Wall clock time and date at job start Mon Mar 30 2020 00:28:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47286 * 2 1 4 4 C 1.52991 * 109.47118 * 180.02562 * 3 2 1 5 5 C 1.50698 * 109.47206 * 179.97438 * 4 3 2 6 6 O 1.21280 * 120.00141 * 359.97438 * 5 4 3 7 7 N 1.34778 * 120.00141 * 179.97438 * 5 4 3 8 8 C 1.46925 * 120.63287 * 5.68052 * 7 5 4 9 9 C 1.53187 * 108.77490 * 233.62762 * 8 7 5 10 10 C 1.53041 * 109.31528 * 305.36130 * 9 8 7 11 11 H 1.08997 * 109.44965 * 181.38227 * 10 9 8 12 12 N 1.46502 * 109.45786 * 301.34492 * 10 9 8 13 13 C 1.36926 * 120.00328 * 275.06414 * 12 10 9 14 14 H 1.08000 * 119.99785 * 0.02562 * 13 12 10 15 15 C 1.38815 * 120.00581 * 180.27424 * 13 12 10 16 16 N 1.31620 * 119.99302 * 359.73092 * 15 13 12 17 17 Si 1.86793 * 120.00507 * 179.72595 * 15 13 12 18 18 H 1.48497 * 109.47172 * 90.00142 * 17 15 13 19 19 H 1.48494 * 109.47308 * 210.00476 * 17 15 13 20 20 H 1.48507 * 109.46913 * 330.00388 * 17 15 13 21 21 C 1.53041 * 109.53524 * 61.36312 * 10 9 8 22 22 C 1.46929 * 120.63268 * 185.69573 * 7 5 4 23 23 H 1.08997 * 109.58903 * 246.16540 * 22 7 5 24 24 C 1.53007 * 109.70201 * 6.51670 * 22 7 5 25 25 H 1.08998 * 109.47470 * 60.00055 * 1 2 3 26 26 H 1.09003 * 109.47327 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46981 * 300.00221 * 1 2 3 28 28 H 1.09001 * 109.46657 * 240.00200 * 2 1 3 29 29 H 1.08999 * 109.47327 * 120.00481 * 2 1 3 30 30 H 1.08998 * 109.47291 * 59.99969 * 3 2 1 31 31 H 1.08998 * 109.46821 * 300.00343 * 3 2 1 32 32 H 1.09006 * 109.47750 * 59.99771 * 4 3 2 33 33 H 1.09008 * 109.47295 * 299.99683 * 4 3 2 34 34 H 1.08999 * 109.58559 * 353.41291 * 8 7 5 35 35 H 1.08999 * 109.58611 * 113.69500 * 8 7 5 36 36 H 1.09001 * 109.49798 * 185.40819 * 9 8 7 37 37 H 1.09002 * 109.50253 * 65.31530 * 9 8 7 38 38 H 0.97001 * 120.00002 * 95.06433 * 12 10 9 39 39 H 0.97004 * 119.99706 * 180.02562 * 16 15 13 40 40 H 1.09006 * 109.49610 * 58.59342 * 21 10 9 41 41 H 1.09000 * 109.49368 * 178.68410 * 21 10 9 42 42 H 1.08994 * 109.46800 * 173.84676 * 24 22 7 43 43 H 1.08996 * 109.46807 * 293.84454 * 24 22 7 44 44 H 1.08999 * 109.46749 * 53.84214 * 24 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4424 -0.0006 5 6 4.0723 2.8632 -0.0013 6 8 3.2843 3.7851 -0.0017 7 7 5.3974 3.1095 -0.0014 8 6 6.3633 2.0094 -0.1260 9 6 7.3565 2.0911 1.0374 10 6 7.9903 3.4838 1.0650 11 1 8.7155 3.5365 1.8770 12 7 8.6659 3.7379 -0.2099 13 6 9.9487 3.3001 -0.4042 14 1 10.4623 2.7671 0.3822 15 6 10.5908 3.5458 -1.6101 16 7 9.9647 4.1950 -2.5687 17 14 12.3434 2.9553 -1.8724 18 1 12.3237 1.5860 -2.4469 19 1 13.0408 3.8743 -2.8073 20 1 13.0592 2.9359 -0.5713 21 6 6.9019 4.5371 1.2841 22 6 5.9036 4.4831 0.1235 23 1 6.4020 4.7744 -0.8011 24 6 4.7410 5.4380 0.4021 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8932 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6766 1.9563 -0.8900 32 1 3.9330 0.9287 -0.8908 33 1 3.9337 0.9285 0.8892 34 1 5.8371 1.0554 -0.0910 35 1 6.8974 2.0975 -1.0721 36 1 8.1349 1.3397 0.9047 37 1 6.8328 1.9111 1.9763 38 1 8.2045 4.2162 -0.9164 39 1 10.4132 4.3664 -3.4115 40 1 6.3825 4.3341 2.2207 41 1 7.3569 5.5267 1.3270 42 1 5.1306 6.4361 0.6022 43 1 4.0828 5.4721 -0.4660 44 1 4.1814 5.0858 1.2687 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716756556.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:28:33 Heat of formation + Delta-G solvation = -51.513855 kcal Electronic energy + Delta-G solvation = -21616.925252 eV Core-core repulsion = 18568.394947 eV Total energy + Delta-G solvation = -3048.530305 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.54255 -38.93063 -36.35005 -35.80626 -34.02083 -33.61139 -31.19970 -30.69351 -28.34038 -25.97724 -25.62551 -24.92135 -23.02608 -21.84347 -21.03607 -19.56093 -19.14191 -17.65865 -17.19938 -16.82801 -16.49717 -15.91738 -15.63073 -15.39881 -15.01885 -14.77762 -14.60546 -14.35057 -14.21717 -13.72081 -13.40287 -13.29456 -13.09118 -12.94309 -12.84898 -12.65731 -12.44892 -12.16901 -12.11609 -12.06243 -11.95792 -11.84630 -11.78948 -11.58839 -11.41439 -11.36109 -10.88280 -10.01136 -9.46001 -8.95204 -7.90031 -5.17470 1.49701 1.50333 1.58496 1.72213 2.09230 2.59247 3.43637 3.58195 3.87959 3.93625 3.99320 4.05317 4.09016 4.12146 4.30200 4.38189 4.41498 4.48952 4.52255 4.65592 4.66923 4.75487 4.81307 4.89225 4.91688 4.97389 5.03271 5.09539 5.14210 5.15138 5.25934 5.27279 5.33897 5.37291 5.41804 5.42544 5.53511 5.58136 5.76993 6.31842 6.60042 7.29502 7.38592 8.14995 8.38062 9.33415 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.026164 B = 0.004375 C = 0.004076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.913416 B = 6398.454165 C = 6868.437952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C -0.098 4.098 4 C -0.136 4.136 5 C 0.504 3.496 6 O -0.573 6.573 7 N -0.602 5.602 8 C 0.120 3.880 9 C -0.140 4.140 10 C 0.165 3.835 11 H 0.048 0.952 12 N -0.732 5.732 13 C -0.230 4.230 14 H 0.077 0.923 15 C -0.076 4.076 16 N -0.971 5.971 17 Si 0.968 3.032 18 H -0.288 1.288 19 H -0.302 1.302 20 H -0.270 1.270 21 C -0.121 4.121 22 C 0.145 3.855 23 H 0.044 0.956 24 C -0.118 4.118 25 H 0.049 0.951 26 H 0.064 0.936 27 H 0.052 0.948 28 H 0.068 0.932 29 H 0.073 0.927 30 H 0.056 0.944 31 H 0.050 0.950 32 H 0.103 0.897 33 H 0.114 0.886 34 H 0.109 0.891 35 H 0.046 0.954 36 H 0.066 0.934 37 H 0.079 0.921 38 H 0.372 0.628 39 H 0.248 0.752 40 H 0.083 0.917 41 H 0.066 0.934 42 H 0.050 0.950 43 H 0.056 0.944 44 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.378 -8.531 8.391 18.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.158 4.158 3 C -0.136 4.136 4 C -0.175 4.175 5 C 0.295 3.705 6 O -0.454 6.454 7 N -0.335 5.335 8 C -0.003 4.003 9 C -0.181 4.181 10 C 0.056 3.944 11 H 0.066 0.934 12 N -0.373 5.373 13 C -0.362 4.362 14 H 0.095 0.905 15 C -0.268 4.268 16 N -0.622 5.622 17 Si 0.798 3.202 18 H -0.215 1.215 19 H -0.229 1.229 20 H -0.195 1.195 21 C -0.160 4.160 22 C 0.041 3.959 23 H 0.063 0.937 24 C -0.175 4.175 25 H 0.068 0.932 26 H 0.083 0.917 27 H 0.071 0.929 28 H 0.086 0.914 29 H 0.091 0.909 30 H 0.075 0.925 31 H 0.069 0.931 32 H 0.121 0.879 33 H 0.132 0.868 34 H 0.127 0.873 35 H 0.065 0.935 36 H 0.085 0.915 37 H 0.098 0.902 38 H 0.205 0.795 39 H 0.057 0.943 40 H 0.101 0.899 41 H 0.085 0.915 42 H 0.069 0.931 43 H 0.075 0.925 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -14.603 -8.121 8.449 18.724 hybrid contribution 1.212 0.301 -0.938 1.562 sum -13.391 -7.820 7.511 17.230 Atomic orbital electron populations 1.21772 0.95595 1.02058 1.01652 1.21527 0.96201 0.95254 1.02847 1.21304 0.92705 0.97563 1.02026 1.21806 0.97825 0.92154 1.05735 1.21352 0.81296 0.92877 0.75020 1.90694 1.56283 1.46663 1.51791 1.48269 1.05871 1.07698 1.71641 1.21661 0.90176 0.89492 0.98944 1.22364 0.98307 0.99303 0.98087 1.20456 0.92452 0.93209 0.88260 0.93435 1.42685 1.13235 1.67741 1.13661 1.19609 0.90929 1.27530 0.98130 0.90477 1.25467 1.02024 1.02486 0.96843 1.69822 1.38424 1.48149 1.05819 0.85217 0.80615 0.77008 0.77386 1.21529 1.22945 1.19539 1.22113 0.95978 0.99815 0.98089 1.21079 0.94921 0.82041 0.97853 0.93749 1.21990 0.95939 0.96948 1.02650 0.93227 0.91699 0.92902 0.91358 0.90851 0.92474 0.93118 0.87851 0.86834 0.87299 0.93516 0.91532 0.90235 0.79501 0.94343 0.89872 0.91507 0.93078 0.92483 0.92265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 9.91 71.98 0.71 -1.45 16 2 C -0.12 -1.78 5.93 30.59 0.18 -1.60 16 3 C -0.10 -1.95 4.50 30.59 0.14 -1.81 16 4 C -0.14 -2.76 4.05 29.84 0.12 -2.63 16 5 C 0.50 14.82 7.50 87.66 0.66 15.47 16 6 O -0.57 -20.03 11.56 -3.03 -0.04 -20.06 16 7 N -0.60 -18.69 2.97 -795.04 -2.36 -21.05 16 8 C 0.12 3.54 6.09 86.36 0.53 4.07 16 9 C -0.14 -4.22 5.78 30.67 0.18 -4.04 16 10 C 0.16 6.02 3.10 45.02 0.14 6.16 16 11 H 0.05 1.77 8.08 -2.39 -0.02 1.75 16 12 N -0.73 -34.73 4.31 -322.82 -1.39 -36.12 16 13 C -0.23 -12.13 9.93 84.04 0.83 -11.29 16 14 H 0.08 3.88 7.83 -2.91 -0.02 3.86 16 15 C -0.08 -4.25 5.50 84.86 0.47 -3.78 16 16 N -0.97 -58.51 13.06 21.65 0.28 -58.23 16 17 Si 0.97 45.20 29.55 68.60 2.03 47.22 16 18 H -0.29 -13.20 7.11 99.48 0.71 -12.50 16 19 H -0.30 -14.51 7.11 99.48 0.71 -13.80 16 20 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 21 C -0.12 -3.92 5.07 30.67 0.16 -3.77 16 22 C 0.14 4.97 3.19 44.97 0.14 5.12 16 23 H 0.04 1.83 6.64 -2.39 -0.02 1.81 16 24 C -0.12 -3.83 7.61 71.98 0.55 -3.29 16 25 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 26 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 27 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.06 1.26 8.10 -2.39 -0.02 1.24 16 31 H 0.05 1.18 8.10 -2.39 -0.02 1.16 16 32 H 0.10 1.87 7.71 -2.38 -0.02 1.85 16 33 H 0.11 1.81 7.92 -2.38 -0.02 1.79 16 34 H 0.11 2.37 5.93 -2.39 -0.01 2.36 16 35 H 0.05 1.75 7.74 -2.39 -0.02 1.73 16 36 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 37 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 38 H 0.37 19.42 6.06 -92.71 -0.56 18.86 16 39 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 40 H 0.08 2.33 8.14 -2.38 -0.02 2.31 16 41 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 42 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 43 H 0.06 2.04 6.58 -2.39 -0.02 2.03 16 44 H 0.06 1.92 6.93 -2.39 -0.02 1.90 16 Total: -1.00 -64.07 338.31 3.72 -60.35 By element: Atomic # 1 Polarization: 30.35 SS G_CDS: 0.39 Total: 30.74 kcal Atomic # 6 Polarization: -7.65 SS G_CDS: 4.80 Total: -2.85 kcal Atomic # 7 Polarization: -111.93 SS G_CDS: -3.47 Total: -115.40 kcal Atomic # 8 Polarization: -20.03 SS G_CDS: -0.04 Total: -20.06 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.22 kcal Total: -64.07 3.72 -60.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716756556.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.840 kcal (2) G-P(sol) polarization free energy of solvation -64.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds