Wall clock time and date at job start Mon Mar 30 2020 00:29:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47166 * 2 1 4 4 C 1.53006 * 109.47043 * 179.97438 * 3 2 1 5 5 C 1.50701 * 109.47228 * 179.97438 * 4 3 2 6 6 O 1.21281 * 119.99884 * 0.02562 * 5 4 3 7 7 N 1.34769 * 119.99961 * 180.02562 * 5 4 3 8 8 C 1.48143 * 127.84170 * 359.97438 * 7 5 4 9 9 C 1.54384 * 104.62065 * 140.39360 * 8 7 5 10 10 H 1.09003 * 110.34272 * 264.99644 * 9 8 7 11 11 C 1.53004 * 110.34283 * 142.73967 * 9 8 7 12 12 C 1.54281 * 104.95995 * 23.86782 * 9 8 7 13 13 H 1.09005 * 110.34282 * 241.02108 * 12 9 8 14 14 C 1.53004 * 110.34432 * 118.87059 * 12 9 8 15 15 N 1.46499 * 109.47198 * 175.00023 * 14 12 9 16 16 C 1.36939 * 119.99933 * 180.27608 * 15 14 12 17 17 H 1.08001 * 119.99700 * 359.72658 * 16 15 14 18 18 C 1.38810 * 120.00095 * 179.71972 * 16 15 14 19 19 N 1.31624 * 119.99740 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00044 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47173 * 60.00435 * 20 18 16 22 22 H 1.48497 * 109.47172 * 180.02562 * 20 18 16 23 23 H 1.48506 * 109.47132 * 300.00314 * 20 18 16 24 24 C 1.48151 * 127.83789 * 179.97438 * 7 5 4 25 25 H 1.08999 * 109.47228 * 300.00358 * 1 2 3 26 26 H 1.09007 * 109.46814 * 60.00241 * 1 2 3 27 27 H 1.08991 * 109.47272 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47228 * 239.99642 * 2 1 3 29 29 H 1.09007 * 109.46814 * 119.99759 * 2 1 3 30 30 H 1.08999 * 109.47340 * 59.99710 * 3 2 1 31 31 H 1.08999 * 109.47177 * 299.99267 * 3 2 1 32 32 H 1.08999 * 109.46870 * 59.99936 * 4 3 2 33 33 H 1.08993 * 109.47288 * 300.00181 * 4 3 2 34 34 H 1.09008 * 110.40586 * 21.60860 * 8 7 5 35 35 H 1.09001 * 110.40981 * 259.18201 * 8 7 5 36 36 H 1.09002 * 109.46810 * 304.46041 * 11 9 8 37 37 H 1.09001 * 109.46892 * 64.46206 * 11 9 8 38 38 H 1.09001 * 109.47136 * 184.46314 * 11 9 8 39 39 H 1.09009 * 109.46730 * 54.99810 * 14 12 9 40 40 H 1.08998 * 109.46846 * 295.00355 * 14 12 9 41 41 H 0.97001 * 119.99790 * 359.97438 * 15 14 12 42 42 H 0.96998 * 119.99409 * 179.97438 * 19 18 16 43 43 H 1.08998 * 110.40618 * 100.82194 * 24 7 5 44 44 H 1.08998 * 110.40357 * 338.39260 * 24 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4424 0.0006 5 6 4.0725 2.8632 0.0000 6 8 3.2844 3.7851 -0.0004 7 7 5.3975 3.1094 -0.0001 8 6 6.5047 2.1253 0.0009 9 6 7.5607 2.7258 -0.9519 10 1 7.4417 2.3171 -1.9554 11 6 8.9706 2.4473 -0.4268 12 6 7.2788 4.2426 -0.9537 13 1 7.0232 4.5794 -1.9584 14 6 8.4943 5.0101 -0.4297 15 7 8.2522 6.4499 -0.5508 16 6 9.2098 7.3416 -0.1472 17 1 10.1419 6.9835 0.2645 18 6 8.9828 8.7057 -0.2674 19 7 7.8467 9.1421 -0.7688 20 14 10.2889 9.9221 0.2838 21 1 11.5347 9.6961 -0.4921 22 1 9.8051 11.3068 0.0519 23 1 10.5649 9.7304 1.7303 24 6 6.0772 4.4258 -0.0012 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0276 0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 1.6767 1.9564 0.8899 31 1 1.6768 1.9563 -0.8900 32 1 3.9337 0.9285 -0.8891 33 1 3.9330 0.9287 0.8908 34 1 6.1578 1.1625 -0.3746 35 1 6.9162 2.0169 1.0044 36 1 9.0606 2.8268 0.5911 37 1 9.1544 1.3729 -0.4316 38 1 9.7009 2.9439 -1.0656 39 1 9.3743 4.7392 -1.0133 40 1 8.6605 4.7564 0.6173 41 1 7.4152 6.7714 -0.9210 42 1 7.6879 10.0953 -0.8525 43 1 6.4220 4.6764 1.0020 44 1 5.4077 5.1989 -0.3782 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724568472.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:29:07 Heat of formation + Delta-G solvation = -44.975388 kcal Electronic energy + Delta-G solvation = -20733.039379 eV Core-core repulsion = 17684.792603 eV Total energy + Delta-G solvation = -3048.246775 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.08190 -38.15154 -35.47395 -34.61936 -32.89862 -31.18769 -30.78444 -28.89817 -26.64174 -25.47860 -24.32974 -22.97346 -22.02339 -21.23533 -19.11040 -18.82777 -17.18933 -16.73258 -16.23541 -15.64258 -15.37723 -14.89474 -14.57021 -13.94962 -13.89428 -13.67107 -13.54037 -13.10677 -12.71380 -12.57515 -12.39592 -12.08805 -11.91421 -11.84830 -11.70743 -11.49623 -11.39202 -11.18651 -10.95856 -10.82706 -10.77716 -10.48619 -10.40845 -10.19237 -9.93245 -9.70167 -9.63313 -8.83915 -8.59134 -6.89674 -5.73563 -3.02840 2.74171 3.05264 3.45576 3.49687 3.51258 4.40399 4.59368 4.64730 4.66999 4.72844 4.84216 4.90527 5.07180 5.10624 5.28187 5.31818 5.41759 5.46641 5.52786 5.59683 5.60483 5.61052 5.65400 5.70788 5.80553 5.85638 5.91536 5.99163 6.05651 6.10363 6.16664 6.18297 6.22893 6.34904 6.44414 6.55634 6.76300 6.87068 7.70087 7.70945 8.28026 8.44927 9.55736 10.13789 10.47801 11.49107 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.028731 B = 0.003514 C = 0.003192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.317308 B = 7966.035340 C = 8770.984871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.124 4.124 3 C -0.106 4.106 4 C -0.135 4.135 5 C 0.528 3.472 6 O -0.542 6.542 7 N -0.626 5.626 8 C 0.105 3.895 9 C -0.099 4.099 10 H 0.077 0.923 11 C -0.146 4.146 12 C -0.105 4.105 13 H 0.080 0.920 14 C 0.162 3.838 15 N -0.734 5.734 16 C -0.241 4.241 17 H 0.069 0.931 18 C -0.013 4.013 19 N -0.932 5.932 20 Si 0.907 3.093 21 H -0.286 1.286 22 H -0.291 1.291 23 H -0.286 1.286 24 C 0.115 3.885 25 H 0.054 0.946 26 H 0.055 0.945 27 H 0.052 0.948 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.075 0.925 35 H 0.073 0.927 36 H 0.063 0.937 37 H 0.050 0.950 38 H 0.067 0.933 39 H 0.027 0.973 40 H 0.022 0.978 41 H 0.383 0.617 42 H 0.256 0.744 43 H 0.076 0.924 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.868 -21.903 0.954 22.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.162 4.162 3 C -0.144 4.144 4 C -0.175 4.175 5 C 0.317 3.683 6 O -0.419 6.419 7 N -0.360 5.360 8 C -0.018 4.018 9 C -0.119 4.119 10 H 0.096 0.904 11 C -0.203 4.203 12 C -0.125 4.125 13 H 0.098 0.902 14 C 0.035 3.965 15 N -0.379 5.379 16 C -0.372 4.372 17 H 0.087 0.913 18 C -0.210 4.210 19 N -0.581 5.581 20 Si 0.738 3.262 21 H -0.213 1.213 22 H -0.217 1.217 23 H -0.213 1.213 24 C -0.007 4.007 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.071 0.929 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.108 0.892 33 H 0.108 0.892 34 H 0.093 0.907 35 H 0.091 0.909 36 H 0.082 0.918 37 H 0.069 0.931 38 H 0.086 0.914 39 H 0.044 0.956 40 H 0.040 0.960 41 H 0.217 0.783 42 H 0.066 0.934 43 H 0.094 0.906 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -7.281 -21.344 1.029 22.575 hybrid contribution 0.573 0.851 0.141 1.036 sum -6.708 -20.493 1.169 21.595 Atomic orbital electron populations 1.21762 0.95740 1.01415 1.02101 1.21545 0.96113 0.96658 1.01870 1.21392 0.92783 0.96477 1.03745 1.21664 0.97892 0.93897 1.04019 1.20344 0.80279 0.91648 0.76007 1.90724 1.54183 1.46763 1.50219 1.49129 1.04562 1.09423 1.72894 1.22517 0.87030 0.92261 1.00027 1.22059 0.95025 0.95725 0.99055 0.90432 1.21900 0.95562 1.00627 1.02232 1.22339 0.96087 0.94054 1.00022 0.90175 1.20851 0.93418 0.85111 0.97143 1.42419 1.19895 0.99234 1.76303 1.19158 0.96653 0.87226 1.34202 0.91257 1.24754 0.97355 0.96951 1.01901 1.69657 1.23863 1.13634 1.50899 0.86271 0.80906 0.80658 0.78349 1.21299 1.21704 1.21291 1.22433 0.93243 0.84853 1.00187 0.92645 0.92627 0.92867 0.92046 0.92056 0.91180 0.91156 0.89182 0.89196 0.90701 0.90866 0.91764 0.93139 0.91365 0.95579 0.95988 0.78298 0.93428 0.90613 0.89848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.91 37.16 0.37 -0.74 16 2 C -0.12 -0.93 5.93 -26.73 -0.16 -1.09 16 3 C -0.11 -1.06 4.50 -26.73 -0.12 -1.18 16 4 C -0.13 -1.33 4.68 -27.88 -0.13 -1.46 16 5 C 0.53 7.82 7.91 -10.99 -0.09 7.73 16 6 O -0.54 -10.41 16.25 5.56 0.09 -10.32 16 7 N -0.63 -8.91 3.32 -169.29 -0.56 -9.47 16 8 C 0.10 1.11 6.46 -2.41 -0.02 1.10 16 9 C -0.10 -1.16 3.66 -89.22 -0.33 -1.49 16 10 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 11 C -0.15 -1.57 7.94 37.16 0.29 -1.27 16 12 C -0.11 -1.68 3.10 -89.20 -0.28 -1.96 16 13 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 14 C 0.16 3.13 4.40 -4.04 -0.02 3.11 16 15 N -0.73 -18.55 5.48 -59.90 -0.33 -18.88 16 16 C -0.24 -6.76 9.99 -15.06 -0.15 -6.91 16 17 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 18 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 19 N -0.93 -28.68 13.06 55.49 0.72 -27.95 16 20 Si 0.91 22.60 29.55 -169.99 -5.02 17.57 16 21 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 22 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 23 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 24 C 0.11 1.95 6.41 -2.39 -0.02 1.93 16 25 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.79 8.10 -51.93 -0.42 0.37 16 31 H 0.07 0.80 8.10 -51.93 -0.42 0.38 16 32 H 0.09 0.73 7.95 -51.93 -0.41 0.32 16 33 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.07 0.60 7.30 -51.92 -0.38 0.22 16 35 H 0.07 0.73 7.83 -51.93 -0.41 0.32 16 36 H 0.06 0.73 6.90 -51.93 -0.36 0.37 16 37 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 38 H 0.07 0.80 6.67 -51.93 -0.35 0.45 16 39 H 0.03 0.51 6.49 -51.92 -0.34 0.17 16 40 H 0.02 0.43 6.94 -51.93 -0.36 0.07 16 41 H 0.38 10.34 7.61 -40.82 -0.31 10.03 16 42 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 43 H 0.08 1.35 7.75 -51.93 -0.40 0.95 16 44 H 0.08 1.64 7.88 -51.93 -0.41 1.23 16 LS Contribution 348.31 15.07 5.25 5.25 Total: -1.00 -32.94 348.31 -8.49 -41.44 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: -7.91 Total: 5.08 kcal Atomic # 6 Polarization: -1.99 SS G_CDS: -0.73 Total: -2.72 kcal Atomic # 7 Polarization: -56.13 SS G_CDS: -0.16 Total: -56.30 kcal Atomic # 8 Polarization: -10.41 SS G_CDS: 0.09 Total: -10.32 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -5.02 Total: 17.57 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.94 -8.49 -41.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724568472.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.539 kcal (2) G-P(sol) polarization free energy of solvation -32.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds