Wall clock time and date at job start Mon Mar 30 2020 00:28:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52993 * 109.47245 * 2 1 4 4 C 1.52997 * 109.47280 * 179.97438 * 3 2 1 5 5 C 1.50700 * 109.47423 * 179.97438 * 4 3 2 6 6 O 1.21281 * 120.00003 * 359.97438 * 5 4 3 7 7 N 1.34782 * 120.00202 * 180.02562 * 5 4 3 8 8 C 1.46923 * 120.62835 * 354.20790 * 7 5 4 9 9 C 1.53193 * 108.77374 * 126.37544 * 8 7 5 10 10 C 1.53035 * 109.31399 * 54.63304 * 9 8 7 11 11 H 1.08995 * 109.45868 * 58.65752 * 10 9 8 12 12 N 1.46499 * 109.46117 * 178.62030 * 10 9 8 13 13 C 1.36941 * 119.99425 * 274.99837 * 12 10 9 14 14 H 1.07998 * 120.00159 * 359.97438 * 13 12 10 15 15 C 1.38811 * 119.99838 * 179.97438 * 13 12 10 16 16 N 1.31627 * 120.00076 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 120.00368 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.47058 * 89.99875 * 17 15 13 19 19 H 1.48496 * 109.47751 * 210.00112 * 17 15 13 20 20 H 1.48508 * 109.47049 * 330.00517 * 17 15 13 21 21 C 1.53040 * 109.53982 * 298.63495 * 10 9 8 22 22 C 1.46922 * 120.63130 * 174.19171 * 7 5 4 23 23 H 1.09004 * 109.58890 * 113.69223 * 22 7 5 24 24 C 1.53004 * 109.58612 * 353.41594 * 22 7 5 25 25 H 1.09001 * 109.47304 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47659 * 300.00251 * 1 2 3 27 27 H 1.09002 * 109.46837 * 60.00611 * 1 2 3 28 28 H 1.09002 * 109.47325 * 239.99336 * 2 1 3 29 29 H 1.09004 * 109.46501 * 119.99797 * 2 1 3 30 30 H 1.09002 * 109.47501 * 59.99444 * 3 2 1 31 31 H 1.08997 * 109.47362 * 299.99718 * 3 2 1 32 32 H 1.09000 * 109.47322 * 59.99934 * 4 3 2 33 33 H 1.08995 * 109.47349 * 299.99915 * 4 3 2 34 34 H 1.09000 * 109.58705 * 6.59144 * 8 7 5 35 35 H 1.08991 * 109.58941 * 246.16190 * 8 7 5 36 36 H 1.09008 * 109.49724 * 294.68250 * 9 8 7 37 37 H 1.09001 * 109.49871 * 174.58864 * 9 8 7 38 38 H 0.96995 * 120.00683 * 95.00252 * 12 10 9 39 39 H 0.96994 * 120.00038 * 179.97438 * 16 15 13 40 40 H 1.09003 * 109.50395 * 181.31351 * 21 10 9 41 41 H 1.09003 * 109.49833 * 301.41777 * 21 10 9 42 42 H 1.08998 * 109.47515 * 65.78449 * 24 22 7 43 43 H 1.08997 * 109.47324 * 185.79001 * 24 22 7 44 44 H 1.09002 * 109.47099 * 305.78724 * 24 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.0724 2.8632 0.0000 6 8 3.2843 3.7851 -0.0013 7 7 5.3975 3.1095 -0.0001 8 6 6.3632 2.0097 0.1280 9 6 7.3569 2.0881 -1.0353 10 6 7.9907 3.4807 -1.0666 11 1 8.4930 3.6724 -0.1184 12 7 8.9659 3.5488 -2.1577 13 6 10.2486 3.1131 -1.9577 14 1 10.5414 2.7197 -0.9955 15 6 11.1725 3.1771 -2.9917 16 7 10.8158 3.6570 -4.1643 17 14 12.9225 2.5834 -2.7188 18 1 13.0143 1.1406 -3.0582 19 1 13.8482 3.3558 -3.5857 20 1 13.2961 2.7817 -1.2952 21 6 6.9025 4.5335 -1.2891 22 6 5.9037 4.4828 -0.1287 23 1 6.3995 4.7776 0.7962 24 6 4.7394 5.4341 -0.4120 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 1.8934 -0.5139 -0.8899 29 1 1.8932 -0.5138 0.8901 30 1 1.6766 1.9564 0.8899 31 1 1.6767 1.9563 -0.8900 32 1 3.9337 0.9285 -0.8891 33 1 3.9329 0.9288 0.8908 34 1 5.8370 1.0557 0.0953 35 1 6.8988 2.1018 1.0728 36 1 6.8335 1.9055 -1.9739 37 1 8.1353 1.3371 -0.9002 38 1 8.7030 3.9025 -3.0218 39 1 11.4614 3.7020 -4.8867 40 1 7.3573 5.5231 -1.3346 41 1 6.3832 4.3278 -2.2252 42 1 4.0765 5.4649 0.4527 43 1 5.1266 6.4338 -0.6087 44 1 4.1854 5.0814 -1.2820 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716756558.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:28:38 Heat of formation + Delta-G solvation = -55.211806 kcal Electronic energy + Delta-G solvation = -21207.370161 eV Core-core repulsion = 18158.679501 eV Total energy + Delta-G solvation = -3048.690660 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.52136 -38.81999 -36.41261 -36.06411 -34.03870 -33.65565 -31.31351 -30.72740 -28.32899 -26.15833 -25.57530 -24.36554 -22.90431 -21.80110 -21.45032 -19.93008 -19.07159 -17.69231 -17.16368 -16.80648 -16.69679 -15.92513 -15.50052 -15.43106 -15.02894 -14.84451 -14.51715 -14.36774 -14.29553 -13.57058 -13.42340 -13.31933 -13.08427 -13.04905 -12.85773 -12.64472 -12.58623 -12.17646 -12.15443 -12.06973 -12.00858 -11.87376 -11.78771 -11.68200 -11.41591 -11.34889 -10.88176 -10.03631 -9.53809 -9.00510 -7.92801 -5.21720 1.48676 1.49931 1.58251 1.69948 2.06345 2.57219 3.40449 3.56007 3.74396 3.89431 3.97307 4.08163 4.09337 4.11904 4.26724 4.34139 4.40222 4.48848 4.58478 4.63831 4.66338 4.71820 4.73303 4.84152 4.87960 4.96889 5.02396 5.03247 5.09409 5.14165 5.16479 5.26783 5.33248 5.41390 5.42227 5.51167 5.53070 5.56002 5.73647 6.28812 6.54048 7.27814 7.34687 8.10439 8.33484 9.30940 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.028490 B = 0.003814 C = 0.003539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.574424 B = 7340.396071 C = 7910.549443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.121 4.121 3 C -0.099 4.099 4 C -0.138 4.138 5 C 0.506 3.494 6 O -0.572 6.572 7 N -0.608 5.608 8 C 0.115 3.885 9 C -0.141 4.141 10 C 0.173 3.827 11 H 0.047 0.953 12 N -0.739 5.739 13 C -0.234 4.234 14 H 0.080 0.920 15 C -0.079 4.079 16 N -0.973 5.973 17 Si 0.972 3.028 18 H -0.287 1.287 19 H -0.300 1.300 20 H -0.268 1.268 21 C -0.122 4.122 22 C 0.150 3.850 23 H 0.081 0.919 24 C -0.123 4.123 25 H 0.063 0.937 26 H 0.052 0.948 27 H 0.048 0.952 28 H 0.067 0.933 29 H 0.074 0.926 30 H 0.057 0.943 31 H 0.049 0.951 32 H 0.103 0.897 33 H 0.116 0.884 34 H 0.112 0.888 35 H 0.083 0.917 36 H 0.046 0.954 37 H 0.067 0.933 38 H 0.370 0.630 39 H 0.249 0.751 40 H 0.067 0.933 41 H 0.048 0.952 42 H 0.069 0.931 43 H 0.051 0.949 44 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.449 -6.960 11.759 21.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.159 4.159 3 C -0.137 4.137 4 C -0.177 4.177 5 C 0.297 3.703 6 O -0.452 6.452 7 N -0.342 5.342 8 C -0.007 4.007 9 C -0.182 4.182 10 C 0.064 3.936 11 H 0.065 0.935 12 N -0.378 5.378 13 C -0.366 4.366 14 H 0.098 0.902 15 C -0.271 4.271 16 N -0.624 5.624 17 Si 0.801 3.199 18 H -0.214 1.214 19 H -0.227 1.227 20 H -0.192 1.192 21 C -0.161 4.161 22 C 0.046 3.954 23 H 0.099 0.901 24 C -0.180 4.180 25 H 0.082 0.918 26 H 0.072 0.928 27 H 0.067 0.933 28 H 0.085 0.915 29 H 0.093 0.907 30 H 0.076 0.924 31 H 0.068 0.932 32 H 0.122 0.878 33 H 0.135 0.865 34 H 0.130 0.870 35 H 0.102 0.898 36 H 0.064 0.936 37 H 0.085 0.915 38 H 0.201 0.799 39 H 0.058 0.942 40 H 0.085 0.915 41 H 0.067 0.933 42 H 0.088 0.912 43 H 0.070 0.930 44 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -16.690 -6.535 11.867 21.496 hybrid contribution 1.194 0.147 -0.891 1.497 sum -15.496 -6.388 10.977 20.035 Atomic orbital electron populations 1.21777 0.95709 1.02027 1.01636 1.21529 0.96132 0.95365 1.02846 1.21309 0.92940 0.97468 1.02007 1.21820 0.97697 0.92313 1.05869 1.21318 0.81416 0.92760 0.74847 1.90706 1.56379 1.46647 1.51470 1.48349 1.05947 1.07894 1.71970 1.21900 0.90264 0.90093 0.98490 1.22454 0.98230 0.99450 0.98085 1.20415 0.88672 0.93283 0.91183 0.93470 1.42672 1.08005 1.75554 1.11560 1.19635 0.87833 1.32236 0.96885 0.90250 1.25563 1.02316 1.03286 0.95929 1.69830 1.35371 1.53884 1.03307 0.85163 0.79978 0.77333 0.77438 1.21419 1.22679 1.19245 1.22139 0.96154 0.99719 0.98136 1.21193 0.94534 0.81913 0.97744 0.90093 1.22022 0.96211 0.97095 1.02650 0.91781 0.92849 0.93302 0.91466 0.90742 0.92402 0.93238 0.87839 0.86548 0.86966 0.89830 0.93554 0.91471 0.79921 0.94192 0.91478 0.93299 0.91184 0.93027 0.93802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 9.91 71.98 0.71 -1.32 16 2 C -0.12 -1.63 5.93 30.59 0.18 -1.44 16 3 C -0.10 -1.79 4.50 30.59 0.14 -1.66 16 4 C -0.14 -2.40 4.06 29.85 0.12 -2.28 16 5 C 0.51 12.95 7.50 87.66 0.66 13.61 16 6 O -0.57 -18.09 11.55 -3.03 -0.04 -18.12 16 7 N -0.61 -15.52 2.97 -795.03 -2.36 -17.88 16 8 C 0.12 2.53 6.35 86.36 0.55 3.08 16 9 C -0.14 -4.41 5.66 30.67 0.17 -4.24 16 10 C 0.17 6.46 2.73 45.02 0.12 6.58 16 11 H 0.05 1.77 8.08 -2.39 -0.02 1.75 16 12 N -0.74 -36.46 5.12 -322.83 -1.65 -38.11 16 13 C -0.23 -12.61 9.93 84.03 0.83 -11.77 16 14 H 0.08 4.05 7.83 -2.91 -0.02 4.02 16 15 C -0.08 -4.48 5.50 84.86 0.47 -4.01 16 16 N -0.97 -59.47 13.06 21.65 0.28 -59.18 16 17 Si 0.97 45.40 29.55 68.60 2.03 47.43 16 18 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 19 H -0.30 -14.30 7.11 99.48 0.71 -13.59 16 20 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 21 C -0.12 -4.09 4.84 30.67 0.15 -3.94 16 22 C 0.15 4.23 3.49 44.98 0.16 4.38 16 23 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 24 C -0.12 -3.54 7.61 71.98 0.55 -2.99 16 25 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 26 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 27 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.07 0.82 8.14 -2.38 -0.02 0.81 16 30 H 0.06 1.16 8.10 -2.39 -0.02 1.14 16 31 H 0.05 1.08 8.10 -2.39 -0.02 1.06 16 32 H 0.10 1.63 7.93 -2.39 -0.02 1.61 16 33 H 0.12 1.44 7.71 -2.39 -0.02 1.43 16 34 H 0.11 1.76 5.93 -2.39 -0.01 1.75 16 35 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.05 1.56 8.14 -2.38 -0.02 1.54 16 37 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 38 H 0.37 20.05 7.80 -92.71 -0.72 19.33 16 39 H 0.25 14.84 8.31 -92.71 -0.77 14.07 16 40 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 41 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 42 H 0.07 2.11 6.54 -2.39 -0.02 2.09 16 43 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 44 H 0.04 1.41 6.96 -2.39 -0.02 1.40 16 Total: -1.00 -66.07 342.57 3.30 -62.77 By element: Atomic # 1 Polarization: 28.87 SS G_CDS: 0.23 Total: 29.10 kcal Atomic # 6 Polarization: -10.81 SS G_CDS: 4.81 Total: -6.00 kcal Atomic # 7 Polarization: -111.44 SS G_CDS: -3.73 Total: -115.17 kcal Atomic # 8 Polarization: -18.09 SS G_CDS: -0.04 Total: -18.12 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.43 kcal Total: -66.07 3.30 -62.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716756558.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.556 kcal (2) G-P(sol) polarization free energy of solvation -66.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds