Wall clock time and date at job start Mon Mar 30 2020 00:45:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47357 * 2 1 4 4 C 1.52999 * 109.47466 * 120.00275 * 2 1 3 5 5 H 1.09005 * 109.47033 * 299.99570 * 4 2 1 6 6 C 1.52997 * 109.47264 * 179.97438 * 4 2 1 7 7 C 1.53006 * 109.46841 * 174.99605 * 6 4 2 8 8 N 1.46496 * 109.46693 * 180.02562 * 7 6 4 9 9 C 1.46508 * 120.00181 * 270.00295 * 8 7 6 10 10 C 1.34779 * 120.00304 * 90.00568 * 8 7 6 11 11 O 1.21276 * 119.99651 * 359.97438 * 10 8 7 12 12 C 1.50703 * 120.00322 * 179.97438 * 10 8 7 13 13 C 1.52992 * 117.49646 * 248.74831 * 12 10 8 14 14 C 1.52990 * 117.49767 * 180.08472 * 12 10 8 15 15 N 1.46498 * 109.46890 * 59.99492 * 4 2 1 16 16 C 1.36935 * 120.00239 * 275.00034 * 15 4 2 17 17 H 1.08004 * 120.00069 * 0.02562 * 16 15 4 18 18 C 1.38811 * 120.00368 * 180.02562 * 16 15 4 19 19 N 1.31624 * 119.99540 * 359.72375 * 18 16 15 20 20 Si 1.86800 * 120.00451 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47364 * 179.72253 * 20 18 16 22 22 H 1.48508 * 109.46883 * 299.72375 * 20 18 16 23 23 H 1.48497 * 109.46870 * 59.72186 * 20 18 16 24 24 H 1.09005 * 109.46643 * 299.99916 * 1 2 3 25 25 H 1.08994 * 109.47045 * 59.99526 * 1 2 3 26 26 H 1.08994 * 109.47364 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.46643 * 240.00084 * 2 1 3 28 28 H 1.09003 * 109.47639 * 180.02562 * 3 2 1 29 29 H 1.09004 * 109.47252 * 300.00191 * 3 2 1 30 30 H 1.08999 * 109.47272 * 59.99952 * 3 2 1 31 31 H 1.08996 * 109.47554 * 295.00148 * 6 4 2 32 32 H 1.09001 * 109.46960 * 55.00369 * 6 4 2 33 33 H 1.08991 * 109.47526 * 300.00096 * 7 6 4 34 34 H 1.09001 * 109.46720 * 60.00616 * 7 6 4 35 35 H 1.08994 * 109.47129 * 89.99783 * 9 8 7 36 36 H 1.09001 * 109.47087 * 210.00806 * 9 8 7 37 37 H 1.09000 * 109.46713 * 329.99745 * 9 8 7 38 38 H 1.08999 * 115.54850 * 34.41441 * 12 10 8 39 39 H 1.08997 * 117.50311 * 359.97438 * 13 12 10 40 40 H 1.08999 * 117.49996 * 145.02167 * 13 12 10 41 41 H 1.09001 * 117.49912 * 214.97979 * 14 12 10 42 42 H 1.09003 * 117.50479 * 359.97438 * 14 12 10 43 43 H 0.97004 * 119.99747 * 95.00774 * 15 4 2 44 44 H 0.97000 * 120.00481 * 0.27542 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 1.6768 -0.2074 2.1392 6 6 3.5701 -0.7218 1.2488 7 6 4.0801 -1.3314 2.5562 8 7 5.5451 -1.3314 2.5561 9 6 6.2777 -2.4812 2.0198 10 6 6.2190 -0.2736 3.0494 11 8 5.6126 0.6785 3.4929 12 6 7.7261 -0.2737 3.0498 13 6 8.4320 -0.3623 4.4042 14 6 8.4324 0.9554 3.6251 15 7 1.5517 -2.1025 1.2491 16 6 0.3102 -2.3897 1.7504 17 1 -0.3092 -1.5980 2.1454 18 6 -0.1524 -3.6985 1.7509 19 7 0.6002 -4.6626 1.2645 20 14 -1.8463 -4.0903 2.4340 21 1 -2.1036 -5.5479 2.3138 22 1 -1.9075 -3.6930 3.8636 23 1 -2.8744 -3.3413 1.6677 24 1 -0.3633 0.5139 0.8901 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8901 28 1 3.1301 1.4425 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 3.9330 -1.3114 0.4070 32 1 3.9337 0.3018 1.1591 33 1 3.7172 -0.7418 3.3980 34 1 3.7165 -2.3551 2.6459 35 1 6.4592 -2.3321 0.9555 36 1 7.2301 -2.5803 2.5406 37 1 5.6886 -3.3869 2.1645 38 1 8.1963 -0.7743 2.2034 39 1 7.8066 -0.4201 5.2950 40 1 9.3670 -0.9208 4.4488 41 1 9.3677 1.2632 3.1575 42 1 7.8072 1.7644 4.0030 43 1 2.1078 -2.8135 0.8941 44 1 1.4796 -4.4592 0.9094 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717510825.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:27 Heat of formation + Delta-G solvation = -29.960579 kcal Electronic energy + Delta-G solvation = -21350.829155 eV Core-core repulsion = 18303.233471 eV Total energy + Delta-G solvation = -3047.595684 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.21041 -39.16246 -37.30533 -36.57380 -35.27478 -33.02285 -31.27346 -28.24682 -27.60757 -27.10231 -25.39567 -24.20842 -23.32772 -22.43622 -20.86861 -19.90702 -19.42046 -18.45300 -17.30431 -16.76658 -16.40954 -16.29290 -15.63855 -15.49438 -15.41350 -15.10980 -14.68802 -14.19614 -13.95143 -13.67535 -13.56092 -13.18458 -13.16720 -12.96512 -12.83627 -12.68259 -12.57266 -12.43796 -11.94723 -11.88993 -11.83422 -11.56259 -11.53023 -11.49824 -11.40607 -11.14977 -10.88627 -10.77743 -9.73520 -9.00429 -8.27738 -5.20456 1.42962 1.59348 1.67723 1.83643 1.94991 2.74161 2.90758 3.47053 3.48055 3.73343 3.82210 3.85296 3.97714 4.05242 4.10874 4.20905 4.25165 4.34026 4.40440 4.55883 4.60260 4.64568 4.67774 4.72425 4.82773 4.85788 4.89062 4.93899 4.98936 5.02963 5.07367 5.10190 5.21895 5.23863 5.31906 5.48816 5.55869 5.66221 5.72533 6.37135 6.60104 7.11269 7.18241 8.08345 8.21031 9.23887 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.020490 B = 0.004741 C = 0.004149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.188552 B = 5904.096104 C = 6746.698227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.106 4.106 3 C -0.137 4.137 4 C 0.189 3.811 5 H 0.029 0.971 6 C -0.119 4.119 7 C 0.130 3.870 8 N -0.611 5.611 9 C 0.073 3.927 10 C 0.529 3.471 11 O -0.590 6.590 12 C -0.200 4.200 13 C -0.140 4.140 14 C -0.150 4.150 15 N -0.738 5.738 16 C -0.305 4.305 17 H 0.062 0.938 18 C -0.103 4.103 19 N -0.979 5.979 20 Si 1.116 2.884 21 H -0.295 1.295 22 H -0.284 1.284 23 H -0.282 1.282 24 H 0.038 0.962 25 H 0.052 0.948 26 H 0.049 0.951 27 H 0.053 0.947 28 H 0.057 0.943 29 H 0.063 0.937 30 H 0.047 0.953 31 H 0.064 0.936 32 H 0.071 0.929 33 H 0.052 0.948 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.101 0.899 37 H 0.069 0.931 38 H 0.153 0.847 39 H 0.081 0.919 40 H 0.137 0.863 41 H 0.131 0.869 42 H 0.081 0.919 43 H 0.360 0.640 44 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.699 8.284 0.536 18.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.127 4.127 3 C -0.194 4.194 4 C 0.080 3.920 5 H 0.047 0.953 6 C -0.158 4.158 7 C 0.007 3.993 8 N -0.342 5.342 9 C -0.069 4.069 10 C 0.319 3.681 11 O -0.471 6.471 12 C -0.220 4.220 13 C -0.177 4.177 14 C -0.187 4.187 15 N -0.380 5.380 16 C -0.436 4.436 17 H 0.080 0.920 18 C -0.294 4.294 19 N -0.628 5.628 20 Si 0.943 3.057 21 H -0.221 1.221 22 H -0.210 1.210 23 H -0.208 1.208 24 H 0.057 0.943 25 H 0.071 0.929 26 H 0.068 0.932 27 H 0.071 0.929 28 H 0.076 0.924 29 H 0.082 0.918 30 H 0.067 0.933 31 H 0.083 0.917 32 H 0.089 0.911 33 H 0.071 0.929 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.119 0.881 37 H 0.088 0.912 38 H 0.170 0.830 39 H 0.100 0.900 40 H 0.155 0.845 41 H 0.149 0.851 42 H 0.100 0.900 43 H 0.192 0.808 44 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 15.135 7.714 1.161 17.028 hybrid contribution 0.718 0.783 -0.466 1.161 sum 15.854 8.497 0.695 18.001 Atomic orbital electron populations 1.21727 0.95849 1.01627 0.99892 1.21633 0.96087 0.96173 0.98825 1.21818 1.00777 0.95187 1.01660 1.20283 0.91491 0.85035 0.95237 0.95280 1.22028 0.95399 1.01091 0.97284 1.21228 0.79048 1.01226 0.97801 1.47974 1.06408 1.18975 1.60859 1.22064 0.97850 0.87086 0.99902 1.20504 0.90241 0.81263 0.76080 1.90655 1.71345 1.36118 1.48974 1.22288 0.89193 1.08280 1.02283 1.23048 1.02200 1.00664 0.91805 1.23032 1.02053 0.91156 1.02509 1.42545 1.17287 1.03677 1.74474 1.20207 0.94322 0.94814 1.34300 0.92039 1.26803 1.08346 0.91831 1.02438 1.70984 1.11626 1.33936 1.46248 0.82746 0.71857 0.75289 0.75808 1.22120 1.21021 1.20799 0.94321 0.92873 0.93230 0.92855 0.92416 0.91803 0.93346 0.91749 0.91084 0.92914 0.91146 0.91151 0.88093 0.91224 0.82975 0.90006 0.84455 0.85053 0.90013 0.80777 0.94504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.16 8.26 71.98 0.59 -4.56 16 2 C -0.11 -3.86 2.69 -10.80 -0.03 -3.89 16 3 C -0.14 -4.07 8.85 71.98 0.64 -3.43 16 4 C 0.19 7.63 2.02 44.99 0.09 7.72 16 5 H 0.03 1.30 8.08 -2.38 -0.02 1.28 16 6 C -0.12 -4.12 4.86 30.60 0.15 -3.97 16 7 C 0.13 4.59 5.34 86.38 0.46 5.05 16 8 N -0.61 -17.30 2.87 -846.75 -2.43 -19.73 16 9 C 0.07 1.43 10.05 127.77 1.28 2.71 16 10 C 0.53 15.51 7.46 87.66 0.65 16.16 16 11 O -0.59 -22.57 15.84 -3.02 -0.05 -22.62 16 12 C -0.20 -3.75 4.79 -11.54 -0.06 -3.81 16 13 C -0.14 -2.12 10.24 30.62 0.31 -1.81 16 14 C -0.15 -2.55 10.05 30.62 0.31 -2.24 16 15 N -0.74 -35.74 4.45 -322.94 -1.44 -37.18 16 16 C -0.30 -16.59 7.57 84.03 0.64 -15.95 16 17 H 0.06 3.35 7.39 -2.91 -0.02 3.33 16 18 C -0.10 -5.86 5.50 84.86 0.47 -5.39 16 19 N -0.98 -59.87 13.70 21.65 0.30 -59.57 16 20 Si 1.12 52.31 29.92 68.60 2.05 54.37 16 21 H -0.29 -14.17 7.11 99.48 0.71 -13.47 16 22 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 23 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 24 H 0.04 1.47 8.14 -2.38 -0.02 1.45 16 25 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 26 H 0.05 2.27 6.01 -2.39 -0.01 2.26 16 27 H 0.05 1.99 8.14 -2.38 -0.02 1.97 16 28 H 0.06 1.63 6.32 -2.39 -0.02 1.61 16 29 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 30 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 32 H 0.07 2.41 6.18 -2.39 -0.01 2.40 16 33 H 0.05 2.12 7.42 -2.39 -0.02 2.10 16 34 H 0.07 2.71 7.50 -2.39 -0.02 2.69 16 35 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.10 1.37 6.64 -2.39 -0.02 1.35 16 37 H 0.07 1.48 7.89 -2.39 -0.02 1.46 16 38 H 0.15 1.94 7.27 -2.39 -0.02 1.92 16 39 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 40 H 0.14 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.13 1.42 8.14 -2.39 -0.02 1.40 16 42 H 0.08 1.83 7.67 -2.39 -0.02 1.81 16 43 H 0.36 18.10 6.63 -92.71 -0.61 17.48 16 44 H 0.24 14.77 6.77 -92.71 -0.63 14.14 16 Total: -1.00 -70.15 348.97 4.43 -65.72 By element: Atomic # 1 Polarization: 31.93 SS G_CDS: 0.49 Total: 32.42 kcal Atomic # 6 Polarization: -18.91 SS G_CDS: 5.51 Total: -13.40 kcal Atomic # 7 Polarization: -112.91 SS G_CDS: -3.57 Total: -116.48 kcal Atomic # 8 Polarization: -22.57 SS G_CDS: -0.05 Total: -22.62 kcal Atomic # 14 Polarization: 52.31 SS G_CDS: 2.05 Total: 54.37 kcal Total: -70.15 4.43 -65.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717510825.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.755 kcal (2) G-P(sol) polarization free energy of solvation -70.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds