Wall clock time and date at job start Mon Mar 30 2020 00:28:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52993 * 109.47245 * 2 1 4 4 C 1.52997 * 109.47280 * 179.97438 * 3 2 1 5 5 C 1.50700 * 109.47423 * 179.97438 * 4 3 2 6 6 O 1.21281 * 120.00003 * 359.97438 * 5 4 3 7 7 N 1.34782 * 120.00202 * 180.02562 * 5 4 3 8 8 C 1.46923 * 120.62835 * 354.20790 * 7 5 4 9 9 C 1.53193 * 108.77374 * 126.37544 * 8 7 5 10 10 C 1.53035 * 109.31399 * 54.63304 * 9 8 7 11 11 H 1.08995 * 109.45868 * 58.65752 * 10 9 8 12 12 N 1.46499 * 109.46117 * 178.62030 * 10 9 8 13 13 C 1.36941 * 119.99425 * 274.99837 * 12 10 9 14 14 H 1.07998 * 120.00159 * 359.97438 * 13 12 10 15 15 C 1.38811 * 119.99838 * 179.97438 * 13 12 10 16 16 N 1.31627 * 120.00076 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 120.00368 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.47058 * 89.99875 * 17 15 13 19 19 H 1.48496 * 109.47751 * 210.00112 * 17 15 13 20 20 H 1.48508 * 109.47049 * 330.00517 * 17 15 13 21 21 C 1.53040 * 109.53982 * 298.63495 * 10 9 8 22 22 C 1.46922 * 120.63130 * 174.19171 * 7 5 4 23 23 H 1.09004 * 109.58890 * 113.69223 * 22 7 5 24 24 C 1.53004 * 109.58612 * 353.41594 * 22 7 5 25 25 H 1.09001 * 109.47304 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47659 * 300.00251 * 1 2 3 27 27 H 1.09002 * 109.46837 * 60.00611 * 1 2 3 28 28 H 1.09002 * 109.47325 * 239.99336 * 2 1 3 29 29 H 1.09004 * 109.46501 * 119.99797 * 2 1 3 30 30 H 1.09002 * 109.47501 * 59.99444 * 3 2 1 31 31 H 1.08997 * 109.47362 * 299.99718 * 3 2 1 32 32 H 1.09000 * 109.47322 * 59.99934 * 4 3 2 33 33 H 1.08995 * 109.47349 * 299.99915 * 4 3 2 34 34 H 1.09000 * 109.58705 * 6.59144 * 8 7 5 35 35 H 1.08991 * 109.58941 * 246.16190 * 8 7 5 36 36 H 1.09008 * 109.49724 * 294.68250 * 9 8 7 37 37 H 1.09001 * 109.49871 * 174.58864 * 9 8 7 38 38 H 0.96995 * 120.00683 * 95.00252 * 12 10 9 39 39 H 0.96994 * 120.00038 * 179.97438 * 16 15 13 40 40 H 1.09003 * 109.50395 * 181.31351 * 21 10 9 41 41 H 1.09003 * 109.49833 * 301.41777 * 21 10 9 42 42 H 1.08998 * 109.47515 * 65.78449 * 24 22 7 43 43 H 1.08997 * 109.47324 * 185.79001 * 24 22 7 44 44 H 1.09002 * 109.47099 * 305.78724 * 24 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.0724 2.8632 0.0000 6 8 3.2843 3.7851 -0.0013 7 7 5.3975 3.1095 -0.0001 8 6 6.3632 2.0097 0.1280 9 6 7.3569 2.0881 -1.0353 10 6 7.9907 3.4807 -1.0666 11 1 8.4930 3.6724 -0.1184 12 7 8.9659 3.5488 -2.1577 13 6 10.2486 3.1131 -1.9577 14 1 10.5414 2.7197 -0.9955 15 6 11.1725 3.1771 -2.9917 16 7 10.8158 3.6570 -4.1643 17 14 12.9225 2.5834 -2.7188 18 1 13.0143 1.1406 -3.0582 19 1 13.8482 3.3558 -3.5857 20 1 13.2961 2.7817 -1.2952 21 6 6.9025 4.5335 -1.2891 22 6 5.9037 4.4828 -0.1287 23 1 6.3995 4.7776 0.7962 24 6 4.7394 5.4341 -0.4120 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 1.8934 -0.5139 -0.8899 29 1 1.8932 -0.5138 0.8901 30 1 1.6766 1.9564 0.8899 31 1 1.6767 1.9563 -0.8900 32 1 3.9337 0.9285 -0.8891 33 1 3.9329 0.9288 0.8908 34 1 5.8370 1.0557 0.0953 35 1 6.8988 2.1018 1.0728 36 1 6.8335 1.9055 -1.9739 37 1 8.1353 1.3371 -0.9002 38 1 8.7030 3.9025 -3.0218 39 1 11.4614 3.7020 -4.8867 40 1 7.3573 5.5231 -1.3346 41 1 6.3832 4.3278 -2.2252 42 1 4.0765 5.4649 0.4527 43 1 5.1266 6.4338 -0.6087 44 1 4.1854 5.0814 -1.2820 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716756558.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:28:39 Heat of formation + Delta-G solvation = -37.627395 kcal Electronic energy + Delta-G solvation = -21206.607644 eV Core-core repulsion = 18158.679501 eV Total energy + Delta-G solvation = -3047.928142 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.38166 -37.51817 -35.55078 -34.48120 -32.85354 -31.92210 -30.33247 -29.18031 -26.97964 -25.01044 -24.13014 -22.90680 -21.86095 -20.90039 -20.05295 -18.74196 -17.12841 -16.61999 -16.13875 -15.78594 -14.93026 -14.83313 -14.01433 -13.98721 -13.75436 -13.67651 -13.56368 -13.22406 -12.84137 -12.49602 -12.40540 -12.07608 -11.99370 -11.58962 -11.44532 -11.36429 -11.23939 -11.14350 -10.92318 -10.83712 -10.75124 -10.71251 -10.42886 -10.25504 -9.85410 -9.72419 -8.93102 -8.89258 -8.36564 -6.99944 -5.79614 -3.08955 2.75909 3.13383 3.40723 3.45980 3.47858 4.49922 4.55422 4.73240 4.78308 4.97414 5.09831 5.14195 5.19830 5.30588 5.35901 5.38204 5.48015 5.52216 5.58238 5.64053 5.65272 5.67990 5.76325 5.84405 5.91595 5.95594 6.03130 6.10315 6.15642 6.22167 6.27282 6.38688 6.46418 6.49819 6.55913 6.76259 6.91749 7.04667 7.61745 7.66209 8.35435 8.38666 9.49800 10.07442 10.42140 11.42947 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.028490 B = 0.003814 C = 0.003539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.574424 B = 7340.396071 C = 7910.549443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C -0.103 4.103 4 C -0.143 4.143 5 C 0.513 3.487 6 O -0.543 6.543 7 N -0.605 5.605 8 C 0.107 3.893 9 C -0.151 4.151 10 C 0.179 3.821 11 H 0.047 0.953 12 N -0.724 5.724 13 C -0.240 4.240 14 H 0.070 0.930 15 C -0.013 4.013 16 N -0.932 5.932 17 Si 0.906 3.094 18 H -0.290 1.290 19 H -0.292 1.292 20 H -0.282 1.282 21 C -0.134 4.134 22 C 0.146 3.854 23 H 0.069 0.931 24 C -0.135 4.135 25 H 0.052 0.948 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.062 0.938 29 H 0.060 0.940 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.092 0.908 33 H 0.089 0.911 34 H 0.078 0.922 35 H 0.066 0.934 36 H 0.059 0.941 37 H 0.075 0.925 38 H 0.384 0.616 39 H 0.255 0.745 40 H 0.074 0.926 41 H 0.062 0.938 42 H 0.074 0.926 43 H 0.042 0.958 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.131 -5.288 9.795 19.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.163 4.163 3 C -0.141 4.141 4 C -0.183 4.183 5 C 0.301 3.699 6 O -0.421 6.421 7 N -0.339 5.339 8 C -0.016 4.016 9 C -0.193 4.193 10 C 0.069 3.931 11 H 0.065 0.935 12 N -0.364 5.364 13 C -0.371 4.371 14 H 0.088 0.912 15 C -0.209 4.209 16 N -0.581 5.581 17 Si 0.737 3.263 18 H -0.217 1.217 19 H -0.218 1.218 20 H -0.208 1.208 21 C -0.173 4.173 22 C 0.043 3.957 23 H 0.087 0.913 24 C -0.192 4.192 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.110 0.890 33 H 0.107 0.893 34 H 0.096 0.904 35 H 0.085 0.915 36 H 0.078 0.922 37 H 0.093 0.907 38 H 0.217 0.783 39 H 0.065 0.935 40 H 0.093 0.907 41 H 0.081 0.919 42 H 0.093 0.907 43 H 0.061 0.939 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -16.343 -4.837 9.845 19.683 hybrid contribution 1.178 -0.413 -0.314 1.287 sum -15.165 -5.250 9.530 18.665 Atomic orbital electron populations 1.21758 0.95841 1.01398 1.01945 1.21555 0.95995 0.96812 1.01978 1.21359 0.92972 0.96342 1.03418 1.21773 0.97744 0.94695 1.04104 1.20655 0.81887 0.91467 0.75855 1.90712 1.55777 1.45300 1.50342 1.48270 1.05462 1.08160 1.71979 1.21857 0.91003 0.88976 0.99787 1.22677 0.97742 1.02036 0.96804 1.20159 0.88986 0.90983 0.93015 0.93495 1.42436 1.07548 1.75579 1.10872 1.19231 0.86868 1.34115 0.96882 0.91178 1.24755 0.98328 1.01937 0.95927 1.69664 1.34388 1.51564 1.02438 0.86205 0.84741 0.78150 0.77170 1.21736 1.21784 1.20759 1.22292 0.96460 1.00857 0.97719 1.21286 0.95137 0.80863 0.98414 0.91344 1.22174 0.96591 0.96652 1.03755 0.92892 0.92758 0.92683 0.91962 0.92077 0.91401 0.91305 0.89005 0.89281 0.90386 0.91544 0.92212 0.90681 0.78269 0.93484 0.90701 0.91880 0.90728 0.93914 0.91964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.91 37.16 0.37 -0.77 16 2 C -0.13 -1.00 5.93 -26.74 -0.16 -1.16 16 3 C -0.10 -1.02 4.50 -26.74 -0.12 -1.14 16 4 C -0.14 -1.46 4.06 -27.88 -0.11 -1.58 16 5 C 0.51 7.05 7.50 -10.98 -0.08 6.97 16 6 O -0.54 -8.79 11.55 5.56 0.06 -8.73 16 7 N -0.61 -8.38 2.97 -165.22 -0.49 -8.87 16 8 C 0.11 1.35 6.35 -3.71 -0.02 1.33 16 9 C -0.15 -2.48 5.66 -26.61 -0.15 -2.63 16 10 C 0.18 3.41 2.73 -67.89 -0.19 3.22 16 11 H 0.05 0.91 8.08 -51.93 -0.42 0.50 16 12 N -0.72 -17.72 5.12 -53.39 -0.27 -18.00 16 13 C -0.24 -6.49 9.93 -15.06 -0.15 -6.64 16 14 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 15 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 16 N -0.93 -27.92 13.06 55.49 0.72 -27.19 16 17 Si 0.91 22.04 29.55 -169.99 -5.02 17.02 16 18 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 19 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 20 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 21 C -0.13 -2.26 4.84 -26.61 -0.13 -2.39 16 22 C 0.15 2.16 3.49 -67.60 -0.24 1.92 16 23 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 24 C -0.13 -1.98 7.61 37.16 0.28 -1.70 16 25 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 27 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.07 0.72 8.10 -51.93 -0.42 0.30 16 31 H 0.07 0.77 8.10 -51.93 -0.42 0.35 16 32 H 0.09 0.88 7.93 -51.93 -0.41 0.47 16 33 H 0.09 0.76 7.71 -51.93 -0.40 0.36 16 34 H 0.08 0.79 5.93 -51.93 -0.31 0.49 16 35 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.06 1.04 8.14 -51.92 -0.42 0.62 16 37 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 38 H 0.38 10.13 7.80 -40.82 -0.32 9.81 16 39 H 0.26 7.41 8.31 -40.82 -0.34 7.08 16 40 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 41 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 42 H 0.07 1.15 6.54 -51.93 -0.34 0.81 16 43 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.06 1.00 6.96 -51.93 -0.36 0.64 16 LS Contribution 342.57 15.07 5.16 5.16 Total: -1.00 -30.35 342.57 -8.65 -38.99 By element: Atomic # 1 Polarization: 14.67 SS G_CDS: -8.02 Total: 6.65 kcal Atomic # 6 Polarization: -4.24 SS G_CDS: -0.79 Total: -5.03 kcal Atomic # 7 Polarization: -54.02 SS G_CDS: -0.04 Total: -54.06 kcal Atomic # 8 Polarization: -8.79 SS G_CDS: 0.06 Total: -8.73 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.35 -8.65 -38.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716756558.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.366 kcal (2) G-P(sol) polarization free energy of solvation -30.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds