Wall clock time and date at job start Mon Mar 30 2020 00:29:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47166 * 2 1 4 4 C 1.53006 * 109.47043 * 179.97438 * 3 2 1 5 5 C 1.50701 * 109.47228 * 179.97438 * 4 3 2 6 6 O 1.21281 * 119.99884 * 0.02562 * 5 4 3 7 7 N 1.34769 * 119.99961 * 180.02562 * 5 4 3 8 8 C 1.48143 * 127.84170 * 359.97438 * 7 5 4 9 9 C 1.54384 * 104.62065 * 140.39360 * 8 7 5 10 10 H 1.09003 * 110.34272 * 264.99644 * 9 8 7 11 11 C 1.53004 * 110.34283 * 142.73967 * 9 8 7 12 12 C 1.54281 * 104.95995 * 23.86782 * 9 8 7 13 13 H 1.09005 * 110.34282 * 241.02108 * 12 9 8 14 14 C 1.53004 * 110.34432 * 118.87059 * 12 9 8 15 15 N 1.46499 * 109.47198 * 175.00023 * 14 12 9 16 16 C 1.36939 * 119.99933 * 180.27608 * 15 14 12 17 17 H 1.08001 * 119.99700 * 359.72658 * 16 15 14 18 18 C 1.38810 * 120.00095 * 179.71972 * 16 15 14 19 19 N 1.31624 * 119.99740 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00044 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47173 * 60.00435 * 20 18 16 22 22 H 1.48497 * 109.47172 * 180.02562 * 20 18 16 23 23 H 1.48506 * 109.47132 * 300.00314 * 20 18 16 24 24 C 1.48151 * 127.83789 * 179.97438 * 7 5 4 25 25 H 1.08999 * 109.47228 * 300.00358 * 1 2 3 26 26 H 1.09007 * 109.46814 * 60.00241 * 1 2 3 27 27 H 1.08991 * 109.47272 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47228 * 239.99642 * 2 1 3 29 29 H 1.09007 * 109.46814 * 119.99759 * 2 1 3 30 30 H 1.08999 * 109.47340 * 59.99710 * 3 2 1 31 31 H 1.08999 * 109.47177 * 299.99267 * 3 2 1 32 32 H 1.08999 * 109.46870 * 59.99936 * 4 3 2 33 33 H 1.08993 * 109.47288 * 300.00181 * 4 3 2 34 34 H 1.09008 * 110.40586 * 21.60860 * 8 7 5 35 35 H 1.09001 * 110.40981 * 259.18201 * 8 7 5 36 36 H 1.09002 * 109.46810 * 304.46041 * 11 9 8 37 37 H 1.09001 * 109.46892 * 64.46206 * 11 9 8 38 38 H 1.09001 * 109.47136 * 184.46314 * 11 9 8 39 39 H 1.09009 * 109.46730 * 54.99810 * 14 12 9 40 40 H 1.08998 * 109.46846 * 295.00355 * 14 12 9 41 41 H 0.97001 * 119.99790 * 359.97438 * 15 14 12 42 42 H 0.96998 * 119.99409 * 179.97438 * 19 18 16 43 43 H 1.08998 * 110.40618 * 100.82194 * 24 7 5 44 44 H 1.08998 * 110.40357 * 338.39260 * 24 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4424 0.0006 5 6 4.0725 2.8632 0.0000 6 8 3.2844 3.7851 -0.0004 7 7 5.3975 3.1094 -0.0001 8 6 6.5047 2.1253 0.0009 9 6 7.5607 2.7258 -0.9519 10 1 7.4417 2.3171 -1.9554 11 6 8.9706 2.4473 -0.4268 12 6 7.2788 4.2426 -0.9537 13 1 7.0232 4.5794 -1.9584 14 6 8.4943 5.0101 -0.4297 15 7 8.2522 6.4499 -0.5508 16 6 9.2098 7.3416 -0.1472 17 1 10.1419 6.9835 0.2645 18 6 8.9828 8.7057 -0.2674 19 7 7.8467 9.1421 -0.7688 20 14 10.2889 9.9221 0.2838 21 1 11.5347 9.6961 -0.4921 22 1 9.8051 11.3068 0.0519 23 1 10.5649 9.7304 1.7303 24 6 6.0772 4.4258 -0.0012 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0276 0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 1.6767 1.9564 0.8899 31 1 1.6768 1.9563 -0.8900 32 1 3.9337 0.9285 -0.8891 33 1 3.9330 0.9287 0.8908 34 1 6.1578 1.1625 -0.3746 35 1 6.9162 2.0169 1.0044 36 1 9.0606 2.8268 0.5911 37 1 9.1544 1.3729 -0.4316 38 1 9.7009 2.9439 -1.0656 39 1 9.3743 4.7392 -1.0133 40 1 8.6605 4.7564 0.6173 41 1 7.4152 6.7714 -0.9210 42 1 7.6879 10.0953 -0.8525 43 1 6.4220 4.6764 1.0020 44 1 5.4077 5.1989 -0.3782 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724568472.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:29:07 Heat of formation + Delta-G solvation = -66.234901 kcal Electronic energy + Delta-G solvation = -20733.961260 eV Core-core repulsion = 17684.792603 eV Total energy + Delta-G solvation = -3049.168657 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.24633 -39.36458 -36.41974 -36.21687 -34.33626 -32.83572 -31.70524 -30.31420 -27.76871 -26.79092 -25.59792 -24.38267 -23.42366 -21.92649 -20.23590 -20.16048 -18.94541 -18.07799 -17.25409 -16.83813 -16.56299 -16.29984 -15.90800 -15.31680 -15.25437 -14.83207 -14.54457 -14.50531 -13.81778 -13.67045 -13.51550 -13.40005 -13.04723 -12.99075 -12.81837 -12.76559 -12.72592 -12.22771 -12.20070 -12.08771 -11.86714 -11.82941 -11.65574 -11.50425 -11.44038 -11.26975 -10.89569 -10.85742 -9.78830 -8.99105 -7.94937 -5.24355 1.46016 1.49817 1.55946 1.61121 1.95290 2.55874 3.37639 3.42150 3.60880 3.78703 3.84394 3.92922 4.06225 4.16379 4.25160 4.35852 4.44008 4.46153 4.51648 4.59190 4.63066 4.67416 4.74750 4.81848 4.85911 4.92586 4.94612 4.97881 5.02576 5.11760 5.20637 5.22459 5.27065 5.31620 5.39861 5.44145 5.50057 5.51411 5.58769 6.26798 6.60490 7.13849 7.32186 8.09494 8.30826 9.28818 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.028731 B = 0.003514 C = 0.003192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.317308 B = 7966.035340 C = 8770.984871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.117 4.117 3 C -0.106 4.106 4 C -0.122 4.122 5 C 0.517 3.483 6 O -0.600 6.600 7 N -0.625 5.625 8 C 0.105 3.895 9 C -0.089 4.089 10 H 0.096 0.904 11 C -0.143 4.143 12 C -0.098 4.098 13 H 0.062 0.938 14 C 0.164 3.836 15 N -0.750 5.750 16 C -0.243 4.243 17 H 0.080 0.920 18 C -0.081 4.081 19 N -0.974 5.974 20 Si 0.976 3.024 21 H -0.274 1.274 22 H -0.298 1.298 23 H -0.277 1.277 24 C 0.118 3.882 25 H 0.048 0.952 26 H 0.047 0.953 27 H 0.067 0.933 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.048 0.952 31 H 0.048 0.952 32 H 0.121 0.879 33 H 0.120 0.880 34 H 0.118 0.882 35 H 0.087 0.913 36 H 0.055 0.945 37 H 0.084 0.916 38 H 0.055 0.945 39 H 0.036 0.964 40 H 0.029 0.971 41 H 0.369 0.631 42 H 0.250 0.750 43 H 0.062 0.938 44 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.389 -25.518 1.334 26.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.154 4.154 3 C -0.144 4.144 4 C -0.161 4.161 5 C 0.309 3.691 6 O -0.482 6.482 7 N -0.358 5.358 8 C -0.016 4.016 9 C -0.109 4.109 10 H 0.114 0.886 11 C -0.200 4.200 12 C -0.118 4.118 13 H 0.080 0.920 14 C 0.038 3.962 15 N -0.393 5.393 16 C -0.375 4.375 17 H 0.098 0.902 18 C -0.273 4.273 19 N -0.625 5.625 20 Si 0.805 3.195 21 H -0.200 1.200 22 H -0.225 1.225 23 H -0.203 1.203 24 C -0.006 4.006 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.086 0.914 28 H 0.095 0.905 29 H 0.095 0.905 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.139 0.861 33 H 0.138 0.862 34 H 0.136 0.864 35 H 0.105 0.895 36 H 0.074 0.926 37 H 0.103 0.897 38 H 0.074 0.926 39 H 0.054 0.946 40 H 0.047 0.953 41 H 0.200 0.800 42 H 0.059 0.941 43 H 0.080 0.920 44 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -5.748 -25.042 1.421 25.733 hybrid contribution 0.105 1.926 0.029 1.929 sum -5.644 -23.116 1.449 23.839 Atomic orbital electron populations 1.21797 0.95967 1.02150 1.01472 1.21505 0.95925 0.94678 1.03291 1.21374 0.93277 0.98006 1.01743 1.21723 0.97309 0.90294 1.06764 1.21432 0.79825 0.93320 0.74555 1.90699 1.55682 1.48983 1.52789 1.49248 1.05395 1.08922 1.72249 1.22808 0.85242 0.92783 1.00795 1.22080 0.96329 0.91753 1.00738 0.88597 1.21872 0.94158 1.02785 1.01205 1.22197 0.94075 0.97298 0.98237 0.91970 1.21027 0.95233 0.82275 0.97660 1.42708 1.18883 1.01622 1.76068 1.19637 0.97211 0.87945 1.32695 0.90182 1.25641 0.99596 0.99027 1.03002 1.69843 1.26135 1.13405 1.53095 0.85172 0.78462 0.77613 0.78287 1.20039 1.22475 1.20275 1.22131 0.93198 0.85892 0.99345 0.93333 0.93346 0.91389 0.90548 0.90538 0.93301 0.93328 0.86137 0.86170 0.86381 0.89471 0.92613 0.89698 0.92574 0.94594 0.95340 0.79964 0.94129 0.92008 0.94065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.04 9.91 71.98 0.71 -1.33 16 2 C -0.12 -1.43 5.93 30.59 0.18 -1.25 16 3 C -0.11 -2.01 4.50 30.60 0.14 -1.87 16 4 C -0.12 -2.05 4.68 29.85 0.14 -1.91 16 5 C 0.52 15.07 7.91 87.66 0.69 15.76 16 6 O -0.60 -24.28 16.25 -3.03 -0.05 -24.33 16 7 N -0.63 -17.16 3.32 -807.90 -2.68 -19.84 16 8 C 0.11 1.82 6.46 86.53 0.56 2.38 16 9 C -0.09 -1.83 3.66 -9.89 -0.04 -1.86 16 10 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 11 C -0.14 -2.56 7.94 71.98 0.57 -1.99 16 12 C -0.10 -3.14 3.10 -9.88 -0.03 -3.17 16 13 H 0.06 2.21 8.14 -2.38 -0.02 2.19 16 14 C 0.16 6.32 4.40 86.38 0.38 6.70 16 15 N -0.75 -38.97 5.48 -343.44 -1.88 -40.85 16 16 C -0.24 -13.77 9.99 84.03 0.84 -12.93 16 17 H 0.08 4.27 7.83 -2.91 -0.02 4.24 16 18 C -0.08 -4.77 5.50 84.86 0.47 -4.30 16 19 N -0.97 -62.00 13.06 21.65 0.28 -61.72 16 20 Si 0.98 47.02 29.55 68.60 2.03 49.04 16 21 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 22 H -0.30 -14.59 7.11 99.48 0.71 -13.89 16 23 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 24 C 0.12 4.17 6.41 86.54 0.55 4.72 16 25 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 26 H 0.05 0.69 8.14 -2.38 -0.02 0.67 16 27 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.08 0.74 8.14 -2.38 -0.02 0.72 16 30 H 0.05 1.11 8.10 -2.39 -0.02 1.10 16 31 H 0.05 1.11 8.10 -2.39 -0.02 1.10 16 32 H 0.12 1.36 7.95 -2.39 -0.02 1.34 16 33 H 0.12 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.12 1.12 7.30 -2.38 -0.02 1.10 16 35 H 0.09 1.34 7.83 -2.39 -0.02 1.32 16 36 H 0.05 1.10 6.90 -2.39 -0.02 1.09 16 37 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.06 1.16 6.67 -2.39 -0.02 1.14 16 39 H 0.04 1.35 6.49 -2.38 -0.02 1.33 16 40 H 0.03 1.08 6.94 -2.39 -0.02 1.07 16 41 H 0.37 20.98 7.61 -92.71 -0.71 20.27 16 42 H 0.25 15.48 8.31 -92.71 -0.77 14.71 16 43 H 0.06 2.32 7.75 -2.39 -0.02 2.30 16 44 H 0.04 1.77 7.88 -2.39 -0.02 1.75 16 Total: -1.00 -76.18 348.31 3.12 -73.06 By element: Atomic # 1 Polarization: 25.43 SS G_CDS: 0.25 Total: 25.69 kcal Atomic # 6 Polarization: -6.22 SS G_CDS: 5.17 Total: -1.05 kcal Atomic # 7 Polarization: -118.13 SS G_CDS: -4.28 Total: -122.41 kcal Atomic # 8 Polarization: -24.28 SS G_CDS: -0.05 Total: -24.33 kcal Atomic # 14 Polarization: 47.02 SS G_CDS: 2.03 Total: 49.04 kcal Total: -76.18 3.12 -73.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724568472.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.823 kcal (2) G-P(sol) polarization free energy of solvation -76.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds