9625 4.1957 2.5650 17 14 12.3393 2.9493 1.8736 18 1 13.2923 4.0025 1.4404 19 1 12.5687 1.7166 1.0780 20 1 12.5481 2.6548 3.3141 21 6 6.9017 4.5344 -1.2906 22 6 5.9035 4.4829 -0.1300 23 1 6.4018 4.7761 0.7940 24 6 4.7391 5.4344 -0.4123 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 3.9329 0.9287 -0.8908 33 1 3.9337 0.9285 0.8891 34 1 5.8372 1.0556 0.0914 35 1 6.8992 2.1012 1.0692 36 1 6.8329 1.9071 -1.9775 37 1 8.1352 1.3380 -0.9053 38 1 8.2041 4.2178 0.9107 39 1 9.0533 4.5044 2.4271 40 1 7.3563 5.5240 -1.3354 41 1 6.3823 4.3294 -2.2267 42 1 4.0766 5.4646 0.4526 43 1 5.1263 6.4342 -0.6085 44 1 4.1848 5.0822 -1.2823 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716756555.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:28:31 Heat of formation + Delta-G solvation = -51.586678 kcal Electronic energy + Delta-G solvation = -21669.421324 eV Core-core repulsion = 18620.887862 eV Total energy + Delta-G solvation = -3048.533462 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.63661 -39.05806 -36.43142 -36.05629 -34.12241 -33.72397 -31.20724 -30.51607 -28.37384 -25.99765 -25.53741 -25.06137 -23.11275 -21.90300 -21.20074 -19.80190 -19.14921 -17.74559 -17.34582 -16.91932 -16.67905 -16.00703 -15.69410 -15.42085 -15.14512 -14.87828 -14.66146 -14.44198 -14.39062 -13.69793 -13.42677 -13.36327 -13.15534 -13.12080 -12.72786 -12.64953 -12.25748 -12.21032 -12.09278 -12.00438 -11.88915 -11.85260 -11.78889 -11.64054 -11.44059 -11.16575 -10.90124 -10.07443 -9.55691 -9.07012 -8.33934 -5.27746 1.60117 1.65189 1.70011 1.83776 2.00358 2.73745 3.44104 3.50918 3.71490 3.85307 3.91390 3.93880 4.01143 4.06091 4.19503 4.27721 4.35412 4.42284 4.45696 4.56363 4.62302 4.66407 4.73253 4.82181 4.82519 4.93933 4.98359 5.00331 5.04874 5.11623 5.17095 5.18436 5.26085 5.30189 5.33466 5.39593 5.50692 5.66370 5.68114 6.51141 6.52836 7.13130 7.22179 8.04037 8.16504 9.17331 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.026235 B = 0.004393 C = 0.004088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.016652 B = 6372.028120 C = 6847.106094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C -0.098 4.098 4 C -0.136 4.136 5 C 0.505 3.495 6 O -0.571 6.571 7 N -0.603 5.603 8 C 0.121 3.879 9 C -0.140 4.140 10 C 0.170 3.830 11 H 0.045 0.955 12 N -0.744 5.744 13 C -0.320 4.320 14 H 0.068 0.932 15 C -0.107 4.107 16 N -0.979 5.979 17 Si 1.127 2.873 18 H -0.290 1.290 19 H -0.271 1.271 20 H -0.297 1.297 21 C -0.122 4.122 22 C 0.145 3.855 23 H 0.042 0.958 24 C -0.119 4.119 25 H 0.052 0.948 26 H 0.064 0.936 27 H 0.049 0.951 28 H 0.073 0.927 29 H 0.068 0.932 30 H 0.051 0.949 31 H 0.057 0.943 32 H 0.114 0.886 33 H 0.104 0.896 34 H 0.111 0.889 35 H 0.043 0.957 36 H 0.080 0.920 37 H 0.064 0.936 38 H 0.358 0.642 39 H 0.241 0.759 40 H 0.066 0.934 41 H 0.084 0.916 42 H 0.059 0.941 43 H 0.051 0.949 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.307 -8.860 -8.729 18.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.158 4.158 3 C -0.136 4.136 4 C -0.175 4.175 5 C 0.295 3.705 6 O -0.452 6.452 7 N -0.336 5.336 8 C -0.001 4.001 9 C -0.180 4.180 10 C 0.062 3.938 11 H 0.063 0.937 12 N -0.387 5.387 13 C -0.451 4.451 14 H 0.086 0.914 15 C -0.298 4.298 16 N -0.627 5.627 17 Si 0.953 3.047 18 H -0.217 1.217 19 H -0.196 1.196 20 H -0.224 1.224 21 C -0.161 4.161 22 C 0.042 3.958 23 H 0.060 0.940 24 C -0.176 4.176 25 H 0.071 0.929 26 H 0.083 0.917 27 H 0.068 0.932 28 H 0.091 0.909 29 H 0.087 0.913 30 H 0.069 0.931 31 H 0.076 0.924 32 H 0.132 0.868 33 H 0.122 0.878 34 H 0.129 0.871 35 H 0.062 0.938 36 H 0.099 0.901 37 H 0.082 0.918 38 H 0.191 0.809 39 H 0.051 0.949 40 H 0.084 0.916 41 H 0.103 0.897 42 H 0.078 0.922 43 H 0.069 0.931 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -13.334 -8.567 -7.854 17.688 hybrid contribution -1.030 0.662 -0.511 1.326 sum -14.363 -7.905 -8.365 18.405 Atomic orbital electron populations 1.21770 0.95553 1.02088 1.01664 1.21527 0.96239 0.95215 1.02855 1.21309 0.92602 0.97621 1.02065 1.21813 0.97918 0.92052 1.05753 1.21373 0.81214 0.92940 0.74928 1.90698 1.56234 1.46624 1.51631 1.48273 1.05918 1.07608 1.71809 1.21641 0.90144 0.89700 0.98653 1.22348 0.98260 0.99166 0.98244 1.20385 0.92295 0.93313 0.87836 0.93738 1.42691 1.13530 1.68498 1.13953 1.20378 0.91879 1.31863 1.01011 0.91408 1.27057 1.09108 1.00878 0.92718 1.70974 1.13283 1.43109 1.35368 0.82606 0.70758 0.75941 0.75353 1.21712 1.19568 1.22416 1.22125 0.95969 0.99692 0.98314 1.21071 0.95008 0.82198 0.97561 0.93999 1.22004 0.95863 0.96899 1.02817 0.92888 0.91678 0.93213 0.90859 0.91346 0.93060 0.92450 0.86836 0.87818 0.87070 0.93838 0.90102 0.91752 0.80889 0.94854 0.91581 0.89702 0.92220 0.93056 0.92195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.14 9.91 71.98 0.71 -1.43 16 2 C -0.12 -1.76 5.93 30.59 0.18 -1.58 16 3 C -0.10 -1.93 4.50 30.59 0.14 -1.79 16 4 C -0.14 -2.73 4.06 29.85 0.12 -2.61 16 5 C 0.50 14.68 7.50 87.66 0.66 15.34 16 6 O -0.57 -19.71 11.55 -3.04 -0.04 -19.75 16 7 N -0.60 -18.57 2.97 -795.07 -2.36 -20.94 16 8 C 0.12 3.59 6.09 86.36 0.53 4.12 16 9 C -0.14 -4.30 5.78 30.67 0.18 -4.12 16 10 C 0.17 6.34 3.10 45.02 0.14 6.48 16 11 H 0.04 1.72 8.08 -2.39 -0.02 1.70 16 12 N -0.74 -35.56 4.31 -322.80 -1.39 -36.95 16 13 C -0.32 -17.20 9.93 84.04 0.83 -16.37 16 14 H 0.07 3.54 7.83 -2.91 -0.02 3.52 16 15 C -0.11 -6.06 5.50 84.86 0.47 -5.59 16 16 N -0.98 -60.77 13.70 21.65 0.30 -60.48 16 17 Si 1.13 51.23 29.92 68.60 2.05 53.28 16 18 H -0.29 -12.76 7.11 99.48 0.71 -12.05 16 19 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 20 H -0.30 -13.86 7.11 99.48 0.71 -13.15 16 21 C -0.12 -3.98 5.07 30.66 0.16 -3.82 16 22 C 0.15 4.94 3.19 44.96 0.14 5.09 16 23 H 0.04 1.68 6.64 -2.39 -0.02 1.67 16 24 C -0.12 -3.80 7.61 71.98 0.55 -3.25 16 25 H 0.05 0.74 8.14 -2.39 -0.02 0.73 16 26 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.05 0.73 8.14 -2.38 -0.02 0.71 16 28 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.05 1.18 8.10 -2.38 -0.02 1.16 16 31 H 0.06 1.25 8.10 -2.39 -0.02 1.23 16 32 H 0.11 1.79 7.93 -2.39 -0.02 1.77 16 33 H 0.10 1.85 7.71 -2.39 -0.02 1.83 16 34 H 0.11 2.43 5.93 -2.39 -0.01 2.41 16 35 H 0.04 1.63 7.74 -2.39 -0.02 1.61 16 36 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 37 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 38 H 0.36 18.36 4.89 -92.71 -0.45 17.91 16 39 H 0.24 15.04 6.77 -92.71 -0.63 14.41 16 40 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 41 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 42 H 0.06 2.11 6.54 -2.39 -0.02 2.09 16 43 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 44 H 0.06 1.92 6.96 -2.39 -0.02 1.90 16 Total: -1.00 -66.56 336.57 4.01 -62.55 By element: Atomic # 1 Polarization: 31.16 SS G_CDS: 0.65 Total: 31.80 kcal Atomic # 6 Polarization: -14.33 SS G_CDS: 4.80 Total: -9.53 kcal Atomic # 7 Polarization: -114.90 SS G_CDS: -3.46 Total: -118.36 kcal Atomic # 8 Polarization: -19.71 SS G_CDS: -0.04 Total: -19.75 kcal Atomic # 14 Polarization: 51.23 SS G_CDS: 2.05 Total: 53.28 kcal Total: -66.56 4.01 -62.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716756555.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.968 kcal (2) G-P(sol) polarization free energy of solvation -66.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds