Wall clock time and date at job start Mon Mar 30 2020 00:28:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47195 * 2 1 4 4 C 1.53008 * 109.46989 * 179.97438 * 3 2 1 5 5 C 1.50700 * 109.46847 * 180.02562 * 4 3 2 6 6 O 1.21282 * 119.99824 * 0.02562 * 5 4 3 7 7 N 1.34774 * 119.99975 * 179.97438 * 5 4 3 8 8 C 1.46926 * 120.62882 * 5.69298 * 7 5 4 9 9 C 1.53196 * 108.77361 * 233.62624 * 8 7 5 10 10 C 1.53042 * 109.31430 * 305.36594 * 9 8 7 11 11 H 1.09002 * 109.44786 * 301.35029 * 10 9 8 12 12 N 1.46497 * 109.45699 * 181.38427 * 10 9 8 13 13 C 1.36935 * 120.00070 * 84.93431 * 12 10 9 14 14 H 1.08005 * 120.00145 * 359.97438 * 13 12 10 15 15 C 1.38811 * 120.00354 * 179.97438 * 13 12 10 16 16 N 1.31613 * 119.99611 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 120.00111 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.46688 * 179.97438 * 17 15 13 19 19 H 1.48501 * 109.47198 * 59.99791 * 17 15 13 20 20 H 1.48495 * 109.46913 * 299.99822 * 17 15 13 21 21 C 1.53039 * 109.53771 * 61.36324 * 10 9 8 22 22 C 1.46923 * 120.63180 * 185.70887 * 7 5 4 23 23 H 1.08996 * 109.59042 * 246.15976 * 22 7 5 24 24 C 1.52995 * 109.58449 * 6.58849 * 22 7 5 25 25 H 1.08991 * 109.47101 * 300.00305 * 1 2 3 26 26 H 1.09000 * 109.46866 * 59.99751 * 1 2 3 27 27 H 1.08994 * 109.47036 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47612 * 239.99856 * 2 1 3 29 29 H 1.08995 * 109.47285 * 120.00052 * 2 1 3 30 30 H 1.09000 * 109.46897 * 60.00239 * 3 2 1 31 31 H 1.09000 * 109.47417 * 299.99912 * 3 2 1 32 32 H 1.09000 * 109.46895 * 60.00496 * 4 3 2 33 33 H 1.09000 * 109.47180 * 300.00315 * 4 3 2 34 34 H 1.08999 * 109.58598 * 353.41638 * 8 7 5 35 35 H 1.09006 * 109.58760 * 113.69832 * 8 7 5 36 36 H 1.09000 * 109.49313 * 185.41294 * 9 8 7 37 37 H 1.08998 * 109.49482 * 65.31863 * 9 8 7 38 38 H 0.96997 * 120.00018 * 264.92507 * 12 10 9 39 39 H 0.97004 * 120.00547 * 0.02562 * 16 15 13 40 40 H 1.09000 * 109.49371 * 58.58464 * 21 10 9 41 41 H 1.09000 * 109.49659 * 178.68105 * 21 10 9 42 42 H 1.09012 * 109.47156 * 173.76016 * 24 22 7 43 43 H 1.09004 * 109.47353 * 293.75388 * 24 22 7 44 44 H 1.09002 * 109.47678 * 53.76188 * 24 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4425 0.0006 5 6 4.0724 2.8633 0.0013 6 8 3.2842 3.7851 0.0017 7 7 5.3974 3.1096 0.0024 8 6 6.3634 2.0095 -0.1223 9 6 7.3557 2.0903 1.0420 10 6 7.9895 3.4830 1.0712 11 1 8.4927 3.6727 0.1231 12 7 8.9634 3.5531 2.1634 13 6 10.2459 3.1158 1.9662 14 1 10.5394 2.7187 1.0056 15 6 11.1689 3.1827 3.0008 16 7 10.8114 3.6670 4.1712 17 14 12.9187 2.5867 2.7315 18 1 13.7003 2.7652 3.9816 19 1 13.5467 3.3725 1.6391 20 1 12.9002 1.1491 2.3597 21 6 6.9009 4.5362 1.2904 22 6 5.9035 4.4831 0.1288 23 1 6.4026 4.7751 -0.7951 24 6 4.7389 5.4349 0.4090 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9564 -0.8900 32 1 3.9337 0.9286 -0.8892 33 1 3.9330 0.9287 0.8908 34 1 5.8371 1.0556 -0.0885 35 1 6.8983 2.0984 -1.0679 36 1 8.1342 1.3390 0.9092 37 1 6.8312 1.9095 1.9802 38 1 8.6998 3.9095 3.0261 39 1 9.9029 3.9768 4.3110 40 1 6.3807 4.3323 2.2262 41 1 7.3558 5.5258 1.3345 42 1 5.1264 6.4334 0.6121 43 1 4.0813 5.4702 -0.4596 44 1 4.1792 5.0796 1.2743 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716756557.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:28:36 Heat of formation + Delta-G solvation = -37.344618 kcal Electronic energy + Delta-G solvation = -21247.491126 eV Core-core repulsion = 18199.575246 eV Total energy + Delta-G solvation = -3047.915880 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.44081 -37.60149 -35.59367 -34.71352 -32.92471 -32.06694 -30.36199 -28.99092 -26.96750 -25.02448 -23.95377 -23.02014 -21.91508 -20.95963 -20.20242 -18.78656 -17.30494 -16.68120 -16.19085 -15.86408 -15.11853 -14.77296 -14.12172 -14.02783 -13.92268 -13.63726 -13.57713 -13.36521 -13.06245 -12.58894 -12.45299 -12.12691 -12.01981 -11.68135 -11.48267 -11.41667 -11.28516 -11.17136 -10.85741 -10.81720 -10.75203 -10.58509 -10.45417 -10.09684 -10.00205 -9.23131 -8.94340 -8.93371 -8.42006 -7.07820 -6.12920 -3.13349 2.70949 3.07658 3.49133 3.52544 3.70226 4.45691 4.63305 4.69702 4.75424 4.92877 5.05173 5.08287 5.13897 5.23211 5.30019 5.32945 5.42882 5.47972 5.55230 5.61452 5.62178 5.64594 5.73590 5.77306 5.84775 5.92221 5.96177 6.06892 6.07591 6.13910 6.19027 6.29782 6.37962 6.40303 6.47402 6.68815 6.83803 6.96464 7.56065 7.76985 8.30195 8.72585 9.19393 10.05899 10.21131 11.35331 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.028498 B = 0.003828 C = 0.003550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.286997 B = 7313.509300 C = 7884.433517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C -0.103 4.103 4 C -0.143 4.143 5 C 0.513 3.487 6 O -0.542 6.542 7 N -0.606 5.606 8 C 0.108 3.892 9 C -0.150 4.150 10 C 0.184 3.816 11 H 0.048 0.952 12 N -0.736 5.736 13 C -0.332 4.332 14 H 0.064 0.936 15 C -0.045 4.045 16 N -0.943 5.943 17 Si 1.079 2.921 18 H -0.285 1.285 19 H -0.295 1.295 20 H -0.295 1.295 21 C -0.136 4.136 22 C 0.147 3.853 23 H 0.069 0.931 24 C -0.134 4.134 25 H 0.054 0.946 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.089 0.911 33 H 0.091 0.909 34 H 0.079 0.921 35 H 0.067 0.933 36 H 0.075 0.925 37 H 0.058 0.942 38 H 0.367 0.633 39 H 0.255 0.745 40 H 0.061 0.939 41 H 0.073 0.927 42 H 0.042 0.958 43 H 0.074 0.926 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.117 -5.509 -10.254 19.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.163 4.163 3 C -0.141 4.141 4 C -0.183 4.183 5 C 0.301 3.699 6 O -0.421 6.421 7 N -0.339 5.339 8 C -0.016 4.016 9 C -0.192 4.192 10 C 0.074 3.926 11 H 0.066 0.934 12 N -0.377 5.377 13 C -0.463 4.463 14 H 0.082 0.918 15 C -0.243 4.243 16 N -0.589 5.589 17 Si 0.910 3.090 18 H -0.210 1.210 19 H -0.223 1.223 20 H -0.223 1.223 21 C -0.175 4.175 22 C 0.044 3.956 23 H 0.087 0.913 24 C -0.191 4.191 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.108 0.892 33 H 0.110 0.890 34 H 0.097 0.903 35 H 0.085 0.915 36 H 0.094 0.906 37 H 0.076 0.924 38 H 0.200 0.800 39 H 0.066 0.934 40 H 0.080 0.920 41 H 0.092 0.908 42 H 0.061 0.939 43 H 0.093 0.907 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -14.919 -5.291 -9.722 18.577 hybrid contribution -1.344 0.096 -0.445 1.419 sum -16.263 -5.195 -10.168 19.871 Atomic orbital electron populations 1.21754 0.95809 1.01423 1.01952 1.21555 0.96025 0.96774 1.01988 1.21365 0.92914 0.96386 1.03427 1.21777 0.97795 0.94629 1.04112 1.20664 0.81850 0.91507 0.75834 1.90715 1.55747 1.45316 1.50280 1.48270 1.05493 1.08085 1.72072 1.21851 0.90979 0.89021 0.99729 1.22649 0.97753 1.01985 0.96774 1.20095 0.88695 0.91012 0.92794 0.93378 1.42442 1.08374 1.76382 1.10525 1.20025 0.88038 1.38832 0.99378 0.91771 1.25772 1.04506 1.00859 0.93126 1.70877 1.20189 1.44474 1.23320 0.83252 0.74990 0.75470 0.75281 1.21040 1.22268 1.22266 1.22309 0.96545 1.00792 0.97815 1.21267 0.95103 0.80942 0.98331 0.91295 1.22169 0.96539 0.96614 1.03798 0.92683 0.92746 0.92864 0.92058 0.91970 0.91316 0.91368 0.89244 0.89025 0.90313 0.91494 0.90624 0.92362 0.80037 0.93361 0.92007 0.90790 0.93916 0.90710 0.91906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.91 37.16 0.37 -0.76 16 2 C -0.13 -1.00 5.93 -26.73 -0.16 -1.16 16 3 C -0.10 -1.02 4.50 -26.73 -0.12 -1.14 16 4 C -0.14 -1.46 4.06 -27.88 -0.11 -1.58 16 5 C 0.51 7.05 7.50 -10.99 -0.08 6.97 16 6 O -0.54 -8.76 11.55 5.56 0.06 -8.70 16 7 N -0.61 -8.42 2.97 -165.22 -0.49 -8.91 16 8 C 0.11 1.37 6.35 -3.71 -0.02 1.35 16 9 C -0.15 -2.50 5.66 -26.61 -0.15 -2.66 16 10 C 0.18 3.56 2.73 -67.89 -0.19 3.37 16 11 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 12 N -0.74 -18.07 5.12 -53.39 -0.27 -18.35 16 13 C -0.33 -9.13 9.93 -15.06 -0.15 -9.28 16 14 H 0.06 1.73 7.83 -52.48 -0.41 1.32 16 15 C -0.04 -1.29 5.50 -17.43 -0.10 -1.39 16 16 N -0.94 -29.04 13.70 55.49 0.76 -28.28 16 17 Si 1.08 25.59 29.92 -169.99 -5.09 20.51 16 18 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 19 H -0.30 -6.70 7.11 56.52 0.40 -6.29 16 20 H -0.30 -6.65 7.11 56.52 0.40 -6.25 16 21 C -0.14 -2.29 4.84 -26.61 -0.13 -2.41 16 22 C 0.15 2.17 3.49 -67.60 -0.24 1.94 16 23 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 24 C -0.13 -1.97 7.61 37.16 0.28 -1.68 16 25 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 27 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.76 8.10 -51.93 -0.42 0.34 16 31 H 0.07 0.72 8.10 -51.93 -0.42 0.30 16 32 H 0.09 0.76 7.71 -51.93 -0.40 0.36 16 33 H 0.09 0.88 7.92 -51.93 -0.41 0.47 16 34 H 0.08 0.81 5.93 -51.93 -0.31 0.50 16 35 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 36 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 37 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.37 9.42 6.63 -40.82 -0.27 9.15 16 39 H 0.26 7.75 6.78 -40.82 -0.28 7.47 16 40 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 42 H 0.04 0.57 8.14 -51.92 -0.42 0.15 16 43 H 0.07 1.15 6.58 -51.93 -0.34 0.80 16 44 H 0.06 1.01 6.92 -51.93 -0.36 0.65 16 LS Contribution 340.86 15.07 5.14 5.14 Total: -1.00 -31.45 340.86 -8.59 -40.04 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: -7.91 Total: 6.98 kcal Atomic # 6 Polarization: -7.64 SS G_CDS: -0.79 Total: -8.43 kcal Atomic # 7 Polarization: -55.53 SS G_CDS: 0.00 Total: -55.54 kcal Atomic # 8 Polarization: -8.76 SS G_CDS: 0.06 Total: -8.70 kcal Atomic # 14 Polarization: 25.59 SS G_CDS: -5.09 Total: 20.51 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.45 -8.59 -40.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716756557.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.693 kcal (2) G-P(sol) polarization free energy of solvation -31.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds