Wall clock time and date at job start Mon Mar 30 2020 00:28:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47195 * 2 1 4 4 C 1.53008 * 109.46989 * 179.97438 * 3 2 1 5 5 C 1.50700 * 109.46847 * 180.02562 * 4 3 2 6 6 O 1.21282 * 119.99824 * 0.02562 * 5 4 3 7 7 N 1.34774 * 119.99975 * 179.97438 * 5 4 3 8 8 C 1.46926 * 120.62882 * 5.69298 * 7 5 4 9 9 C 1.53196 * 108.77361 * 233.62624 * 8 7 5 10 10 C 1.53042 * 109.31430 * 305.36594 * 9 8 7 11 11 H 1.09002 * 109.44786 * 301.35029 * 10 9 8 12 12 N 1.46497 * 109.45699 * 181.38427 * 10 9 8 13 13 C 1.36935 * 120.00070 * 84.93431 * 12 10 9 14 14 H 1.08005 * 120.00145 * 359.97438 * 13 12 10 15 15 C 1.38811 * 120.00354 * 179.97438 * 13 12 10 16 16 N 1.31613 * 119.99611 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 120.00111 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.46688 * 179.97438 * 17 15 13 19 19 H 1.48501 * 109.47198 * 59.99791 * 17 15 13 20 20 H 1.48495 * 109.46913 * 299.99822 * 17 15 13 21 21 C 1.53039 * 109.53771 * 61.36324 * 10 9 8 22 22 C 1.46923 * 120.63180 * 185.70887 * 7 5 4 23 23 H 1.08996 * 109.59042 * 246.15976 * 22 7 5 24 24 C 1.52995 * 109.58449 * 6.58849 * 22 7 5 25 25 H 1.08991 * 109.47101 * 300.00305 * 1 2 3 26 26 H 1.09000 * 109.46866 * 59.99751 * 1 2 3 27 27 H 1.08994 * 109.47036 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47612 * 239.99856 * 2 1 3 29 29 H 1.08995 * 109.47285 * 120.00052 * 2 1 3 30 30 H 1.09000 * 109.46897 * 60.00239 * 3 2 1 31 31 H 1.09000 * 109.47417 * 299.99912 * 3 2 1 32 32 H 1.09000 * 109.46895 * 60.00496 * 4 3 2 33 33 H 1.09000 * 109.47180 * 300.00315 * 4 3 2 34 34 H 1.08999 * 109.58598 * 353.41638 * 8 7 5 35 35 H 1.09006 * 109.58760 * 113.69832 * 8 7 5 36 36 H 1.09000 * 109.49313 * 185.41294 * 9 8 7 37 37 H 1.08998 * 109.49482 * 65.31863 * 9 8 7 38 38 H 0.96997 * 120.00018 * 264.92507 * 12 10 9 39 39 H 0.97004 * 120.00547 * 0.02562 * 16 15 13 40 40 H 1.09000 * 109.49371 * 58.58464 * 21 10 9 41 41 H 1.09000 * 109.49659 * 178.68105 * 21 10 9 42 42 H 1.09012 * 109.47156 * 173.76016 * 24 22 7 43 43 H 1.09004 * 109.47353 * 293.75388 * 24 22 7 44 44 H 1.09002 * 109.47678 * 53.76188 * 24 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4425 0.0006 5 6 4.0724 2.8633 0.0013 6 8 3.2842 3.7851 0.0017 7 7 5.3974 3.1096 0.0024 8 6 6.3634 2.0095 -0.1223 9 6 7.3557 2.0903 1.0420 10 6 7.9895 3.4830 1.0712 11 1 8.4927 3.6727 0.1231 12 7 8.9634 3.5531 2.1634 13 6 10.2459 3.1158 1.9662 14 1 10.5394 2.7187 1.0056 15 6 11.1689 3.1827 3.0008 16 7 10.8114 3.6670 4.1712 17 14 12.9187 2.5867 2.7315 18 1 13.7003 2.7652 3.9816 19 1 13.5467 3.3725 1.6391 20 1 12.9002 1.1491 2.3597 21 6 6.9009 4.5362 1.2904 22 6 5.9035 4.4831 0.1288 23 1 6.4026 4.7751 -0.7951 24 6 4.7389 5.4349 0.4090 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9564 -0.8900 32 1 3.9337 0.9286 -0.8892 33 1 3.9330 0.9287 0.8908 34 1 5.8371 1.0556 -0.0885 35 1 6.8983 2.0984 -1.0679 36 1 8.1342 1.3390 0.9092 37 1 6.8312 1.9095 1.9802 38 1 8.6998 3.9095 3.0261 39 1 9.9029 3.9768 4.3110 40 1 6.3807 4.3323 2.2262 41 1 7.3558 5.5258 1.3345 42 1 5.1264 6.4334 0.6121 43 1 4.0813 5.4702 -0.4596 44 1 4.1792 5.0796 1.2743 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716756557.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:28:36 Heat of formation + Delta-G solvation = -55.829403 kcal Electronic energy + Delta-G solvation = -21248.292687 eV Core-core repulsion = 18199.575246 eV Total energy + Delta-G solvation = -3048.717441 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.58843 -38.92979 -36.57797 -36.22525 -34.12992 -33.75262 -31.29093 -30.59765 -28.33727 -26.06656 -25.55012 -24.54096 -22.98068 -21.89167 -21.55940 -19.97347 -19.29932 -17.76481 -17.22415 -17.01235 -16.61503 -16.02560 -15.78684 -15.37957 -15.14321 -14.93995 -14.62734 -14.41889 -14.36913 -13.63626 -13.46815 -13.28113 -13.19698 -13.11569 -12.75701 -12.62809 -12.42841 -12.20459 -12.11495 -12.05320 -11.91753 -11.87135 -11.80941 -11.63174 -11.44141 -11.19102 -10.88784 -10.09246 -9.60420 -9.12651 -8.37785 -5.32246 1.59145 1.64738 1.69099 1.85043 1.99807 2.72241 3.40802 3.49372 3.59702 3.80798 3.91733 4.00069 4.02228 4.06324 4.17494 4.25485 4.36119 4.45708 4.49912 4.54325 4.60015 4.62695 4.67448 4.76217 4.81986 4.92755 4.94759 4.97117 5.01987 5.09086 5.11846 5.19924 5.29374 5.33854 5.39625 5.43562 5.50664 5.61042 5.66315 6.47714 6.49671 7.09480 7.22268 7.99369 8.12507 9.13983 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.028498 B = 0.003828 C = 0.003550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.286997 B = 7313.509300 C = 7884.433517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.121 4.121 3 C -0.099 4.099 4 C -0.138 4.138 5 C 0.507 3.493 6 O -0.570 6.570 7 N -0.609 5.609 8 C 0.116 3.884 9 C -0.140 4.140 10 C 0.178 3.822 11 H 0.045 0.955 12 N -0.751 5.751 13 C -0.325 4.325 14 H 0.070 0.930 15 C -0.108 4.108 16 N -0.979 5.979 17 Si 1.127 2.873 18 H -0.297 1.297 19 H -0.278 1.278 20 H -0.275 1.275 21 C -0.123 4.123 22 C 0.150 3.850 23 H 0.081 0.919 24 C -0.122 4.122 25 H 0.048 0.952 26 H 0.053 0.947 27 H 0.063 0.937 28 H 0.074 0.926 29 H 0.066 0.934 30 H 0.049 0.951 31 H 0.058 0.942 32 H 0.117 0.883 33 H 0.103 0.897 34 H 0.114 0.886 35 H 0.083 0.917 36 H 0.064 0.936 37 H 0.045 0.955 38 H 0.356 0.644 39 H 0.242 0.758 40 H 0.049 0.951 41 H 0.066 0.934 42 H 0.051 0.949 43 H 0.070 0.930 44 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.448 -7.211 -12.195 21.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.159 4.159 3 C -0.137 4.137 4 C -0.177 4.177 5 C 0.297 3.703 6 O -0.451 6.451 7 N -0.342 5.342 8 C -0.007 4.007 9 C -0.181 4.181 10 C 0.069 3.931 11 H 0.063 0.937 12 N -0.392 5.392 13 C -0.456 4.456 14 H 0.088 0.912 15 C -0.299 4.299 16 N -0.627 5.627 17 Si 0.952 3.048 18 H -0.223 1.223 19 H -0.204 1.204 20 H -0.201 1.201 21 C -0.162 4.162 22 C 0.047 3.953 23 H 0.098 0.902 24 C -0.179 4.179 25 H 0.067 0.933 26 H 0.072 0.928 27 H 0.082 0.918 28 H 0.093 0.907 29 H 0.085 0.915 30 H 0.068 0.932 31 H 0.076 0.924 32 H 0.135 0.865 33 H 0.121 0.879 34 H 0.132 0.868 35 H 0.101 0.899 36 H 0.083 0.917 37 H 0.064 0.936 38 H 0.188 0.812 39 H 0.053 0.947 40 H 0.068 0.932 41 H 0.084 0.916 42 H 0.070 0.930 43 H 0.089 0.911 44 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -15.295 -7.013 -11.721 20.506 hybrid contribution -1.326 0.668 0.122 1.490 sum -16.621 -6.345 -11.599 21.238 Atomic orbital electron populations 1.21773 0.95670 1.02052 1.01649 1.21529 0.96167 0.95330 1.02850 1.21315 0.92854 0.97514 1.02036 1.21828 0.97772 0.92233 1.05873 1.21329 0.81347 0.92810 0.74812 1.90709 1.56322 1.46653 1.51375 1.48344 1.05981 1.07781 1.72097 1.21885 0.90242 0.90198 0.98342 1.22426 0.98191 0.99302 0.98168 1.20354 0.88450 0.93408 0.90844 0.93730 1.42688 1.08708 1.76435 1.11366 1.20374 0.89133 1.36902 0.99227 0.91188 1.27189 1.08376 1.01460 0.92837 1.70992 1.19672 1.47226 1.24842 0.82638 0.70755 0.76315 0.75114 1.22295 1.20427 1.20083 1.22153 0.96170 0.99566 0.98333 1.21178 0.94540 0.82020 0.97607 0.90156 1.22015 0.96117 0.97026 1.02746 0.93296 0.92833 0.91758 0.90731 0.91477 0.93222 0.92355 0.86524 0.87854 0.86832 0.89871 0.91686 0.93576 0.81242 0.94717 0.93227 0.91558 0.93018 0.91134 0.93673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 9.91 71.98 0.71 -1.31 16 2 C -0.12 -1.62 5.93 30.59 0.18 -1.43 16 3 C -0.10 -1.78 4.50 30.60 0.14 -1.64 16 4 C -0.14 -2.39 4.06 29.85 0.12 -2.27 16 5 C 0.51 12.94 7.50 87.66 0.66 13.60 16 6 O -0.57 -17.97 11.55 -3.04 -0.04 -18.01 16 7 N -0.61 -15.60 2.97 -795.03 -2.36 -17.97 16 8 C 0.12 2.59 6.35 86.36 0.55 3.14 16 9 C -0.14 -4.46 5.66 30.67 0.17 -4.28 16 10 C 0.18 6.76 2.73 45.02 0.12 6.89 16 11 H 0.04 1.74 8.08 -2.39 -0.02 1.72 16 12 N -0.75 -37.31 5.12 -322.81 -1.65 -38.97 16 13 C -0.33 -17.85 9.93 84.03 0.83 -17.02 16 14 H 0.07 3.70 7.83 -2.91 -0.02 3.67 16 15 C -0.11 -6.21 5.50 84.86 0.47 -5.74 16 16 N -0.98 -61.53 13.70 21.65 0.30 -61.23 16 17 Si 1.13 51.26 29.92 68.60 2.05 53.31 16 18 H -0.30 -13.97 7.11 99.48 0.71 -13.26 16 19 H -0.28 -11.74 7.11 99.48 0.71 -11.04 16 20 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 21 C -0.12 -4.13 4.84 30.67 0.15 -3.98 16 22 C 0.15 4.26 3.49 44.98 0.16 4.42 16 23 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 24 C -0.12 -3.51 7.61 71.98 0.55 -2.96 16 25 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 26 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 27 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 28 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.05 1.07 8.10 -2.39 -0.02 1.05 16 31 H 0.06 1.16 8.10 -2.39 -0.02 1.14 16 32 H 0.12 1.45 7.71 -2.39 -0.02 1.43 16 33 H 0.10 1.62 7.92 -2.39 -0.02 1.60 16 34 H 0.11 1.81 5.93 -2.39 -0.01 1.80 16 35 H 0.08 1.67 8.14 -2.38 -0.02 1.65 16 36 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 37 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.36 18.91 6.63 -92.71 -0.61 18.30 16 39 H 0.24 15.26 6.78 -92.71 -0.63 14.63 16 40 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 41 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 42 H 0.05 1.36 8.14 -2.38 -0.02 1.34 16 43 H 0.07 2.11 6.58 -2.39 -0.02 2.09 16 44 H 0.04 1.45 6.92 -2.39 -0.02 1.43 16 Total: -1.00 -68.70 340.86 3.59 -65.11 By element: Atomic # 1 Polarization: 29.87 SS G_CDS: 0.48 Total: 30.35 kcal Atomic # 6 Polarization: -17.41 SS G_CDS: 4.81 Total: -12.60 kcal Atomic # 7 Polarization: -114.45 SS G_CDS: -3.72 Total: -118.17 kcal Atomic # 8 Polarization: -17.97 SS G_CDS: -0.04 Total: -18.01 kcal Atomic # 14 Polarization: 51.26 SS G_CDS: 2.05 Total: 53.31 kcal Total: -68.70 3.59 -65.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716756557.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.281 kcal (2) G-P(sol) polarization free energy of solvation -68.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds