Wall clock time and date at job start Mon Mar 30 2020 00:28:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47021 * 2 1 4 4 C 1.53009 * 109.46942 * 179.97438 * 3 2 1 5 5 C 1.50697 * 109.46866 * 180.02562 * 4 3 2 6 6 O 1.21278 * 120.00387 * 359.97438 * 5 4 3 7 7 N 1.34779 * 120.00001 * 179.97438 * 5 4 3 8 8 C 1.47028 * 125.64795 * 359.95901 * 7 5 4 9 9 C 1.54365 * 107.29249 * 181.12907 * 8 7 5 10 10 C 1.55158 * 102.92041 * 22.13366 * 9 8 7 11 11 H 1.09002 * 111.00167 * 82.64099 * 10 9 8 12 12 C 1.52997 * 111.00710 * 206.45596 * 10 9 8 13 13 H 1.09002 * 109.47153 * 55.41879 * 12 10 9 14 14 C 1.53000 * 109.47060 * 175.42198 * 12 10 9 15 15 N 1.46500 * 109.47007 * 295.41968 * 12 10 9 16 16 C 1.36931 * 119.99971 * 154.99885 * 15 12 10 17 17 H 1.08005 * 120.00425 * 359.97438 * 16 15 12 18 18 C 1.38812 * 120.00390 * 180.02562 * 16 15 12 19 19 N 1.31624 * 119.99556 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00553 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47196 * 60.00050 * 20 18 16 22 22 H 1.48500 * 109.47547 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.46942 * 299.99859 * 20 18 16 24 24 C 1.47425 * 125.65154 * 179.97438 * 7 5 4 25 25 H 1.08997 * 109.47322 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46990 * 300.00199 * 1 2 3 27 27 H 1.09000 * 109.47146 * 59.99978 * 1 2 3 28 28 H 1.09000 * 109.47182 * 240.00271 * 2 1 3 29 29 H 1.09000 * 109.47146 * 120.00022 * 2 1 3 30 30 H 1.09004 * 109.47401 * 60.00052 * 3 2 1 31 31 H 1.09000 * 109.47813 * 299.99592 * 3 2 1 32 32 H 1.08996 * 109.46746 * 60.00408 * 4 3 2 33 33 H 1.08996 * 109.46731 * 299.99906 * 4 3 2 34 34 H 1.09001 * 109.88041 * 300.51376 * 8 7 5 35 35 H 1.09000 * 109.88181 * 61.67050 * 8 7 5 36 36 H 1.08997 * 110.70368 * 263.79611 * 9 8 7 37 37 H 1.08993 * 110.75730 * 140.50321 * 9 8 7 38 38 H 1.08992 * 109.47399 * 59.99823 * 14 12 10 39 39 H 1.09004 * 109.46724 * 180.02562 * 14 12 10 40 40 H 1.09001 * 109.47194 * 299.99650 * 14 12 10 41 41 H 0.97004 * 120.00223 * 334.99863 * 15 12 10 42 42 H 0.96997 * 119.99679 * 179.97438 * 19 18 16 43 43 H 1.08995 * 110.36760 * 36.99617 * 24 7 5 44 44 H 1.08999 * 110.45924 * 274.72176 * 24 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.0723 2.8632 0.0013 6 8 3.2843 3.7851 0.0008 7 7 5.3974 3.1096 0.0024 8 6 6.4582 2.0915 0.0040 9 6 7.8096 2.8370 0.0340 10 6 7.4282 4.2233 0.6172 11 1 7.3778 4.1888 1.7055 12 6 8.4068 5.3028 0.1505 13 1 8.4486 5.3089 -0.9387 14 6 7.9349 6.6696 0.6505 15 7 9.7395 5.0194 0.6887 16 6 10.8523 5.4923 0.0459 17 1 10.7475 6.0739 -0.8581 18 6 12.1151 5.2234 0.5555 19 7 12.2429 4.5143 1.6570 20 14 13.6331 5.8691 -0.3209 21 1 13.5780 7.3520 -0.3789 22 1 14.8493 5.4471 0.4193 23 1 13.6788 5.3211 -1.7004 24 6 6.0233 4.4444 0.0026 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.6767 1.9564 -0.8900 32 1 3.9337 0.9285 -0.8891 33 1 3.9329 0.9288 0.8909 34 1 6.3644 1.4598 0.8874 35 1 6.3897 1.4834 -0.8980 36 1 8.2150 2.9405 -0.9725 37 1 8.5182 2.3261 0.6857 38 1 7.8931 6.6635 1.7396 39 1 8.6319 7.4387 0.3175 40 1 6.9433 6.8805 0.2500 41 1 9.8338 4.4968 1.5005 42 1 13.1254 4.3261 2.0129 43 1 5.4448 5.1345 0.6168 44 1 6.1098 4.8247 -1.0152 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724519656.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:28:13 Heat of formation + Delta-G solvation = -69.632349 kcal Electronic energy + Delta-G solvation = -20633.011881 eV Core-core repulsion = 17583.695899 eV Total energy + Delta-G solvation = -3049.315981 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.17025 -39.15425 -36.79398 -36.19702 -34.25060 -32.21808 -31.15355 -30.74900 -28.79729 -26.46999 -25.57011 -23.88742 -22.77963 -21.90451 -21.07860 -20.06162 -19.13208 -18.00676 -17.53598 -16.91008 -16.39464 -16.05644 -15.61144 -15.36253 -14.91565 -14.68217 -14.48193 -14.10419 -13.98413 -13.88853 -13.65584 -13.38657 -13.17754 -13.12195 -12.86862 -12.75155 -12.31667 -12.22406 -12.19674 -12.06975 -11.97084 -11.83846 -11.65084 -11.54138 -11.42884 -11.37148 -10.92882 -10.84587 -9.65633 -8.97050 -7.90178 -5.17198 1.49580 1.51214 1.57098 1.62727 2.00452 2.58906 3.39056 3.44618 3.69792 3.75517 3.86592 3.95313 4.06708 4.22879 4.32670 4.36410 4.39893 4.48005 4.52805 4.60797 4.64347 4.68061 4.75500 4.81419 4.89998 4.94513 4.99860 5.02108 5.06445 5.12302 5.18918 5.22748 5.30242 5.36296 5.38663 5.40611 5.52014 5.55402 5.60280 6.31952 6.55120 7.14483 7.38952 8.14662 8.38741 9.32917 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.045308 B = 0.003141 C = 0.003017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.842203 B = 8911.996697 C = 9278.120341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.120 4.120 3 C -0.103 4.103 4 C -0.128 4.128 5 C 0.518 3.482 6 O -0.592 6.592 7 N -0.620 5.620 8 C 0.105 3.895 9 C -0.114 4.114 10 C -0.094 4.094 11 H 0.074 0.926 12 C 0.182 3.818 13 H 0.046 0.954 14 C -0.160 4.160 15 N -0.730 5.730 16 C -0.233 4.233 17 H 0.072 0.928 18 C -0.074 4.074 19 N -0.968 5.968 20 Si 0.966 3.034 21 H -0.283 1.283 22 H -0.298 1.298 23 H -0.278 1.278 24 C 0.118 3.882 25 H 0.064 0.936 26 H 0.049 0.951 27 H 0.050 0.950 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.051 0.949 31 H 0.053 0.947 32 H 0.115 0.885 33 H 0.113 0.887 34 H 0.088 0.912 35 H 0.092 0.908 36 H 0.070 0.930 37 H 0.077 0.923 38 H 0.041 0.959 39 H 0.036 0.964 40 H 0.064 0.936 41 H 0.373 0.627 42 H 0.249 0.751 43 H 0.066 0.934 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.574 -10.638 -3.981 21.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.157 4.157 3 C -0.141 4.141 4 C -0.167 4.167 5 C 0.309 3.691 6 O -0.473 6.473 7 N -0.353 5.353 8 C -0.017 4.017 9 C -0.152 4.152 10 C -0.114 4.114 11 H 0.093 0.907 12 C 0.074 3.926 13 H 0.064 0.936 14 C -0.220 4.220 15 N -0.370 5.370 16 C -0.365 4.365 17 H 0.090 0.910 18 C -0.266 4.266 19 N -0.619 5.619 20 Si 0.796 3.204 21 H -0.209 1.209 22 H -0.224 1.224 23 H -0.204 1.204 24 C -0.005 4.005 25 H 0.083 0.917 26 H 0.068 0.932 27 H 0.069 0.931 28 H 0.092 0.908 29 H 0.090 0.910 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.133 0.867 33 H 0.131 0.869 34 H 0.106 0.894 35 H 0.110 0.890 36 H 0.088 0.912 37 H 0.095 0.905 38 H 0.060 0.940 39 H 0.055 0.945 40 H 0.083 0.917 41 H 0.205 0.795 42 H 0.058 0.942 43 H 0.084 0.916 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -18.961 -10.105 -4.126 21.878 hybrid contribution 1.285 0.653 0.131 1.448 sum -17.676 -9.453 -3.994 20.438 Atomic orbital electron populations 1.21785 0.95758 1.02091 1.01619 1.21519 0.96093 0.95066 1.03034 1.21348 0.92990 0.97736 1.02001 1.21736 0.97560 0.91073 1.06357 1.21202 0.80009 0.93074 0.74813 1.90669 1.55476 1.48515 1.52679 1.48733 1.05560 1.08567 1.72444 1.22242 0.85224 0.90643 1.03599 1.22513 0.96008 0.94743 1.01953 1.22447 0.93075 0.95810 1.00038 0.90718 1.20293 0.83991 0.92080 0.96264 0.93566 1.22367 1.00043 0.98945 1.00624 1.42498 1.00494 1.63856 1.30148 1.19515 0.85929 1.25501 1.05509 0.90968 1.25440 1.00158 1.02119 0.98899 1.69792 1.22521 1.45628 1.23945 0.85320 0.79370 0.77915 0.77807 1.20920 1.22425 1.20432 1.22116 0.92373 0.85256 1.00747 0.91653 0.93164 0.93090 0.90833 0.90950 0.92993 0.92845 0.86656 0.86867 0.89396 0.88969 0.91155 0.90455 0.93986 0.94455 0.91695 0.79453 0.94186 0.91554 0.91351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.89 9.91 71.98 0.71 -1.17 16 2 C -0.12 -1.44 5.93 30.59 0.18 -1.26 16 3 C -0.10 -1.78 4.50 30.60 0.14 -1.64 16 4 C -0.13 -2.07 4.89 29.85 0.15 -1.93 16 5 C 0.52 13.38 7.85 87.66 0.69 14.07 16 6 O -0.59 -20.40 16.24 -3.02 -0.05 -20.45 16 7 N -0.62 -15.41 3.33 -811.66 -2.70 -18.11 16 8 C 0.10 2.08 6.49 86.74 0.56 2.64 16 9 C -0.11 -3.08 6.21 31.80 0.20 -2.88 16 10 C -0.09 -2.84 2.64 -9.39 -0.02 -2.87 16 11 H 0.07 2.37 8.14 -2.39 -0.02 2.36 16 12 C 0.18 6.79 2.40 44.99 0.11 6.90 16 13 H 0.05 1.75 8.07 -2.39 -0.02 1.74 16 14 C -0.16 -5.63 9.31 71.98 0.67 -4.96 16 15 N -0.73 -34.78 4.90 -322.94 -1.58 -36.37 16 16 C -0.23 -12.44 9.93 84.03 0.83 -11.61 16 17 H 0.07 3.75 7.83 -2.91 -0.02 3.72 16 18 C -0.07 -4.13 5.50 84.86 0.47 -3.66 16 19 N -0.97 -57.64 13.06 21.65 0.28 -57.35 16 20 Si 0.97 45.35 29.55 68.60 2.03 47.38 16 21 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 22 H -0.30 -14.18 7.11 99.48 0.71 -13.47 16 23 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 24 C 0.12 3.33 5.42 86.86 0.47 3.80 16 25 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 26 H 0.05 0.65 8.14 -2.38 -0.02 0.63 16 27 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 28 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.05 1.07 8.10 -2.38 -0.02 1.05 16 31 H 0.05 1.08 8.10 -2.39 -0.02 1.06 16 32 H 0.12 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.07 2.02 8.03 -2.39 -0.02 2.00 16 37 H 0.08 2.25 8.14 -2.39 -0.02 2.24 16 38 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 39 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 40 H 0.06 1.92 7.33 -2.39 -0.02 1.90 16 41 H 0.37 19.14 7.80 -92.71 -0.72 18.42 16 42 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 43 H 0.07 1.99 7.94 -2.39 -0.02 1.97 16 44 H 0.07 1.91 8.03 -2.39 -0.02 1.90 16 Total: -1.00 -66.54 354.77 3.35 -63.19 By element: Atomic # 1 Polarization: 26.07 SS G_CDS: 0.22 Total: 26.29 kcal Atomic # 6 Polarization: -9.73 SS G_CDS: 5.15 Total: -4.58 kcal Atomic # 7 Polarization: -107.83 SS G_CDS: -4.00 Total: -111.83 kcal Atomic # 8 Polarization: -20.40 SS G_CDS: -0.05 Total: -20.45 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.38 kcal Total: -66.54 3.35 -63.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724519656.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.446 kcal (2) G-P(sol) polarization free energy of solvation -66.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds