Wall clock time and date at job start Mon Mar 30 2020 00:28:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47286 * 2 1 4 4 C 1.52991 * 109.47118 * 180.02562 * 3 2 1 5 5 C 1.50698 * 109.47206 * 179.97438 * 4 3 2 6 6 O 1.21280 * 120.00141 * 359.97438 * 5 4 3 7 7 N 1.34778 * 120.00141 * 179.97438 * 5 4 3 8 8 C 1.46925 * 120.63287 * 5.68052 * 7 5 4 9 9 C 1.53187 * 108.77490 * 233.62762 * 8 7 5 10 10 C 1.53041 * 109.31528 * 305.36130 * 9 8 7 11 11 H 1.08997 * 109.44965 * 181.38227 * 10 9 8 12 12 N 1.46502 * 109.45786 * 301.34492 * 10 9 8 13 13 C 1.36926 * 120.00328 * 275.06414 * 12 10 9 14 14 H 1.08000 * 119.99785 * 0.02562 * 13 12 10 15 15 C 1.38815 * 120.00581 * 180.27424 * 13 12 10 16 16 N 1.31620 * 119.99302 * 359.73092 * 15 13 12 17 17 Si 1.86793 * 120.00507 * 179.72595 * 15 13 12 18 18 H 1.48497 * 109.47172 * 90.00142 * 17 15 13 19 19 H 1.48494 * 109.47308 * 210.00476 * 17 15 13 20 20 H 1.48507 * 109.46913 * 330.00388 * 17 15 13 21 21 C 1.53041 * 109.53524 * 61.36312 * 10 9 8 22 22 C 1.46929 * 120.63268 * 185.69573 * 7 5 4 23 23 H 1.08997 * 109.58903 * 246.16540 * 22 7 5 24 24 C 1.53007 * 109.70201 * 6.51670 * 22 7 5 25 25 H 1.08998 * 109.47470 * 60.00055 * 1 2 3 26 26 H 1.09003 * 109.47327 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46981 * 300.00221 * 1 2 3 28 28 H 1.09001 * 109.46657 * 240.00200 * 2 1 3 29 29 H 1.08999 * 109.47327 * 120.00481 * 2 1 3 30 30 H 1.08998 * 109.47291 * 59.99969 * 3 2 1 31 31 H 1.08998 * 109.46821 * 300.00343 * 3 2 1 32 32 H 1.09006 * 109.47750 * 59.99771 * 4 3 2 33 33 H 1.09008 * 109.47295 * 299.99683 * 4 3 2 34 34 H 1.08999 * 109.58559 * 353.41291 * 8 7 5 35 35 H 1.08999 * 109.58611 * 113.69500 * 8 7 5 36 36 H 1.09001 * 109.49798 * 185.40819 * 9 8 7 37 37 H 1.09002 * 109.50253 * 65.31530 * 9 8 7 38 38 H 0.97001 * 120.00002 * 95.06433 * 12 10 9 39 39 H 0.97004 * 119.99706 * 180.02562 * 16 15 13 40 40 H 1.09006 * 109.49610 * 58.59342 * 21 10 9 41 41 H 1.09000 * 109.49368 * 178.68410 * 21 10 9 42 42 H 1.08994 * 109.46800 * 173.84676 * 24 22 7 43 43 H 1.08996 * 109.46807 * 293.84454 * 24 22 7 44 44 H 1.08999 * 109.46749 * 53.84214 * 24 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4424 -0.0006 5 6 4.0723 2.8632 -0.0013 6 8 3.2843 3.7851 -0.0017 7 7 5.3974 3.1095 -0.0014 8 6 6.3633 2.0094 -0.1260 9 6 7.3565 2.0911 1.0374 10 6 7.9903 3.4838 1.0650 11 1 8.7155 3.5365 1.8770 12 7 8.6659 3.7379 -0.2099 13 6 9.9487 3.3001 -0.4042 14 1 10.4623 2.7671 0.3822 15 6 10.5908 3.5458 -1.6101 16 7 9.9647 4.1950 -2.5687 17 14 12.3434 2.9553 -1.8724 18 1 12.3237 1.5860 -2.4469 19 1 13.0408 3.8743 -2.8073 20 1 13.0592 2.9359 -0.5713 21 6 6.9019 4.5371 1.2841 22 6 5.9036 4.4831 0.1235 23 1 6.4020 4.7744 -0.8011 24 6 4.7410 5.4380 0.4021 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8932 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6766 1.9563 -0.8900 32 1 3.9330 0.9287 -0.8908 33 1 3.9337 0.9285 0.8892 34 1 5.8371 1.0554 -0.0910 35 1 6.8974 2.0975 -1.0721 36 1 8.1349 1.3397 0.9047 37 1 6.8328 1.9111 1.9763 38 1 8.2045 4.2162 -0.9164 39 1 10.4132 4.3664 -3.4115 40 1 6.3825 4.3341 2.2207 41 1 7.3569 5.5267 1.3270 42 1 5.1306 6.4361 0.6022 43 1 4.0828 5.4721 -0.4660 44 1 4.1814 5.0858 1.2687 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716756556.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:28:34 Heat of formation + Delta-G solvation = -35.195169 kcal Electronic energy + Delta-G solvation = -21616.217620 eV Core-core repulsion = 18568.394947 eV Total energy + Delta-G solvation = -3047.822673 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.25140 -37.54934 -35.46025 -34.14629 -32.70835 -31.89231 -30.20568 -29.01910 -26.95063 -24.92389 -23.93089 -23.40867 -21.87003 -20.91645 -19.70680 -18.15130 -17.21537 -16.44028 -16.02606 -15.62948 -15.00233 -14.48618 -13.99359 -13.93145 -13.82144 -13.61537 -13.48763 -13.18116 -12.68623 -12.48522 -12.31674 -11.96019 -11.91847 -11.53337 -11.32505 -11.16962 -11.11627 -11.06904 -10.92033 -10.78945 -10.65637 -10.57204 -10.40096 -10.23622 -9.93923 -9.64434 -8.95802 -8.72840 -8.08725 -7.00042 -5.80233 -3.09239 2.93150 3.33472 3.40410 3.46210 3.47784 4.56123 4.63213 4.83466 4.85337 5.07897 5.23749 5.24023 5.33785 5.41884 5.45324 5.51944 5.59875 5.62363 5.71338 5.72343 5.75963 5.80133 5.82774 5.92504 5.99823 6.03877 6.16073 6.18207 6.20805 6.30047 6.32866 6.46204 6.52661 6.64195 6.73723 6.80279 6.85640 7.11159 7.66894 7.84284 8.38233 8.53185 9.49577 10.06609 10.41548 11.42202 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.026164 B = 0.004375 C = 0.004076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.913416 B = 6398.454165 C = 6868.437952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C -0.102 4.102 4 C -0.142 4.142 5 C 0.510 3.490 6 O -0.547 6.547 7 N -0.600 5.600 8 C 0.114 3.886 9 C -0.149 4.149 10 C 0.173 3.827 11 H 0.050 0.950 12 N -0.722 5.722 13 C -0.239 4.239 14 H 0.070 0.930 15 C -0.012 4.012 16 N -0.932 5.932 17 Si 0.905 3.095 18 H -0.290 1.290 19 H -0.292 1.292 20 H -0.283 1.283 21 C -0.133 4.133 22 C 0.144 3.856 23 H 0.078 0.922 24 C -0.133 4.133 25 H 0.054 0.946 26 H 0.051 0.949 27 H 0.053 0.947 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.070 0.930 35 H 0.084 0.916 36 H 0.073 0.927 37 H 0.048 0.952 38 H 0.384 0.616 39 H 0.255 0.745 40 H 0.059 0.941 41 H 0.073 0.927 42 H 0.040 0.960 43 H 0.073 0.927 44 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.856 -6.571 6.682 16.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.163 4.163 3 C -0.140 4.140 4 C -0.182 4.182 5 C 0.299 3.701 6 O -0.427 6.427 7 N -0.333 5.333 8 C -0.008 4.008 9 C -0.190 4.190 10 C 0.063 3.937 11 H 0.068 0.932 12 N -0.365 5.365 13 C -0.371 4.371 14 H 0.088 0.912 15 C -0.209 4.209 16 N -0.580 5.580 17 Si 0.737 3.263 18 H -0.218 1.218 19 H -0.219 1.219 20 H -0.208 1.208 21 C -0.172 4.172 22 C 0.042 3.958 23 H 0.096 0.904 24 C -0.190 4.190 25 H 0.073 0.927 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.108 0.892 33 H 0.107 0.893 34 H 0.088 0.912 35 H 0.102 0.898 36 H 0.091 0.909 37 H 0.067 0.933 38 H 0.219 0.781 39 H 0.065 0.935 40 H 0.078 0.922 41 H 0.092 0.908 42 H 0.059 0.941 43 H 0.092 0.908 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -14.067 -6.128 6.684 16.737 hybrid contribution 1.124 -0.336 -0.466 1.262 sum -12.943 -6.464 6.218 15.747 Atomic orbital electron populations 1.21757 0.95896 1.01328 1.01930 1.21556 0.95927 0.96911 1.01935 1.21351 0.93106 0.96207 1.03369 1.21755 0.97569 0.94905 1.03991 1.20617 0.82004 0.91354 0.76132 1.90699 1.55830 1.45290 1.50831 1.48219 1.05323 1.08262 1.71446 1.21716 0.90145 0.87986 1.00995 1.22507 0.98300 1.01805 0.96416 1.20191 0.91990 0.90914 0.90600 0.93201 1.42516 1.13752 1.67918 1.12281 1.19232 0.89988 1.29366 0.98464 0.91214 1.24730 0.98360 1.01155 0.96613 1.69657 1.37028 1.45836 1.05516 0.86217 0.84737 0.77912 0.77462 1.21783 1.21853 1.20826 1.22235 0.96745 1.00770 0.97416 1.21222 0.94678 0.80779 0.99151 0.90408 1.22162 0.96721 0.96563 1.03564 0.92709 0.92944 0.92764 0.92020 0.92093 0.91434 0.91355 0.89244 0.89297 0.91156 0.89825 0.90874 0.93339 0.78124 0.93501 0.92218 0.90844 0.94127 0.90774 0.92261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.91 37.16 0.37 -0.85 16 2 C -0.13 -1.10 5.93 -26.73 -0.16 -1.26 16 3 C -0.10 -1.12 4.50 -26.74 -0.12 -1.24 16 4 C -0.14 -1.65 4.05 -27.89 -0.11 -1.76 16 5 C 0.51 7.89 7.50 -10.99 -0.08 7.81 16 6 O -0.55 -9.71 11.56 5.56 0.06 -9.64 16 7 N -0.60 -9.66 2.97 -165.22 -0.49 -10.15 16 8 C 0.11 1.79 6.09 -3.71 -0.02 1.77 16 9 C -0.15 -2.43 5.78 -26.61 -0.15 -2.59 16 10 C 0.17 3.27 3.10 -67.89 -0.21 3.06 16 11 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 12 N -0.72 -17.01 4.31 -53.39 -0.23 -17.24 16 13 C -0.24 -6.32 9.93 -15.06 -0.15 -6.47 16 14 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 15 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 16 N -0.93 -27.36 13.06 55.49 0.72 -26.63 16 17 Si 0.91 21.82 29.55 -169.99 -5.02 16.80 16 18 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 19 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 21 C -0.13 -2.23 5.07 -26.61 -0.13 -2.36 16 22 C 0.14 2.49 3.19 -67.60 -0.22 2.27 16 23 H 0.08 1.53 6.64 -51.93 -0.34 1.19 16 24 C -0.13 -2.17 7.61 37.16 0.28 -1.89 16 25 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.79 8.10 -51.93 -0.42 0.37 16 31 H 0.07 0.82 8.10 -51.93 -0.42 0.40 16 32 H 0.09 0.96 7.71 -51.93 -0.40 0.56 16 33 H 0.09 0.91 7.92 -51.92 -0.41 0.50 16 34 H 0.07 0.89 5.93 -51.93 -0.31 0.58 16 35 H 0.08 1.57 7.74 -51.93 -0.40 1.17 16 36 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 37 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.38 9.71 6.06 -40.82 -0.25 9.46 16 39 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 40 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 41 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 42 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 43 H 0.07 1.31 6.58 -51.93 -0.34 0.97 16 44 H 0.06 0.99 6.93 -51.93 -0.36 0.63 16 LS Contribution 338.31 15.07 5.10 5.10 Total: -1.00 -29.32 338.31 -8.51 -37.83 By element: Atomic # 1 Polarization: 15.74 SS G_CDS: -7.85 Total: 7.89 kcal Atomic # 6 Polarization: -3.15 SS G_CDS: -0.81 Total: -3.95 kcal Atomic # 7 Polarization: -54.03 SS G_CDS: 0.00 Total: -54.03 kcal Atomic # 8 Polarization: -9.71 SS G_CDS: 0.06 Total: -9.64 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -29.32 -8.51 -37.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716756556.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.637 kcal (2) G-P(sol) polarization free energy of solvation -29.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds