Wall clock time and date at job start Mon Mar 30 2020 00:45:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47357 * 2 1 4 4 C 1.52999 * 109.47466 * 120.00275 * 2 1 3 5 5 H 1.09005 * 109.47033 * 299.99570 * 4 2 1 6 6 C 1.52997 * 109.47264 * 179.97438 * 4 2 1 7 7 C 1.53006 * 109.46841 * 174.99605 * 6 4 2 8 8 N 1.46496 * 109.46693 * 180.02562 * 7 6 4 9 9 C 1.46508 * 120.00181 * 270.00295 * 8 7 6 10 10 C 1.34779 * 120.00304 * 90.00568 * 8 7 6 11 11 O 1.21276 * 119.99651 * 359.97438 * 10 8 7 12 12 C 1.50703 * 120.00322 * 179.97438 * 10 8 7 13 13 C 1.52992 * 117.49646 * 248.74831 * 12 10 8 14 14 C 1.52990 * 117.49767 * 180.08472 * 12 10 8 15 15 N 1.46498 * 109.46890 * 59.99492 * 4 2 1 16 16 C 1.36935 * 120.00239 * 275.00034 * 15 4 2 17 17 H 1.08004 * 120.00069 * 0.02562 * 16 15 4 18 18 C 1.38811 * 120.00368 * 180.02562 * 16 15 4 19 19 N 1.31624 * 119.99540 * 359.72375 * 18 16 15 20 20 Si 1.86800 * 120.00451 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47364 * 179.72253 * 20 18 16 22 22 H 1.48508 * 109.46883 * 299.72375 * 20 18 16 23 23 H 1.48497 * 109.46870 * 59.72186 * 20 18 16 24 24 H 1.09005 * 109.46643 * 299.99916 * 1 2 3 25 25 H 1.08994 * 109.47045 * 59.99526 * 1 2 3 26 26 H 1.08994 * 109.47364 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.46643 * 240.00084 * 2 1 3 28 28 H 1.09003 * 109.47639 * 180.02562 * 3 2 1 29 29 H 1.09004 * 109.47252 * 300.00191 * 3 2 1 30 30 H 1.08999 * 109.47272 * 59.99952 * 3 2 1 31 31 H 1.08996 * 109.47554 * 295.00148 * 6 4 2 32 32 H 1.09001 * 109.46960 * 55.00369 * 6 4 2 33 33 H 1.08991 * 109.47526 * 300.00096 * 7 6 4 34 34 H 1.09001 * 109.46720 * 60.00616 * 7 6 4 35 35 H 1.08994 * 109.47129 * 89.99783 * 9 8 7 36 36 H 1.09001 * 109.47087 * 210.00806 * 9 8 7 37 37 H 1.09000 * 109.46713 * 329.99745 * 9 8 7 38 38 H 1.08999 * 115.54850 * 34.41441 * 12 10 8 39 39 H 1.08997 * 117.50311 * 359.97438 * 13 12 10 40 40 H 1.08999 * 117.49996 * 145.02167 * 13 12 10 41 41 H 1.09001 * 117.49912 * 214.97979 * 14 12 10 42 42 H 1.09003 * 117.50479 * 359.97438 * 14 12 10 43 43 H 0.97004 * 119.99747 * 95.00774 * 15 4 2 44 44 H 0.97000 * 120.00481 * 0.27542 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 1.6768 -0.2074 2.1392 6 6 3.5701 -0.7218 1.2488 7 6 4.0801 -1.3314 2.5562 8 7 5.5451 -1.3314 2.5561 9 6 6.2777 -2.4812 2.0198 10 6 6.2190 -0.2736 3.0494 11 8 5.6126 0.6785 3.4929 12 6 7.7261 -0.2737 3.0498 13 6 8.4320 -0.3623 4.4042 14 6 8.4324 0.9554 3.6251 15 7 1.5517 -2.1025 1.2491 16 6 0.3102 -2.3897 1.7504 17 1 -0.3092 -1.5980 2.1454 18 6 -0.1524 -3.6985 1.7509 19 7 0.6002 -4.6626 1.2645 20 14 -1.8463 -4.0903 2.4340 21 1 -2.1036 -5.5479 2.3138 22 1 -1.9075 -3.6930 3.8636 23 1 -2.8744 -3.3413 1.6677 24 1 -0.3633 0.5139 0.8901 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8901 28 1 3.1301 1.4425 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 3.9330 -1.3114 0.4070 32 1 3.9337 0.3018 1.1591 33 1 3.7172 -0.7418 3.3980 34 1 3.7165 -2.3551 2.6459 35 1 6.4592 -2.3321 0.9555 36 1 7.2301 -2.5803 2.5406 37 1 5.6886 -3.3869 2.1645 38 1 8.1963 -0.7743 2.2034 39 1 7.8066 -0.4201 5.2950 40 1 9.3670 -0.9208 4.4488 41 1 9.3677 1.2632 3.1575 42 1 7.8072 1.7644 4.0030 43 1 2.1078 -2.8135 0.8941 44 1 1.4796 -4.4592 0.9094 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717510825.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:27 Heat of formation + Delta-G solvation = -11.405215 kcal Electronic energy + Delta-G solvation = -21350.024534 eV Core-core repulsion = 18303.233471 eV Total energy + Delta-G solvation = -3046.791063 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.07084 -37.59908 -36.32034 -35.35287 -33.34177 -31.50587 -29.45392 -26.93383 -26.41781 -25.64623 -23.70437 -22.72417 -22.58632 -21.02169 -19.28336 -18.81543 -17.48879 -17.30929 -16.06123 -15.50114 -14.93548 -14.76621 -14.35474 -14.09893 -13.69384 -13.55601 -13.35760 -12.97683 -12.68302 -12.61140 -12.20008 -11.93011 -11.78858 -11.71316 -11.56477 -11.19358 -10.87127 -10.79225 -10.75585 -10.67826 -10.30008 -10.26050 -10.08615 -9.96045 -9.76632 -9.65581 -9.12138 -8.85897 -8.48929 -6.97775 -6.05733 -3.04648 2.51218 3.06593 3.53824 3.56368 3.71250 3.73546 4.41656 4.60843 4.69824 4.70408 4.92979 5.12303 5.30387 5.36707 5.37527 5.46100 5.48776 5.56423 5.62528 5.68992 5.72777 5.74707 5.82484 5.93037 5.93556 6.08757 6.10843 6.18081 6.28928 6.40340 6.44731 6.53627 6.66094 6.73893 6.78990 6.86062 7.14453 7.34454 7.49028 7.87417 8.26498 8.78784 9.26249 10.12725 10.28967 11.42090 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.020490 B = 0.004741 C = 0.004149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.188552 B = 5904.096104 C = 6746.698227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.109 4.109 3 C -0.146 4.146 4 C 0.190 3.810 5 H 0.049 0.951 6 C -0.136 4.136 7 C 0.120 3.880 8 N -0.610 5.610 9 C 0.078 3.922 10 C 0.539 3.461 11 O -0.541 6.541 12 C -0.193 4.193 13 C -0.154 4.154 14 C -0.150 4.150 15 N -0.733 5.733 16 C -0.318 4.318 17 H 0.066 0.934 18 C -0.046 4.046 19 N -0.947 5.947 20 Si 1.074 2.926 21 H -0.286 1.286 22 H -0.296 1.296 23 H -0.296 1.296 24 H 0.040 0.960 25 H 0.028 0.972 26 H 0.085 0.915 27 H 0.056 0.944 28 H 0.049 0.951 29 H 0.042 0.958 30 H 0.049 0.951 31 H 0.056 0.944 32 H 0.065 0.935 33 H 0.079 0.921 34 H 0.088 0.912 35 H 0.054 0.946 36 H 0.070 0.930 37 H 0.076 0.924 38 H 0.122 0.878 39 H 0.099 0.901 40 H 0.103 0.897 41 H 0.101 0.899 42 H 0.107 0.893 43 H 0.364 0.636 44 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.892 7.551 1.128 16.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.131 4.131 3 C -0.204 4.204 4 C 0.079 3.921 5 H 0.067 0.933 6 C -0.175 4.175 7 C -0.001 4.001 8 N -0.342 5.342 9 C -0.065 4.065 10 C 0.326 3.674 11 O -0.419 6.419 12 C -0.214 4.214 13 C -0.191 4.191 14 C -0.187 4.187 15 N -0.375 5.375 16 C -0.450 4.450 17 H 0.084 0.916 18 C -0.244 4.244 19 N -0.593 5.593 20 Si 0.906 3.094 21 H -0.212 1.212 22 H -0.224 1.224 23 H -0.223 1.223 24 H 0.059 0.941 25 H 0.047 0.953 26 H 0.104 0.896 27 H 0.074 0.926 28 H 0.068 0.932 29 H 0.061 0.939 30 H 0.068 0.932 31 H 0.075 0.925 32 H 0.084 0.916 33 H 0.097 0.903 34 H 0.106 0.894 35 H 0.073 0.927 36 H 0.088 0.912 37 H 0.095 0.905 38 H 0.140 0.860 39 H 0.117 0.883 40 H 0.121 0.879 41 H 0.119 0.881 42 H 0.125 0.875 43 H 0.198 0.802 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 13.297 6.952 1.763 15.108 hybrid contribution 1.250 0.934 -0.667 1.697 sum 14.547 7.886 1.096 16.583 Atomic orbital electron populations 1.21821 0.95169 1.03798 0.98802 1.21733 0.96714 0.94411 1.00233 1.21917 1.00313 0.97414 1.00706 1.20158 0.89702 0.86957 0.95239 0.93291 1.22223 0.97561 1.00735 0.97022 1.21585 0.76648 1.03017 0.98860 1.47896 1.07627 1.17767 1.60927 1.21819 0.97140 0.88901 0.98685 1.19656 0.88257 0.82155 0.77294 1.90683 1.69949 1.34326 1.46923 1.22244 0.92499 1.06598 1.00092 1.22927 1.01655 1.00983 0.93551 1.22949 1.01540 0.91816 1.02402 1.42469 1.18159 1.02251 1.74667 1.20020 0.93634 0.95148 1.36150 0.91621 1.25643 1.05690 0.91477 1.01561 1.70892 1.11395 1.33189 1.43815 0.83310 0.74684 0.75935 0.75508 1.21196 1.22391 1.22345 0.94116 0.95266 0.89572 0.92558 0.93235 0.93855 0.93214 0.92549 0.91601 0.90279 0.89420 0.92705 0.91164 0.90527 0.85992 0.88293 0.87902 0.88080 0.87452 0.80236 0.93544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.72 8.26 37.16 0.31 -2.41 16 2 C -0.11 -2.04 2.69 -90.62 -0.24 -2.28 16 3 C -0.15 -2.32 8.85 37.15 0.33 -1.99 16 4 C 0.19 3.80 2.02 -67.93 -0.14 3.66 16 5 H 0.05 1.06 8.08 -51.93 -0.42 0.64 16 6 C -0.14 -2.36 4.86 -26.73 -0.13 -2.49 16 7 C 0.12 2.07 5.34 -4.04 -0.02 2.05 16 8 N -0.61 -8.80 2.87 -181.57 -0.52 -9.32 16 9 C 0.08 0.84 10.05 59.85 0.60 1.44 16 10 C 0.54 8.06 7.46 -10.98 -0.08 7.97 16 11 O -0.54 -10.13 15.84 5.56 0.09 -10.04 16 12 C -0.19 -2.06 4.79 -91.78 -0.44 -2.50 16 13 C -0.15 -1.38 10.24 -26.70 -0.27 -1.65 16 14 C -0.15 -1.44 10.05 -26.70 -0.27 -1.70 16 15 N -0.73 -17.36 4.45 -53.43 -0.24 -17.60 16 16 C -0.32 -8.51 7.57 -15.06 -0.11 -8.62 16 17 H 0.07 1.76 7.39 -52.48 -0.39 1.37 16 18 C -0.05 -1.31 5.50 -17.43 -0.10 -1.40 16 19 N -0.95 -28.37 13.70 55.49 0.76 -27.61 16 20 Si 1.07 25.68 29.92 -169.99 -5.09 20.59 16 21 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 22 H -0.30 -6.84 7.11 56.52 0.40 -6.44 16 23 H -0.30 -6.80 7.11 56.52 0.40 -6.40 16 24 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.09 1.97 6.01 -51.93 -0.31 1.66 16 27 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 28 H 0.05 0.75 6.32 -51.93 -0.33 0.42 16 29 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 31 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 32 H 0.07 1.14 6.18 -51.93 -0.32 0.82 16 33 H 0.08 1.51 7.42 -51.93 -0.39 1.12 16 34 H 0.09 1.62 7.50 -51.93 -0.39 1.23 16 35 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.07 0.59 6.64 -51.93 -0.34 0.25 16 37 H 0.08 0.85 7.89 -51.93 -0.41 0.44 16 38 H 0.12 1.04 7.27 -51.93 -0.38 0.66 16 39 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.11 1.22 7.67 -51.93 -0.40 0.82 16 43 H 0.36 8.92 6.63 -40.82 -0.27 8.65 16 44 H 0.25 7.44 6.77 -40.82 -0.28 7.16 16 LS Contribution 348.97 15.07 5.26 5.26 Total: -1.00 -31.43 348.97 -7.95 -39.38 By element: Atomic # 1 Polarization: 16.91 SS G_CDS: -7.64 Total: 9.27 kcal Atomic # 6 Polarization: -9.36 SS G_CDS: -0.57 Total: -9.93 kcal Atomic # 7 Polarization: -54.53 SS G_CDS: 0.00 Total: -54.53 kcal Atomic # 8 Polarization: -10.13 SS G_CDS: 0.09 Total: -10.04 kcal Atomic # 14 Polarization: 25.68 SS G_CDS: -5.09 Total: 20.59 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.43 -7.95 -39.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717510825.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.971 kcal (2) G-P(sol) polarization free energy of solvation -31.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds