Wall clock time and date at job start Mon Mar 30 2020 00:32:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47085 * 2 1 4 4 C 1.53002 * 109.46869 * 120.00390 * 2 1 3 5 5 C 1.50695 * 109.47004 * 64.99975 * 4 2 1 6 6 O 1.21274 * 120.00413 * 0.27039 * 5 4 2 7 7 N 1.34784 * 119.99635 * 179.97438 * 5 4 2 8 8 C 1.46499 * 119.99893 * 0.02562 * 7 5 4 9 9 C 1.46499 * 119.99971 * 179.97438 * 7 5 4 10 10 H 1.09004 * 109.46973 * 359.97438 * 9 7 5 11 11 C 1.52996 * 109.47349 * 119.99826 * 9 7 5 12 12 N 1.46506 * 109.46890 * 305.00352 * 11 9 7 13 13 C 1.36943 * 119.99624 * 179.97438 * 12 11 9 14 14 H 1.07995 * 120.00086 * 0.02562 * 13 12 11 15 15 C 1.38813 * 119.99663 * 179.97438 * 13 12 11 16 16 N 1.31615 * 120.00157 * 359.97438 * 15 13 12 17 17 Si 1.86795 * 119.99774 * 180.02562 * 15 13 12 18 18 H 1.48508 * 109.47386 * 90.00144 * 17 15 13 19 19 H 1.48499 * 109.47027 * 209.99978 * 17 15 13 20 20 H 1.48497 * 109.47355 * 330.00113 * 17 15 13 21 21 C 1.52998 * 109.47194 * 240.00124 * 9 7 5 22 22 C 1.52997 * 117.49694 * 248.74390 * 21 9 7 23 23 C 1.53005 * 117.49737 * 180.08693 * 21 9 7 24 24 H 1.09008 * 109.47105 * 59.99700 * 1 2 3 25 25 H 1.09004 * 109.47431 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47371 * 299.99751 * 1 2 3 27 27 H 1.08998 * 109.46672 * 239.99996 * 2 1 3 28 28 H 1.08998 * 109.47014 * 179.97438 * 3 2 1 29 29 H 1.08996 * 109.47804 * 300.00169 * 3 2 1 30 30 H 1.09006 * 109.47177 * 60.00127 * 3 2 1 31 31 H 1.09005 * 109.47089 * 304.99723 * 4 2 1 32 32 H 1.09002 * 109.46787 * 185.00065 * 4 2 1 33 33 H 1.08996 * 109.47008 * 90.00348 * 8 7 5 34 34 H 1.08997 * 109.46865 * 210.00034 * 8 7 5 35 35 H 1.08998 * 109.47058 * 329.99547 * 8 7 5 36 36 H 1.09006 * 109.46900 * 64.99945 * 11 9 7 37 37 H 1.09004 * 109.47581 * 185.00180 * 11 9 7 38 38 H 0.96995 * 120.00242 * 359.97438 * 12 11 9 39 39 H 0.96995 * 120.00321 * 180.02562 * 16 15 13 40 40 H 1.09002 * 115.55183 * 34.41659 * 21 9 7 41 41 H 1.08997 * 117.50093 * 0.02562 * 22 21 9 42 42 H 1.09008 * 117.49588 * 145.01798 * 22 21 9 43 43 H 1.08998 * 117.49583 * 214.97651 * 23 21 9 44 44 H 1.08998 * 117.49890 * 359.97273 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 1.6413 -2.1733 1.1887 6 8 1.0156 -2.5913 0.2377 7 7 1.9853 -3.0088 2.1889 8 6 2.7462 -2.5052 3.3350 9 6 1.5972 -4.4203 2.1304 10 1 1.0405 -4.6063 1.2119 11 6 2.8519 -5.2956 2.1531 12 7 3.7492 -4.8909 1.0680 13 6 4.9435 -5.5369 0.8904 14 1 5.2237 -6.3449 1.5499 15 6 5.7935 -5.1539 -0.1381 16 7 5.4513 -4.1702 -0.9428 17 14 7.4223 -6.0355 -0.3808 18 1 7.2307 -7.1850 -1.3014 19 1 8.4125 -5.0946 -0.9634 20 1 7.9187 -6.5280 0.9292 21 6 0.7180 -4.7579 3.3362 22 6 1.3042 -5.6889 4.3993 23 6 0.2082 -6.1953 3.4584 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 3.1300 1.4424 0.0005 29 1 1.6767 1.9564 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6053 -0.2618 2.1370 32 1 3.1263 -0.6444 1.2951 33 1 2.0569 -2.1599 4.1054 34 1 3.3694 -3.3042 3.7367 35 1 3.3787 -1.6770 3.0155 36 1 3.3611 -5.1759 3.1094 37 1 2.5689 -6.3398 2.0203 38 1 3.4973 -4.1655 0.4754 39 1 6.0451 -3.9028 -1.6617 40 1 0.0581 -3.9593 3.6752 41 1 2.3164 -6.0606 4.2400 42 1 1.0297 -5.5030 5.4378 43 1 -0.7870 -6.3423 3.8781 44 1 0.4987 -6.9003 2.6795 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717723466.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:32:04 Heat of formation + Delta-G solvation = -26.066730 kcal Electronic energy + Delta-G solvation = -21834.394483 eV Core-core repulsion = 18786.967648 eV Total energy + Delta-G solvation = -3047.426834 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.27616 -39.19766 -36.58416 -36.25374 -35.71501 -33.11806 -30.39519 -28.56251 -27.93080 -27.56774 -25.91892 -24.07293 -23.11407 -21.94376 -20.53137 -19.81631 -19.05192 -18.05026 -17.56738 -16.89483 -16.54502 -16.12834 -15.80729 -15.13995 -15.08140 -14.85078 -14.69179 -14.50658 -13.92274 -13.74412 -13.25849 -13.09707 -13.06781 -12.99903 -12.89771 -12.76416 -12.67015 -12.31547 -12.24979 -12.00407 -11.96056 -11.77810 -11.70129 -11.54983 -11.32557 -10.99287 -10.89981 -10.49047 -9.48826 -9.01132 -7.94567 -5.24941 1.44301 1.46932 1.55208 1.76110 2.11214 2.53881 2.94737 3.37846 3.62111 3.74252 3.88197 3.98060 4.05715 4.09211 4.15932 4.26969 4.30390 4.42094 4.47566 4.62903 4.64598 4.72494 4.76780 4.78454 4.83918 4.86594 4.90672 5.01714 5.04338 5.05852 5.13220 5.17773 5.24291 5.31080 5.33015 5.45913 5.47760 5.55923 5.72203 6.24781 6.55307 7.30748 7.34067 8.07043 8.31048 9.28318 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.012086 B = 0.007308 C = 0.004994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2316.085358 B = 3830.510820 C = 5604.970535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.085 4.085 3 C -0.138 4.138 4 C -0.124 4.124 5 C 0.504 3.496 6 O -0.584 6.584 7 N -0.598 5.598 8 C 0.081 3.919 9 C 0.168 3.832 10 H 0.063 0.937 11 C 0.146 3.854 12 N -0.740 5.740 13 C -0.245 4.245 14 H 0.077 0.923 15 C -0.076 4.076 16 N -0.968 5.968 17 Si 0.975 3.025 18 H -0.291 1.291 19 H -0.295 1.295 20 H -0.265 1.265 21 C -0.162 4.162 22 C -0.167 4.167 23 C -0.172 4.172 24 H 0.055 0.945 25 H 0.043 0.957 26 H 0.068 0.932 27 H 0.038 0.962 28 H 0.053 0.947 29 H 0.060 0.940 30 H 0.075 0.925 31 H 0.123 0.877 32 H 0.093 0.907 33 H 0.084 0.916 34 H 0.065 0.935 35 H 0.075 0.925 36 H 0.042 0.958 37 H 0.022 0.978 38 H 0.371 0.629 39 H 0.249 0.751 40 H 0.116 0.884 41 H 0.092 0.908 42 H 0.117 0.883 43 H 0.116 0.884 44 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.724 7.583 12.931 17.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.104 4.104 3 C -0.195 4.195 4 C -0.164 4.164 5 C 0.294 3.706 6 O -0.465 6.465 7 N -0.330 5.330 8 C -0.061 4.061 9 C 0.063 3.937 10 H 0.082 0.918 11 C 0.019 3.981 12 N -0.383 5.383 13 C -0.377 4.377 14 H 0.095 0.905 15 C -0.268 4.268 16 N -0.618 5.618 17 Si 0.804 3.196 18 H -0.218 1.218 19 H -0.222 1.222 20 H -0.190 1.190 21 C -0.182 4.182 22 C -0.204 4.204 23 C -0.210 4.210 24 H 0.074 0.926 25 H 0.062 0.938 26 H 0.087 0.913 27 H 0.057 0.943 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.094 0.906 31 H 0.141 0.859 32 H 0.111 0.889 33 H 0.102 0.898 34 H 0.084 0.916 35 H 0.093 0.907 36 H 0.059 0.941 37 H 0.040 0.960 38 H 0.203 0.797 39 H 0.058 0.942 40 H 0.134 0.866 41 H 0.110 0.890 42 H 0.136 0.864 43 H 0.134 0.866 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -9.902 7.241 12.514 17.524 hybrid contribution 0.980 -0.514 -1.043 1.521 sum -8.922 6.727 11.471 16.014 Atomic orbital electron populations 1.21855 0.94556 1.01684 1.01984 1.20859 0.96746 0.96608 0.96175 1.21782 1.00916 0.93896 1.02932 1.21783 1.02995 0.89946 1.01640 1.21362 0.78254 0.89843 0.81107 1.90618 1.42921 1.78846 1.34096 1.47778 1.54754 1.08403 1.22049 1.21872 0.96053 1.00340 0.87815 1.20527 0.94249 0.80889 0.97997 0.91843 1.21255 0.90034 0.95490 0.91362 1.42512 1.19190 1.41437 1.35138 1.19629 0.95178 1.12166 1.10688 0.90475 1.25604 1.02700 1.00047 0.98436 1.69873 1.38748 1.32398 1.20814 0.85119 0.79297 0.77174 0.78017 1.21810 1.22176 1.18972 1.22407 1.02811 0.95026 0.97909 1.23201 0.98588 1.02326 0.96282 1.23039 0.99988 0.95175 1.02767 0.92570 0.93781 0.91279 0.94309 0.92811 0.92050 0.90562 0.85928 0.88879 0.89754 0.91594 0.90659 0.94052 0.96012 0.79727 0.94204 0.86584 0.88997 0.86433 0.86619 0.89965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.83 8.93 71.98 0.64 -3.18 16 2 C -0.08 -2.41 2.57 -10.79 -0.03 -2.44 16 3 C -0.14 -2.91 9.19 71.98 0.66 -2.25 16 4 C -0.12 -3.45 3.73 29.85 0.11 -3.34 16 5 C 0.50 18.58 7.09 87.65 0.62 19.21 16 6 O -0.58 -26.65 13.30 -3.01 -0.04 -26.69 16 7 N -0.60 -20.03 2.24 -822.62 -1.85 -21.87 16 8 C 0.08 2.06 9.61 127.77 1.23 3.29 16 9 C 0.17 6.00 2.59 44.99 0.12 6.11 16 10 H 0.06 2.76 6.90 -2.38 -0.02 2.75 16 11 C 0.15 5.98 4.14 86.38 0.36 6.34 16 12 N -0.74 -39.43 5.43 -343.43 -1.87 -41.30 16 13 C -0.24 -14.03 9.99 84.03 0.84 -13.19 16 14 H 0.08 4.19 7.83 -2.91 -0.02 4.17 16 15 C -0.08 -4.47 5.50 84.86 0.47 -4.00 16 16 N -0.97 -61.65 13.06 21.65 0.28 -61.37 16 17 Si 0.98 47.13 29.55 68.60 2.03 49.16 16 18 H -0.29 -13.97 7.11 99.48 0.71 -13.27 16 19 H -0.30 -14.31 7.11 99.48 0.71 -13.61 16 20 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 21 C -0.16 -4.23 5.48 -10.79 -0.06 -4.29 16 22 C -0.17 -3.67 9.59 30.62 0.29 -3.38 16 23 C -0.17 -3.99 9.94 30.62 0.30 -3.69 16 24 H 0.06 1.37 8.14 -2.38 -0.02 1.35 16 25 H 0.04 1.46 5.96 -2.39 -0.01 1.44 16 26 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 27 H 0.04 1.41 7.95 -2.39 -0.02 1.39 16 28 H 0.05 1.15 8.14 -2.39 -0.02 1.14 16 29 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.08 1.25 8.14 -2.38 -0.02 1.23 16 31 H 0.12 2.45 8.11 -2.38 -0.02 2.43 16 32 H 0.09 2.63 7.40 -2.39 -0.02 2.61 16 33 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.07 1.81 6.53 -2.39 -0.02 1.80 16 35 H 0.07 1.80 6.44 -2.39 -0.02 1.78 16 36 H 0.04 1.60 5.34 -2.38 -0.01 1.58 16 37 H 0.02 0.92 7.44 -2.39 -0.02 0.91 16 38 H 0.37 21.90 7.06 -92.71 -0.65 21.25 16 39 H 0.25 15.40 8.31 -92.71 -0.77 14.63 16 40 H 0.12 2.74 8.14 -2.39 -0.02 2.72 16 41 H 0.09 2.31 5.80 -2.39 -0.01 2.30 16 42 H 0.12 1.95 8.14 -2.38 -0.02 1.93 16 43 H 0.12 2.12 8.14 -2.39 -0.02 2.10 16 44 H 0.08 2.17 7.66 -2.39 -0.02 2.15 16 Total: -1.00 -73.60 345.28 4.43 -69.17 By element: Atomic # 1 Polarization: 37.39 SS G_CDS: 0.32 Total: 37.71 kcal Atomic # 6 Polarization: -10.37 SS G_CDS: 5.56 Total: -4.81 kcal Atomic # 7 Polarization: -121.11 SS G_CDS: -3.43 Total: -124.54 kcal Atomic # 8 Polarization: -26.65 SS G_CDS: -0.04 Total: -26.69 kcal Atomic # 14 Polarization: 47.13 SS G_CDS: 2.03 Total: 49.16 kcal Total: -73.60 4.43 -69.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717723466.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.106 kcal (2) G-P(sol) polarization free energy of solvation -73.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds