Wall clock time and date at job start Mon Mar 30 2020 00:28:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52993 * 109.46952 * 2 1 4 4 C 1.53004 * 109.46924 * 179.97438 * 3 2 1 5 5 C 1.50703 * 109.46958 * 180.02562 * 4 3 2 6 6 O 1.21280 * 120.00183 * 0.02562 * 5 4 3 7 7 N 1.34777 * 119.99894 * 180.02562 * 5 4 3 8 8 C 1.47188 * 125.73634 * 359.85989 * 7 5 4 9 9 C 1.54321 * 107.29437 * 181.03089 * 8 7 5 10 10 C 1.55160 * 102.94157 * 22.28370 * 9 8 7 11 11 H 1.08992 * 111.00327 * 82.57674 * 10 9 8 12 12 C 1.53005 * 111.00109 * 206.42501 * 10 9 8 13 13 H 1.08998 * 109.47009 * 53.17026 * 12 10 9 14 14 C 1.53002 * 109.47137 * 293.17005 * 12 10 9 15 15 N 1.46502 * 109.46917 * 173.17287 * 12 10 9 16 16 C 1.36941 * 119.99779 * 205.00314 * 15 12 10 17 17 H 1.08006 * 120.00013 * 359.97438 * 16 15 12 18 18 C 1.38809 * 119.99784 * 179.97438 * 16 15 12 19 19 N 1.31617 * 119.99964 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 119.99925 * 179.97438 * 18 16 15 21 21 H 1.48494 * 109.46926 * 60.00143 * 20 18 16 22 22 H 1.48496 * 109.47326 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.46846 * 300.00073 * 20 18 16 24 24 C 1.47417 * 125.64972 * 179.97438 * 7 5 4 25 25 H 1.09000 * 109.47063 * 300.00061 * 1 2 3 26 26 H 1.09000 * 109.46602 * 60.00104 * 1 2 3 27 27 H 1.08996 * 109.46717 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47196 * 239.99414 * 2 1 3 29 29 H 1.09000 * 109.46602 * 119.99896 * 2 1 3 30 30 H 1.09010 * 109.47331 * 59.99949 * 3 2 1 31 31 H 1.08999 * 109.47625 * 299.99910 * 3 2 1 32 32 H 1.08999 * 109.47131 * 60.00378 * 4 3 2 33 33 H 1.09000 * 109.47064 * 300.00162 * 4 3 2 34 34 H 1.08995 * 109.79431 * 61.64627 * 8 7 5 35 35 H 1.08997 * 109.94605 * 300.49546 * 8 7 5 36 36 H 1.08997 * 110.71922 * 263.91985 * 9 8 7 37 37 H 1.09000 * 110.72342 * 140.64903 * 9 8 7 38 38 H 1.08995 * 109.46867 * 305.26421 * 14 12 10 39 39 H 1.09002 * 109.46892 * 65.26886 * 14 12 10 40 40 H 1.08997 * 109.46957 * 185.26653 * 14 12 10 41 41 H 0.96997 * 119.99842 * 24.99242 * 15 12 10 42 42 H 0.97003 * 119.99763 * 179.97438 * 19 18 16 43 43 H 1.09002 * 110.37157 * 36.99232 * 24 7 5 44 44 H 1.09007 * 110.36945 * 274.78311 * 24 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4424 0.0006 5 6 4.0724 2.8633 0.0013 6 8 3.2843 3.7851 0.0017 7 7 5.3974 3.1096 0.0014 8 6 6.4609 2.0920 0.0039 9 6 7.8109 2.8394 0.0295 10 6 7.4296 4.2255 0.6134 11 1 7.3815 4.1911 1.7017 12 6 8.4061 5.3058 0.1436 13 1 8.4752 5.2849 -0.9439 14 6 9.7870 5.0426 0.7476 15 7 7.9258 6.6201 0.5774 16 6 8.2958 7.7453 -0.1098 17 1 8.9421 7.6638 -0.9714 18 6 7.8403 8.9905 0.3009 19 7 7.0524 9.0897 1.3504 20 14 8.3457 10.5255 -0.6362 21 1 7.8838 10.4208 -2.0435 22 1 7.7310 11.7184 -0.0004 23 1 9.8246 10.6575 -0.6090 24 6 6.0233 4.4443 0.0015 25 1 -0.3633 0.5138 0.8900 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3632 -1.0277 -0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 3.9338 0.9285 -0.8891 33 1 3.9330 0.9287 0.8908 34 1 6.3913 1.4832 -0.8975 35 1 6.3698 1.4610 0.8879 36 1 8.2135 2.9429 -0.9780 37 1 8.5218 2.3294 0.6795 38 1 9.7015 4.9705 1.8318 39 1 10.1847 4.1082 0.3515 40 1 10.4584 5.8616 0.4897 41 1 7.3456 6.6932 1.3513 42 1 6.7344 9.9600 1.6376 43 1 5.4453 5.1344 0.6163 44 1 6.1073 4.8240 -1.0169 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724519653.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:28:08 Heat of formation + Delta-G solvation = -71.307962 kcal Electronic energy + Delta-G solvation = -20767.660143 eV Core-core repulsion = 17718.271501 eV Total energy + Delta-G solvation = -3049.388641 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.14975 -39.15756 -36.78934 -36.21529 -34.29074 -32.26206 -31.29786 -29.99537 -29.48696 -26.15163 -25.70215 -23.86353 -22.83718 -21.89980 -21.07618 -20.07200 -19.11396 -17.99031 -17.46220 -16.88876 -16.49569 -16.06331 -15.59714 -15.42642 -15.12380 -14.56293 -14.47738 -14.27688 -13.96082 -13.69281 -13.60270 -13.32047 -13.17572 -13.07424 -12.82662 -12.66582 -12.36529 -12.26678 -12.21053 -12.10056 -12.01950 -11.85636 -11.67417 -11.52552 -11.44158 -11.37020 -10.94998 -10.84529 -9.64668 -8.99402 -7.93012 -5.20738 1.44860 1.48202 1.53925 1.63243 2.02274 2.56068 3.39167 3.44839 3.68790 3.81042 3.87704 3.93209 4.05301 4.17918 4.34990 4.36967 4.44864 4.48577 4.57199 4.61447 4.65359 4.72205 4.78808 4.88687 4.91579 4.92256 5.01701 5.03202 5.10835 5.10879 5.15973 5.25450 5.29843 5.38157 5.39504 5.42313 5.51099 5.52520 5.66205 6.29124 6.59014 7.17319 7.34564 8.13017 8.33765 9.30607 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.023674 B = 0.003791 C = 0.003366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.459282 B = 7384.489715 C = 8316.376501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.116 4.116 3 C -0.107 4.107 4 C -0.120 4.120 5 C 0.508 3.492 6 O -0.603 6.603 7 N -0.622 5.622 8 C 0.097 3.903 9 C -0.113 4.113 10 C -0.093 4.093 11 H 0.075 0.925 12 C 0.178 3.822 13 H 0.045 0.955 14 C -0.152 4.152 15 N -0.739 5.739 16 C -0.233 4.233 17 H 0.077 0.923 18 C -0.081 4.081 19 N -0.973 5.973 20 Si 0.969 3.031 21 H -0.280 1.280 22 H -0.299 1.299 23 H -0.275 1.275 24 C 0.123 3.877 25 H 0.047 0.953 26 H 0.047 0.953 27 H 0.068 0.932 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.046 0.954 31 H 0.048 0.952 32 H 0.121 0.879 33 H 0.119 0.881 34 H 0.097 0.903 35 H 0.095 0.905 36 H 0.086 0.914 37 H 0.113 0.887 38 H 0.043 0.957 39 H 0.081 0.919 40 H 0.032 0.968 41 H 0.369 0.631 42 H 0.248 0.752 43 H 0.031 0.969 44 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.320 -25.026 -3.125 25.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.153 4.153 3 C -0.145 4.145 4 C -0.159 4.159 5 C 0.300 3.700 6 O -0.484 6.484 7 N -0.355 5.355 8 C -0.024 4.024 9 C -0.151 4.151 10 C -0.113 4.113 11 H 0.093 0.907 12 C 0.069 3.931 13 H 0.063 0.937 14 C -0.212 4.212 15 N -0.379 5.379 16 C -0.365 4.365 17 H 0.095 0.905 18 C -0.273 4.273 19 N -0.624 5.624 20 Si 0.799 3.201 21 H -0.207 1.207 22 H -0.226 1.226 23 H -0.201 1.201 24 C 0.000 4.000 25 H 0.066 0.934 26 H 0.067 0.933 27 H 0.087 0.913 28 H 0.095 0.905 29 H 0.094 0.906 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.139 0.861 33 H 0.137 0.863 34 H 0.115 0.885 35 H 0.113 0.887 36 H 0.105 0.895 37 H 0.131 0.869 38 H 0.062 0.938 39 H 0.100 0.900 40 H 0.051 0.949 41 H 0.200 0.800 42 H 0.057 0.943 43 H 0.050 0.950 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -2.723 -24.482 -3.276 24.850 hybrid contribution -0.272 2.010 0.056 2.029 sum -2.994 -22.472 -3.220 22.898 Atomic orbital electron populations 1.21800 0.95969 1.02171 1.01449 1.21501 0.95924 0.94605 1.03305 1.21378 0.93419 0.98031 1.01646 1.21710 0.97222 0.90304 1.06698 1.21487 0.80304 0.93329 0.74928 1.90703 1.55942 1.49050 1.52710 1.48856 1.05811 1.08533 1.72313 1.22419 0.85362 0.90495 1.04094 1.22725 0.96657 0.92673 1.03068 1.22496 0.92331 0.96485 0.99969 0.90677 1.20449 0.92355 0.83517 0.96742 0.93691 1.22265 0.97521 1.00927 1.00472 1.42667 1.58722 1.01910 1.34581 1.19572 1.22813 0.86279 1.07796 0.90542 1.25545 1.01286 1.00733 0.99688 1.69824 1.40161 1.23547 1.28853 0.85263 0.77849 0.79158 0.77847 1.20655 1.22580 1.20100 1.21913 0.93973 0.84672 0.99477 0.93407 0.93341 0.91309 0.90463 0.90559 0.93500 0.93362 0.86122 0.86277 0.88527 0.88719 0.89520 0.86881 0.93824 0.90006 0.94910 0.79999 0.94305 0.95026 0.93453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.17 9.91 71.98 0.71 -1.46 16 2 C -0.12 -1.53 5.93 30.59 0.18 -1.34 16 3 C -0.11 -2.16 4.50 30.59 0.14 -2.02 16 4 C -0.12 -2.16 4.90 29.85 0.15 -2.01 16 5 C 0.51 15.59 7.85 87.66 0.69 16.28 16 6 O -0.60 -25.70 16.24 -3.03 -0.05 -25.75 16 7 N -0.62 -17.64 3.33 -811.36 -2.70 -20.34 16 8 C 0.10 1.61 6.50 86.70 0.56 2.18 16 9 C -0.11 -2.07 5.71 31.78 0.18 -1.89 16 10 C -0.09 -2.81 2.62 -9.39 -0.02 -2.83 16 11 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 12 C 0.18 6.59 2.41 44.99 0.11 6.70 16 13 H 0.05 1.70 8.04 -2.39 -0.02 1.68 16 14 C -0.15 -4.86 9.27 71.98 0.67 -4.19 16 15 N -0.74 -37.38 4.80 -322.92 -1.55 -38.93 16 16 C -0.23 -13.06 9.93 84.03 0.83 -12.23 16 17 H 0.08 4.09 7.83 -2.91 -0.02 4.07 16 18 C -0.08 -4.77 5.50 84.86 0.47 -4.30 16 19 N -0.97 -61.96 13.06 21.65 0.28 -61.67 16 20 Si 0.97 47.59 29.55 68.60 2.03 49.62 16 21 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 22 H -0.30 -14.95 7.11 99.48 0.71 -14.24 16 23 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 24 C 0.12 4.51 6.07 86.86 0.53 5.04 16 25 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 26 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 27 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.05 1.15 8.10 -2.38 -0.02 1.13 16 31 H 0.05 1.16 8.10 -2.39 -0.02 1.14 16 32 H 0.12 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.12 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.09 1.49 8.01 -2.39 -0.02 1.47 16 37 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.08 1.89 7.69 -2.39 -0.02 1.87 16 40 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 41 H 0.37 20.58 7.80 -92.71 -0.72 19.86 16 42 H 0.25 15.47 8.31 -92.71 -0.77 14.70 16 43 H 0.03 1.45 8.04 -2.39 -0.02 1.43 16 44 H 0.05 1.90 8.04 -2.38 -0.02 1.89 16 Total: -1.00 -77.22 355.20 3.41 -73.81 By element: Atomic # 1 Polarization: 25.13 SS G_CDS: 0.22 Total: 25.35 kcal Atomic # 6 Polarization: -7.27 SS G_CDS: 5.19 Total: -2.08 kcal Atomic # 7 Polarization: -116.98 SS G_CDS: -3.97 Total: -120.95 kcal Atomic # 8 Polarization: -25.70 SS G_CDS: -0.05 Total: -25.75 kcal Atomic # 14 Polarization: 47.59 SS G_CDS: 2.03 Total: 49.62 kcal Total: -77.22 3.41 -73.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724519653.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.499 kcal (2) G-P(sol) polarization free energy of solvation -77.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds