Wall clock time and date at job start Mon Mar 30 2020 00:28:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52993 * 109.46952 * 2 1 4 4 C 1.53004 * 109.46924 * 179.97438 * 3 2 1 5 5 C 1.50703 * 109.46958 * 180.02562 * 4 3 2 6 6 O 1.21280 * 120.00183 * 0.02562 * 5 4 3 7 7 N 1.34777 * 119.99894 * 180.02562 * 5 4 3 8 8 C 1.47188 * 125.73634 * 359.85989 * 7 5 4 9 9 C 1.54321 * 107.29437 * 181.03089 * 8 7 5 10 10 C 1.55160 * 102.94157 * 22.28370 * 9 8 7 11 11 H 1.08992 * 111.00327 * 82.57674 * 10 9 8 12 12 C 1.53005 * 111.00109 * 206.42501 * 10 9 8 13 13 H 1.08998 * 109.47009 * 53.17026 * 12 10 9 14 14 C 1.53002 * 109.47137 * 293.17005 * 12 10 9 15 15 N 1.46502 * 109.46917 * 173.17287 * 12 10 9 16 16 C 1.36941 * 119.99779 * 205.00314 * 15 12 10 17 17 H 1.08006 * 120.00013 * 359.97438 * 16 15 12 18 18 C 1.38809 * 119.99784 * 179.97438 * 16 15 12 19 19 N 1.31617 * 119.99964 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 119.99925 * 179.97438 * 18 16 15 21 21 H 1.48494 * 109.46926 * 60.00143 * 20 18 16 22 22 H 1.48496 * 109.47326 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.46846 * 300.00073 * 20 18 16 24 24 C 1.47417 * 125.64972 * 179.97438 * 7 5 4 25 25 H 1.09000 * 109.47063 * 300.00061 * 1 2 3 26 26 H 1.09000 * 109.46602 * 60.00104 * 1 2 3 27 27 H 1.08996 * 109.46717 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47196 * 239.99414 * 2 1 3 29 29 H 1.09000 * 109.46602 * 119.99896 * 2 1 3 30 30 H 1.09010 * 109.47331 * 59.99949 * 3 2 1 31 31 H 1.08999 * 109.47625 * 299.99910 * 3 2 1 32 32 H 1.08999 * 109.47131 * 60.00378 * 4 3 2 33 33 H 1.09000 * 109.47064 * 300.00162 * 4 3 2 34 34 H 1.08995 * 109.79431 * 61.64627 * 8 7 5 35 35 H 1.08997 * 109.94605 * 300.49546 * 8 7 5 36 36 H 1.08997 * 110.71922 * 263.91985 * 9 8 7 37 37 H 1.09000 * 110.72342 * 140.64903 * 9 8 7 38 38 H 1.08995 * 109.46867 * 305.26421 * 14 12 10 39 39 H 1.09002 * 109.46892 * 65.26886 * 14 12 10 40 40 H 1.08997 * 109.46957 * 185.26653 * 14 12 10 41 41 H 0.96997 * 119.99842 * 24.99242 * 15 12 10 42 42 H 0.97003 * 119.99763 * 179.97438 * 19 18 16 43 43 H 1.09002 * 110.37157 * 36.99232 * 24 7 5 44 44 H 1.09007 * 110.36945 * 274.78311 * 24 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4424 0.0006 5 6 4.0724 2.8633 0.0013 6 8 3.2843 3.7851 0.0017 7 7 5.3974 3.1096 0.0014 8 6 6.4609 2.0920 0.0039 9 6 7.8109 2.8394 0.0295 10 6 7.4296 4.2255 0.6134 11 1 7.3815 4.1911 1.7017 12 6 8.4061 5.3058 0.1436 13 1 8.4752 5.2849 -0.9439 14 6 9.7870 5.0426 0.7476 15 7 7.9258 6.6201 0.5774 16 6 8.2958 7.7453 -0.1098 17 1 8.9421 7.6638 -0.9714 18 6 7.8403 8.9905 0.3009 19 7 7.0524 9.0897 1.3504 20 14 8.3457 10.5255 -0.6362 21 1 7.8838 10.4208 -2.0435 22 1 7.7310 11.7184 -0.0004 23 1 9.8246 10.6575 -0.6090 24 6 6.0233 4.4443 0.0015 25 1 -0.3633 0.5138 0.8900 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3632 -1.0277 -0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 3.9338 0.9285 -0.8891 33 1 3.9330 0.9287 0.8908 34 1 6.3913 1.4832 -0.8975 35 1 6.3698 1.4610 0.8879 36 1 8.2135 2.9429 -0.9780 37 1 8.5218 2.3294 0.6795 38 1 9.7015 4.9705 1.8318 39 1 10.1847 4.1082 0.3515 40 1 10.4584 5.8616 0.4897 41 1 7.3456 6.6932 1.3513 42 1 6.7344 9.9600 1.6376 43 1 5.4453 5.1344 0.6163 44 1 6.1073 4.8240 -1.0169 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724519653.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:28:08 Heat of formation + Delta-G solvation = -50.457626 kcal Electronic energy + Delta-G solvation = -20766.756004 eV Core-core repulsion = 17718.271501 eV Total energy + Delta-G solvation = -3048.484503 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.95140 -37.86734 -35.46079 -35.11749 -32.48046 -30.96973 -30.22159 -28.55850 -28.10034 -25.05840 -23.86395 -22.84341 -21.51551 -21.11997 -19.62946 -18.92659 -17.22715 -16.73981 -16.28953 -15.75991 -15.06606 -14.74593 -14.25664 -13.99522 -13.75536 -13.59647 -13.14255 -13.12064 -12.77426 -12.48466 -12.35733 -12.10569 -11.96698 -11.64560 -11.47802 -11.37885 -11.29750 -11.15707 -10.85934 -10.76654 -10.71788 -10.57356 -10.49519 -10.22112 -9.89661 -9.62839 -9.57045 -8.88304 -8.43489 -6.93700 -5.72817 -3.02007 2.80761 3.14917 3.46445 3.50837 3.52036 4.44748 4.61047 4.70703 4.72176 4.76211 4.89923 4.97481 5.10759 5.15902 5.31832 5.34869 5.43911 5.55818 5.58069 5.64259 5.66101 5.69597 5.73716 5.90812 5.91375 5.94444 5.95949 6.07681 6.11325 6.18873 6.22818 6.37553 6.41004 6.44304 6.60801 6.65787 6.86701 7.09170 7.71590 7.72443 8.35274 8.45203 9.56372 10.13363 10.47791 11.49641 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.023674 B = 0.003791 C = 0.003366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.459282 B = 7384.489715 C = 8316.376501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.124 4.124 3 C -0.106 4.106 4 C -0.134 4.134 5 C 0.521 3.479 6 O -0.539 6.539 7 N -0.622 5.622 8 C 0.102 3.898 9 C -0.125 4.125 10 C -0.102 4.102 11 H 0.080 0.920 12 C 0.185 3.815 13 H 0.048 0.952 14 C -0.164 4.164 15 N -0.724 5.724 16 C -0.239 4.239 17 H 0.069 0.931 18 C -0.012 4.012 19 N -0.931 5.931 20 Si 0.905 3.095 21 H -0.286 1.286 22 H -0.292 1.292 23 H -0.287 1.287 24 C 0.119 3.881 25 H 0.055 0.945 26 H 0.054 0.946 27 H 0.052 0.948 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.064 0.936 35 H 0.065 0.935 36 H 0.077 0.923 37 H 0.080 0.920 38 H 0.044 0.956 39 H 0.036 0.964 40 H 0.055 0.945 41 H 0.384 0.616 42 H 0.256 0.744 43 H 0.082 0.918 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.052 -21.268 -2.273 21.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.162 4.162 3 C -0.144 4.144 4 C -0.174 4.174 5 C 0.310 3.690 6 O -0.417 6.417 7 N -0.357 5.357 8 C -0.022 4.022 9 C -0.163 4.163 10 C -0.122 4.122 11 H 0.098 0.902 12 C 0.074 3.926 13 H 0.066 0.934 14 C -0.224 4.224 15 N -0.366 5.366 16 C -0.370 4.370 17 H 0.087 0.913 18 C -0.208 4.208 19 N -0.580 5.580 20 Si 0.737 3.263 21 H -0.213 1.213 22 H -0.217 1.217 23 H -0.214 1.214 24 C -0.002 4.002 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.107 0.893 33 H 0.108 0.892 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.096 0.904 37 H 0.099 0.901 38 H 0.063 0.937 39 H 0.055 0.945 40 H 0.074 0.926 41 H 0.217 0.783 42 H 0.065 0.935 43 H 0.101 0.899 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -4.520 -20.640 -2.392 21.264 hybrid contribution 0.264 0.904 -0.176 0.958 sum -4.256 -19.736 -2.569 20.353 Atomic orbital electron populations 1.21764 0.95765 1.01383 1.02111 1.21543 0.96093 0.96694 1.01832 1.21393 0.92867 0.96422 1.03754 1.21666 0.97859 0.93982 1.03938 1.20377 0.80638 0.91640 0.76363 1.90732 1.54298 1.46720 1.49901 1.48717 1.04919 1.08901 1.73114 1.22060 0.87666 0.91391 1.01033 1.22676 0.95333 0.96027 1.02283 1.22677 0.94633 0.94547 1.00325 0.90207 1.20158 0.90471 0.85115 0.96832 0.93362 1.22442 0.99752 0.99624 1.00588 1.42412 1.58774 1.00169 1.35210 1.19151 1.24397 0.85245 1.08245 0.91299 1.24732 1.00230 0.97570 0.98298 1.69648 1.37993 1.23577 1.26734 0.86296 0.77832 0.83072 0.79145 1.21289 1.21744 1.21358 1.22232 0.92850 0.83397 1.01764 0.92618 0.92650 0.92892 0.92088 0.92065 0.91154 0.91193 0.89278 0.89246 0.91753 0.91711 0.90398 0.90120 0.93663 0.94452 0.92595 0.78269 0.93462 0.89950 0.91192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.91 37.16 0.37 -0.80 16 2 C -0.12 -0.98 5.93 -26.73 -0.16 -1.14 16 3 C -0.11 -1.12 4.50 -26.73 -0.12 -1.24 16 4 C -0.13 -1.39 4.90 -27.88 -0.14 -1.53 16 5 C 0.52 8.04 7.85 -10.98 -0.09 7.95 16 6 O -0.54 -10.82 16.24 5.56 0.09 -10.73 16 7 N -0.62 -9.14 3.33 -170.38 -0.57 -9.71 16 8 C 0.10 1.07 6.50 -2.98 -0.02 1.06 16 9 C -0.12 -1.41 5.71 -24.90 -0.14 -1.55 16 10 C -0.10 -1.59 2.62 -88.46 -0.23 -1.82 16 11 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 12 C 0.18 3.48 2.41 -67.93 -0.16 3.31 16 13 H 0.05 0.93 8.04 -51.93 -0.42 0.52 16 14 C -0.16 -2.79 9.27 37.16 0.34 -2.45 16 15 N -0.72 -17.78 4.80 -53.42 -0.26 -18.03 16 16 C -0.24 -6.58 9.93 -15.06 -0.15 -6.73 16 17 H 0.07 1.84 7.83 -52.48 -0.41 1.43 16 18 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 19 N -0.93 -28.45 13.06 55.49 0.72 -27.73 16 20 Si 0.91 22.63 29.55 -169.99 -5.02 17.60 16 21 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 22 H -0.29 -7.38 7.11 56.52 0.40 -6.97 16 23 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 24 C 0.12 2.10 6.07 -2.52 -0.02 2.09 16 25 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.83 8.10 -51.92 -0.42 0.41 16 31 H 0.07 0.82 8.10 -51.93 -0.42 0.40 16 32 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.08 0.86 8.01 -51.93 -0.42 0.44 16 37 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 39 H 0.04 0.51 7.69 -51.93 -0.40 0.11 16 40 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 41 H 0.38 10.17 7.80 -40.82 -0.32 9.85 16 42 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 43 H 0.08 1.73 8.04 -51.93 -0.42 1.31 16 44 H 0.07 1.33 8.04 -51.93 -0.42 0.91 16 LS Contribution 355.20 15.07 5.35 5.35 Total: -1.00 -32.47 355.20 -8.56 -41.03 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: -8.27 Total: 5.51 kcal Atomic # 6 Polarization: -2.69 SS G_CDS: -0.61 Total: -3.30 kcal Atomic # 7 Polarization: -55.37 SS G_CDS: -0.10 Total: -55.47 kcal Atomic # 8 Polarization: -10.82 SS G_CDS: 0.09 Total: -10.73 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -5.02 Total: 17.60 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -32.47 -8.56 -41.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724519653.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.427 kcal (2) G-P(sol) polarization free energy of solvation -32.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds