Wall clock time and date at job start Mon Mar 30 2020 00:32:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47085 * 2 1 4 4 C 1.53002 * 109.46869 * 120.00390 * 2 1 3 5 5 C 1.50695 * 109.47004 * 64.99975 * 4 2 1 6 6 O 1.21274 * 120.00413 * 0.27039 * 5 4 2 7 7 N 1.34784 * 119.99635 * 179.97438 * 5 4 2 8 8 C 1.46499 * 119.99893 * 0.02562 * 7 5 4 9 9 C 1.46499 * 119.99971 * 179.97438 * 7 5 4 10 10 H 1.09004 * 109.46973 * 359.97438 * 9 7 5 11 11 C 1.52996 * 109.47349 * 119.99826 * 9 7 5 12 12 N 1.46506 * 109.46890 * 305.00352 * 11 9 7 13 13 C 1.36943 * 119.99624 * 179.97438 * 12 11 9 14 14 H 1.07995 * 120.00086 * 0.02562 * 13 12 11 15 15 C 1.38813 * 119.99663 * 179.97438 * 13 12 11 16 16 N 1.31615 * 120.00157 * 359.97438 * 15 13 12 17 17 Si 1.86795 * 119.99774 * 180.02562 * 15 13 12 18 18 H 1.48508 * 109.47386 * 90.00144 * 17 15 13 19 19 H 1.48499 * 109.47027 * 209.99978 * 17 15 13 20 20 H 1.48497 * 109.47355 * 330.00113 * 17 15 13 21 21 C 1.52998 * 109.47194 * 240.00124 * 9 7 5 22 22 C 1.52997 * 117.49694 * 248.74390 * 21 9 7 23 23 C 1.53005 * 117.49737 * 180.08693 * 21 9 7 24 24 H 1.09008 * 109.47105 * 59.99700 * 1 2 3 25 25 H 1.09004 * 109.47431 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47371 * 299.99751 * 1 2 3 27 27 H 1.08998 * 109.46672 * 239.99996 * 2 1 3 28 28 H 1.08998 * 109.47014 * 179.97438 * 3 2 1 29 29 H 1.08996 * 109.47804 * 300.00169 * 3 2 1 30 30 H 1.09006 * 109.47177 * 60.00127 * 3 2 1 31 31 H 1.09005 * 109.47089 * 304.99723 * 4 2 1 32 32 H 1.09002 * 109.46787 * 185.00065 * 4 2 1 33 33 H 1.08996 * 109.47008 * 90.00348 * 8 7 5 34 34 H 1.08997 * 109.46865 * 210.00034 * 8 7 5 35 35 H 1.08998 * 109.47058 * 329.99547 * 8 7 5 36 36 H 1.09006 * 109.46900 * 64.99945 * 11 9 7 37 37 H 1.09004 * 109.47581 * 185.00180 * 11 9 7 38 38 H 0.96995 * 120.00242 * 359.97438 * 12 11 9 39 39 H 0.96995 * 120.00321 * 180.02562 * 16 15 13 40 40 H 1.09002 * 115.55183 * 34.41659 * 21 9 7 41 41 H 1.08997 * 117.50093 * 0.02562 * 22 21 9 42 42 H 1.09008 * 117.49588 * 145.01798 * 22 21 9 43 43 H 1.08998 * 117.49583 * 214.97651 * 23 21 9 44 44 H 1.08998 * 117.49890 * 359.97273 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 1.6413 -2.1733 1.1887 6 8 1.0156 -2.5913 0.2377 7 7 1.9853 -3.0088 2.1889 8 6 2.7462 -2.5052 3.3350 9 6 1.5972 -4.4203 2.1304 10 1 1.0405 -4.6063 1.2119 11 6 2.8519 -5.2956 2.1531 12 7 3.7492 -4.8909 1.0680 13 6 4.9435 -5.5369 0.8904 14 1 5.2237 -6.3449 1.5499 15 6 5.7935 -5.1539 -0.1381 16 7 5.4513 -4.1702 -0.9428 17 14 7.4223 -6.0355 -0.3808 18 1 7.2307 -7.1850 -1.3014 19 1 8.4125 -5.0946 -0.9634 20 1 7.9187 -6.5280 0.9292 21 6 0.7180 -4.7579 3.3362 22 6 1.3042 -5.6889 4.3993 23 6 0.2082 -6.1953 3.4584 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 3.1300 1.4424 0.0005 29 1 1.6767 1.9564 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6053 -0.2618 2.1370 32 1 3.1263 -0.6444 1.2951 33 1 2.0569 -2.1599 4.1054 34 1 3.3694 -3.3042 3.7367 35 1 3.3787 -1.6770 3.0155 36 1 3.3611 -5.1759 3.1094 37 1 2.5689 -6.3398 2.0203 38 1 3.4973 -4.1655 0.4754 39 1 6.0451 -3.9028 -1.6617 40 1 0.0581 -3.9593 3.6752 41 1 2.3164 -6.0606 4.2400 42 1 1.0297 -5.5030 5.4378 43 1 -0.7870 -6.3423 3.8781 44 1 0.4987 -6.9003 2.6795 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717723466.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:32:04 Heat of formation + Delta-G solvation = -6.299196 kcal Electronic energy + Delta-G solvation = -21833.537298 eV Core-core repulsion = 18786.967648 eV Total energy + Delta-G solvation = -3046.569650 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.92104 -37.93095 -35.41954 -34.77035 -33.94899 -31.14592 -28.90407 -27.27181 -26.92953 -26.16438 -24.19449 -22.52310 -21.89519 -20.78008 -19.28071 -18.38027 -17.06527 -16.70202 -16.21567 -15.55605 -15.08166 -14.51041 -14.37608 -13.93219 -13.71569 -13.35157 -13.13866 -12.87263 -12.65936 -12.39481 -12.14971 -11.99898 -11.79905 -11.67711 -11.46593 -11.25151 -11.01575 -10.85502 -10.78436 -10.71461 -10.61558 -10.44305 -10.27622 -10.07230 -9.71767 -9.67095 -9.14044 -8.83278 -8.14661 -6.87313 -5.71376 -3.00675 3.13753 3.37441 3.44851 3.49573 3.51364 4.01816 4.60287 4.87808 4.91897 4.98748 5.11312 5.13263 5.16687 5.35312 5.48399 5.54236 5.58993 5.63746 5.70697 5.76489 5.77817 5.83880 5.86117 5.90295 5.96674 6.01458 6.05202 6.09719 6.18878 6.28776 6.31784 6.33436 6.42458 6.52260 6.60683 6.63177 6.75449 7.07169 7.71469 7.86982 8.46101 8.69641 9.57627 10.16593 10.52210 11.50645 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.012086 B = 0.007308 C = 0.004994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2316.085358 B = 3830.510820 C = 5604.970535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.083 4.083 3 C -0.146 4.146 4 C -0.132 4.132 5 C 0.518 3.482 6 O -0.538 6.538 7 N -0.597 5.597 8 C 0.085 3.915 9 C 0.161 3.839 10 H 0.103 0.897 11 C 0.143 3.857 12 N -0.727 5.727 13 C -0.241 4.241 14 H 0.068 0.932 15 C -0.012 4.012 16 N -0.928 5.928 17 Si 0.905 3.095 18 H -0.290 1.290 19 H -0.292 1.292 20 H -0.283 1.283 21 C -0.157 4.157 22 C -0.184 4.184 23 C -0.174 4.174 24 H 0.048 0.952 25 H 0.074 0.926 26 H 0.042 0.958 27 H 0.082 0.918 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.050 0.950 31 H 0.084 0.916 32 H 0.094 0.906 33 H 0.046 0.954 34 H 0.076 0.924 35 H 0.068 0.932 36 H 0.025 0.975 37 H 0.026 0.974 38 H 0.387 0.613 39 H 0.254 0.746 40 H 0.101 0.899 41 H 0.106 0.894 42 H 0.088 0.912 43 H 0.090 0.910 44 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.608 6.945 10.139 15.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.101 4.101 3 C -0.203 4.203 4 C -0.172 4.172 5 C 0.307 3.693 6 O -0.415 6.415 7 N -0.329 5.329 8 C -0.058 4.058 9 C 0.057 3.943 10 H 0.120 0.880 11 C 0.015 3.985 12 N -0.371 5.371 13 C -0.372 4.372 14 H 0.086 0.914 15 C -0.209 4.209 16 N -0.576 5.576 17 Si 0.736 3.264 18 H -0.218 1.218 19 H -0.218 1.218 20 H -0.208 1.208 21 C -0.176 4.176 22 C -0.221 4.221 23 C -0.212 4.212 24 H 0.067 0.933 25 H 0.093 0.907 26 H 0.062 0.938 27 H 0.100 0.900 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.103 0.897 32 H 0.113 0.887 33 H 0.064 0.936 34 H 0.094 0.906 35 H 0.086 0.914 36 H 0.043 0.957 37 H 0.044 0.956 38 H 0.221 0.779 39 H 0.064 0.936 40 H 0.119 0.881 41 H 0.125 0.875 42 H 0.106 0.894 43 H 0.109 0.891 44 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -9.786 6.629 9.650 15.259 hybrid contribution 0.995 -0.255 -0.201 1.047 sum -8.791 6.374 9.449 14.394 Atomic orbital electron populations 1.21939 0.95143 1.03261 1.00377 1.20864 0.96200 0.95134 0.97943 1.21844 1.01091 0.95991 1.01378 1.21748 1.03023 0.92399 1.00049 1.20597 0.78834 0.88200 0.81680 1.90638 1.40709 1.77789 1.32348 1.47631 1.54932 1.08966 1.21407 1.21656 0.95431 1.00542 0.88179 1.20789 0.95478 0.80449 0.97581 0.87955 1.21105 0.89558 0.95236 0.92623 1.42303 1.18858 1.41953 1.34003 1.19193 0.94535 1.12443 1.11026 0.91361 1.24739 0.98895 0.98909 0.98319 1.69685 1.37466 1.30426 1.20037 0.86222 0.83775 0.78712 0.77647 1.21771 1.21827 1.20849 1.22585 1.02492 0.93769 0.98791 1.23183 0.99446 1.04198 0.95230 1.22949 0.98498 0.96706 1.03031 0.93297 0.90675 0.93842 0.90005 0.92578 0.92678 0.93056 0.89716 0.88735 0.93557 0.90562 0.91375 0.95726 0.95646 0.77920 0.93585 0.88065 0.87549 0.89364 0.89136 0.88405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 8.93 37.16 0.33 -1.69 16 2 C -0.08 -1.17 2.57 -90.62 -0.23 -1.40 16 3 C -0.15 -1.66 9.19 37.16 0.34 -1.32 16 4 C -0.13 -1.89 3.73 -27.88 -0.10 -1.99 16 5 C 0.52 9.33 7.09 -10.98 -0.08 9.25 16 6 O -0.54 -11.51 13.30 5.56 0.07 -11.44 16 7 N -0.60 -10.03 2.24 -173.94 -0.39 -10.42 16 8 C 0.09 1.17 9.61 59.85 0.58 1.74 16 9 C 0.16 2.83 2.59 -67.93 -0.18 2.66 16 10 H 0.10 2.10 6.90 -51.93 -0.36 1.74 16 11 C 0.14 2.91 4.14 -4.04 -0.02 2.89 16 12 N -0.73 -18.86 5.43 -59.90 -0.33 -19.19 16 13 C -0.24 -6.83 9.99 -15.06 -0.15 -6.98 16 14 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 15 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 16 N -0.93 -28.69 13.06 55.49 0.72 -27.97 16 17 Si 0.91 22.70 29.55 -169.99 -5.02 17.67 16 18 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 19 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 20 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 21 C -0.16 -2.17 5.48 -90.62 -0.50 -2.67 16 22 C -0.18 -2.27 9.59 -26.70 -0.26 -2.52 16 23 C -0.17 -2.18 9.94 -26.69 -0.27 -2.44 16 24 H 0.05 0.60 8.14 -51.92 -0.42 0.18 16 25 H 0.07 1.20 5.96 -51.93 -0.31 0.89 16 26 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16 27 H 0.08 1.39 7.95 -51.93 -0.41 0.98 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.08 0.98 8.11 -51.93 -0.42 0.56 16 32 H 0.09 1.36 7.40 -51.93 -0.38 0.97 16 33 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.08 1.12 6.53 -51.93 -0.34 0.78 16 35 H 0.07 0.88 6.44 -51.93 -0.33 0.55 16 36 H 0.03 0.49 5.34 -51.93 -0.28 0.21 16 37 H 0.03 0.53 7.44 -51.93 -0.39 0.15 16 38 H 0.39 10.92 7.06 -40.82 -0.29 10.64 16 39 H 0.25 7.62 8.31 -40.82 -0.34 7.28 16 40 H 0.10 1.33 8.14 -51.93 -0.42 0.91 16 41 H 0.11 1.45 5.80 -51.93 -0.30 1.14 16 42 H 0.09 0.93 8.14 -51.92 -0.42 0.50 16 43 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 44 H 0.10 1.30 7.66 -51.93 -0.40 0.91 16 LS Contribution 345.28 15.07 5.20 5.20 Total: -1.00 -32.44 345.28 -7.92 -40.37 By element: Atomic # 1 Polarization: 18.27 SS G_CDS: -7.56 Total: 10.71 kcal Atomic # 6 Polarization: -4.31 SS G_CDS: -0.62 Total: -4.93 kcal Atomic # 7 Polarization: -57.59 SS G_CDS: 0.01 Total: -57.58 kcal Atomic # 8 Polarization: -11.51 SS G_CDS: 0.07 Total: -11.44 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -5.02 Total: 17.67 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -32.44 -7.92 -40.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717723466.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.067 kcal (2) G-P(sol) polarization free energy of solvation -32.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds