Wall clock time and date at job start Mon Mar 30 2020 01:08:23
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46498 * 1
3 3 C 1.46506 * 119.99755 * 2 1
4 4 C 1.52997 * 109.47289 * 270.00277 * 3 2 1
5 5 C 1.53002 * 109.46817 * 299.99814 * 4 3 2
6 6 C 1.52997 * 109.47232 * 60.00053 * 4 3 2
7 7 C 1.52996 * 109.47131 * 180.02562 * 4 3 2
8 8 N 1.46499 * 109.47369 * 179.97438 * 7 4 3
9 9 C 1.36937 * 120.00316 * 179.97438 * 8 7 4
10 10 H 1.07998 * 119.99647 * 359.97438 * 9 8 7
11 11 C 1.38814 * 120.00249 * 180.02562 * 9 8 7
12 12 N 1.31615 * 120.00063 * 180.02562 * 11 9 8
13 13 Si 1.86799 * 119.99522 * 359.97438 * 11 9 8
14 14 H 1.48505 * 109.47146 * 90.00500 * 13 11 9
15 15 H 1.48501 * 109.46731 * 210.00013 * 13 11 9
16 16 H 1.48493 * 109.47548 * 329.99883 * 13 11 9
17 17 C 1.34774 * 120.00377 * 180.02562 * 2 1 3
18 18 O 1.21289 * 120.00200 * 179.97438 * 17 2 1
19 19 C 1.50696 * 120.00038 * 0.02562 * 17 2 1
20 20 C 1.52994 * 109.47431 * 179.97438 * 19 17 2
21 21 C 1.53002 * 117.50218 * 243.62052 * 20 19 17
22 22 C 1.53002 * 60.00028 * 252.50824 * 21 20 19
23 23 H 1.08999 * 109.46923 * 90.00257 * 1 2 3
24 24 H 1.08997 * 109.46694 * 209.99389 * 1 2 3
25 25 H 1.08995 * 109.47258 * 329.99665 * 1 2 3
26 26 H 1.09001 * 109.47060 * 30.00546 * 3 2 1
27 27 H 1.09004 * 109.47073 * 150.00035 * 3 2 1
28 28 H 1.09002 * 109.47070 * 60.00180 * 5 4 3
29 29 H 1.09000 * 109.46986 * 180.02562 * 5 4 3
30 30 H 1.08996 * 109.47407 * 299.99780 * 5 4 3
31 31 H 1.08998 * 109.47624 * 59.99682 * 6 4 3
32 32 H 1.09000 * 109.47140 * 180.02562 * 6 4 3
33 33 H 1.09002 * 109.46777 * 299.99578 * 6 4 3
34 34 H 1.09001 * 109.46997 * 299.99574 * 7 4 3
35 35 H 1.09004 * 109.47298 * 59.99717 * 7 4 3
36 36 H 0.96998 * 119.99822 * 0.02562 * 8 7 4
37 37 H 0.97001 * 119.99776 * 180.02562 * 12 11 9
38 38 H 1.09003 * 109.47424 * 300.00151 * 19 17 2
39 39 H 1.09003 * 109.47504 * 60.00089 * 19 17 2
40 40 H 1.09005 * 115.55149 * 29.33099 * 20 19 17
41 41 H 1.09001 * 117.49820 * 0.02562 * 21 20 19
42 42 H 1.09003 * 117.49783 * 145.02147 * 21 20 19
43 43 H 1.08998 * 117.49564 * 252.50359 * 22 21 20
44 44 H 1.08999 * 117.49428 * 107.48649 * 22 21 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1975 1.2688 0.0000
4 6 2.4524 1.7106 -1.4425
5 6 3.2793 0.6443 -2.1637
6 6 1.1155 1.8935 -2.1637
7 6 3.2179 3.0353 -1.4424
8 7 3.4625 3.4580 -2.8236
9 6 4.1357 4.6239 -3.0738
10 1 4.4859 5.2320 -2.2529
11 6 4.3671 5.0247 -4.3825
12 7 5.0146 6.1451 -4.6230
13 14 3.7607 3.9731 -5.8023
14 1 2.3872 4.3941 -6.1788
15 1 4.6670 4.1430 -6.9664
16 1 3.7458 2.5465 -5.3907
17 6 2.1389 -1.1671 -0.0005
18 8 3.3518 -1.1671 -0.0010
19 6 1.3855 -2.4722 -0.0017
20 6 2.3798 -3.6351 -0.0027
21 6 2.3806 -4.5629 -1.2194
22 6 1.8113 -5.0508 0.1144
23 1 -0.3633 0.0000 -1.0277
24 1 -0.3632 -0.8900 0.5137
25 1 -0.3633 0.8899 0.5139
26 1 1.6084 2.0284 0.5139
27 1 3.1499 1.1385 0.5138
28 1 2.7344 -0.2997 -2.1637
29 1 3.4614 0.9592 -3.1912
30 1 4.2318 0.5140 -1.6500
31 1 0.5264 2.6530 -1.6498
32 1 1.2972 2.2078 -3.1915
33 1 0.5706 0.9495 -2.1637
34 1 2.6291 3.7951 -0.9285
35 1 4.1703 2.9045 -0.9287
36 1 3.1470 2.9123 -3.5609
37 1 5.1759 6.4253 -5.5375
38 1 0.7585 -2.5307 0.8880
39 1 0.7592 -2.5295 -0.8920
40 1 3.3369 -3.4357 0.4792
41 1 1.6731 -4.3445 -2.0193
42 1 3.3385 -4.9739 -1.5382
43 1 2.3947 -5.7828 0.6728
44 1 0.7290 -5.1536 0.1920
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001725137463.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:08:23
Heat of formation + Delta-G solvation = -0.824180 kcal
Electronic energy + Delta-G solvation = -21457.651992 eV
Core-core repulsion = 18411.319757 eV
Total energy + Delta-G solvation = -3046.332235 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 268.189 amu
Computer time = 0.42 seconds
Orbital eigenvalues (eV)
-40.34380 -37.93249 -36.87597 -35.18291 -33.13987 -30.80447 -29.76250 -27.87904
-26.75531 -26.00502 -25.21419 -22.61583 -22.20273 -20.98023 -19.30273 -18.58092
-17.57311 -17.14135 -16.45593 -15.90268 -15.33069 -14.57118 -14.37116 -14.06479
-13.98386 -13.77722 -13.22116 -13.16323 -12.88526 -12.75181 -12.50452 -12.29669
-12.21712 -11.76300 -11.61092 -11.33143 -11.31410 -11.19083 -10.85460 -10.72784
-10.59505 -10.38301 -10.32634 -10.24253 -9.99557 -9.65407 -9.52717 -8.84398
-8.58978 -7.15598 -5.72204 -3.06145 2.62913 2.94374 3.39730 3.42895
3.47484 3.57355 4.33373 4.45615 4.63255 4.66754 4.82025 4.89486
5.03081 5.08452 5.18248 5.19800 5.28462 5.31971 5.37847 5.43019
5.47480 5.57563 5.65391 5.68968 5.72984 5.86553 5.87635 5.93356
6.07051 6.08656 6.18022 6.31607 6.42849 6.56183 6.61995 6.70635
6.80187 6.89100 7.34946 8.05403 8.19468 8.47533 9.27278 9.99883
10.20689 11.46652
Molecular weight = 268.19amu
Principal moments of inertia in cm(-1)
A = 0.027597 B = 0.004267 C = 0.004031
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1014.356090 B = 6559.675888 C = 6945.254093
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.075 3.925
2 N -0.613 5.613
3 C 0.128 3.872
4 C -0.090 4.090
5 C -0.124 4.124
6 C -0.137 4.137
7 C 0.170 3.830
8 N -0.752 5.752
9 C -0.239 4.239
10 H 0.090 0.910
11 C 0.003 3.997
12 N -0.936 5.936
13 Si 0.881 3.119
14 H -0.284 1.284
15 H -0.291 1.291
16 H -0.277 1.277
17 C 0.513 3.487
18 O -0.528 6.528
19 C -0.109 4.109
20 C -0.139 4.139
21 C -0.178 4.178
22 C -0.182 4.182
23 H 0.060 0.940
24 H 0.067 0.933
25 H 0.073 0.927
26 H 0.076 0.924
27 H 0.085 0.915
28 H 0.040 0.960
29 H 0.051 0.949
30 H 0.060 0.940
31 H 0.053 0.947
32 H 0.057 0.943
33 H 0.049 0.951
34 H 0.026 0.974
35 H 0.027 0.973
36 H 0.361 0.639
37 H 0.259 0.741
38 H 0.094 0.906
39 H 0.091 0.909
40 H 0.118 0.882
41 H 0.093 0.907
42 H 0.094 0.906
43 H 0.094 0.906
44 H 0.092 0.908
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -13.127 -20.208 11.142 26.548
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.068 4.068
2 N -0.346 5.346
3 C 0.005 3.995
4 C -0.092 4.092
5 C -0.182 4.182
6 C -0.195 4.195
7 C 0.042 3.958
8 N -0.398 5.398
9 C -0.369 4.369
10 H 0.108 0.892
11 C -0.192 4.192
12 N -0.585 5.585
13 Si 0.711 3.289
14 H -0.211 1.211
15 H -0.217 1.217
16 H -0.204 1.204
17 C 0.301 3.699
18 O -0.404 6.404
19 C -0.149 4.149
20 C -0.158 4.158
21 C -0.215 4.215
22 C -0.219 4.219
23 H 0.078 0.922
24 H 0.086 0.914
25 H 0.092 0.908
26 H 0.095 0.905
27 H 0.103 0.897
28 H 0.059 0.941
29 H 0.070 0.930
30 H 0.079 0.921
31 H 0.072 0.928
32 H 0.076 0.924
33 H 0.068 0.932
34 H 0.044 0.956
35 H 0.045 0.955
36 H 0.195 0.805
37 H 0.069 0.931
38 H 0.112 0.888
39 H 0.109 0.891
40 H 0.136 0.864
41 H 0.111 0.889
42 H 0.113 0.887
43 H 0.112 0.888
44 H 0.111 0.889
Dipole moment (debyes) X Y Z Total
from point charges -12.355 -19.990 11.187 26.027
hybrid contribution -0.529 -0.552 -1.248 1.464
sum -12.884 -20.542 9.939 26.206
Atomic orbital electron populations
1.21934 0.79880 1.02947 1.02083 1.47804 1.06745 1.06299 1.73755
1.21546 0.97589 0.83645 0.96686 1.21170 0.96272 0.96959 0.94773
1.21736 0.99703 0.96470 1.00240 1.21912 0.96089 1.00367 1.01102
1.20558 0.96254 0.91230 0.87728 1.42733 1.69456 1.26083 1.01548
1.19084 1.27505 0.96802 0.93536 0.89239 1.24643 1.00614 0.97178
0.96805 1.69698 1.46322 1.23079 1.19363 0.86595 0.78458 0.80399
0.83401 1.21118 1.21699 1.20373 1.20472 0.88188 0.85140 0.76078
1.90718 1.13831 1.87096 1.48756 1.21253 0.98131 0.91617 1.03872
1.22071 1.00999 0.89430 1.03294 1.23023 1.02885 1.03984 0.91564
1.22991 1.00771 0.97153 1.01001 0.92183 0.91403 0.90820 0.90521
0.89685 0.94068 0.93000 0.92122 0.92806 0.92429 0.93241 0.95618
0.95463 0.80487 0.93136 0.88767 0.89060 0.86368 0.88901 0.88736
0.88757 0.88906
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.07 0.55 9.27 59.85 0.55 1.10 16
2 N -0.61 -6.78 2.40 -181.57 -0.44 -7.22 16
3 C 0.13 1.69 4.63 -4.04 -0.02 1.67 16
4 C -0.09 -1.44 0.60 -154.51 -0.09 -1.54 16
5 C -0.12 -2.18 6.96 37.16 0.26 -1.93 16
6 C -0.14 -2.02 7.71 37.16 0.29 -1.73 16
7 C 0.17 3.40 5.15 -4.04 -0.02 3.38 16
8 N -0.75 -18.41 4.81 -59.91 -0.29 -18.70 16
9 C -0.24 -6.96 10.47 -15.06 -0.16 -7.12 16
10 H 0.09 2.78 8.06 -52.49 -0.42 2.35 16
11 C 0.00 0.09 5.50 -17.43 -0.10 -0.01 16
12 N -0.94 -30.08 13.97 55.49 0.78 -29.30 16
13 Si 0.88 22.75 27.73 -169.99 -4.71 18.03 16
14 H -0.28 -7.21 7.11 56.52 0.40 -6.81 16
15 H -0.29 -7.58 7.11 56.52 0.40 -7.18 16
16 H -0.28 -6.83 6.52 56.52 0.37 -6.46 16
17 C 0.51 6.33 6.08 -10.99 -0.07 6.26 16
18 O -0.53 -8.60 13.33 5.55 0.07 -8.53 16
19 C -0.11 -0.95 4.53 -27.89 -0.13 -1.07 16
20 C -0.14 -1.34 5.41 -90.62 -0.49 -1.83 16
21 C -0.18 -1.56 10.18 -26.73 -0.27 -1.83 16
22 C -0.18 -1.35 10.25 -26.73 -0.27 -1.63 16
23 H 0.06 0.44 6.26 -51.93 -0.33 0.11 16
24 H 0.07 0.34 6.44 -51.93 -0.33 0.01 16
25 H 0.07 0.47 7.89 -51.93 -0.41 0.06 16
26 H 0.08 0.87 7.89 -51.93 -0.41 0.46 16
27 H 0.08 1.26 7.42 -51.93 -0.39 0.87 16
28 H 0.04 0.67 6.14 -51.93 -0.32 0.35 16
29 H 0.05 1.01 6.86 -51.93 -0.36 0.65 16
30 H 0.06 1.15 7.73 -51.93 -0.40 0.75 16
31 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16
32 H 0.06 0.98 6.86 -51.93 -0.36 0.63 16
33 H 0.05 0.61 5.33 -51.93 -0.28 0.33 16
34 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16
35 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16
36 H 0.36 8.71 3.22 -40.82 -0.13 8.58 16
37 H 0.26 7.90 8.31 -40.82 -0.34 7.56 16
38 H 0.09 0.61 7.40 -51.93 -0.38 0.23 16
39 H 0.09 0.68 7.84 -51.93 -0.41 0.28 16
40 H 0.12 1.37 7.31 -51.93 -0.38 1.00 16
41 H 0.09 0.76 8.03 -51.93 -0.42 0.34 16
42 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16
43 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16
44 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16
LS Contribution 337.59 15.07 5.09 5.09
Total: -1.00 -34.03 337.59 -7.44 -41.46
By element:
Atomic # 1 Polarization: 12.85 SS G_CDS: -7.42 Total: 5.43 kcal
Atomic # 6 Polarization: -5.75 SS G_CDS: -0.52 Total: -6.27 kcal
Atomic # 7 Polarization: -55.27 SS G_CDS: 0.05 Total: -55.22 kcal
Atomic # 8 Polarization: -8.60 SS G_CDS: 0.07 Total: -8.53 kcal
Atomic # 14 Polarization: 22.75 SS G_CDS: -4.71 Total: 18.03 kcal
Total LS contribution 5.09 Total: 5.09 kcal
Total: -34.03 -7.44 -41.46 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001725137463.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 40.641 kcal
(2) G-P(sol) polarization free energy of solvation -34.026 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.615 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.439 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.465 kcal
(6) G-S(sol) free energy of system = (1) + (5) -0.824 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.42 seconds