Wall clock time and date at job start Mon Mar 30 2020 01:08:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46506 * 119.99755 * 2 1 4 4 C 1.52997 * 109.47289 * 270.00277 * 3 2 1 5 5 C 1.53002 * 109.46817 * 299.99814 * 4 3 2 6 6 C 1.52997 * 109.47232 * 60.00053 * 4 3 2 7 7 C 1.52996 * 109.47131 * 180.02562 * 4 3 2 8 8 N 1.46499 * 109.47369 * 179.97438 * 7 4 3 9 9 C 1.36937 * 120.00316 * 179.97438 * 8 7 4 10 10 H 1.07998 * 119.99647 * 359.97438 * 9 8 7 11 11 C 1.38814 * 120.00249 * 180.02562 * 9 8 7 12 12 N 1.31615 * 120.00063 * 180.02562 * 11 9 8 13 13 Si 1.86799 * 119.99522 * 359.97438 * 11 9 8 14 14 H 1.48505 * 109.47146 * 90.00500 * 13 11 9 15 15 H 1.48501 * 109.46731 * 210.00013 * 13 11 9 16 16 H 1.48493 * 109.47548 * 329.99883 * 13 11 9 17 17 C 1.34774 * 120.00377 * 180.02562 * 2 1 3 18 18 O 1.21289 * 120.00200 * 179.97438 * 17 2 1 19 19 C 1.50696 * 120.00038 * 0.02562 * 17 2 1 20 20 C 1.52994 * 109.47431 * 179.97438 * 19 17 2 21 21 C 1.53002 * 117.50218 * 243.62052 * 20 19 17 22 22 C 1.53002 * 60.00028 * 252.50824 * 21 20 19 23 23 H 1.08999 * 109.46923 * 90.00257 * 1 2 3 24 24 H 1.08997 * 109.46694 * 209.99389 * 1 2 3 25 25 H 1.08995 * 109.47258 * 329.99665 * 1 2 3 26 26 H 1.09001 * 109.47060 * 30.00546 * 3 2 1 27 27 H 1.09004 * 109.47073 * 150.00035 * 3 2 1 28 28 H 1.09002 * 109.47070 * 60.00180 * 5 4 3 29 29 H 1.09000 * 109.46986 * 180.02562 * 5 4 3 30 30 H 1.08996 * 109.47407 * 299.99780 * 5 4 3 31 31 H 1.08998 * 109.47624 * 59.99682 * 6 4 3 32 32 H 1.09000 * 109.47140 * 180.02562 * 6 4 3 33 33 H 1.09002 * 109.46777 * 299.99578 * 6 4 3 34 34 H 1.09001 * 109.46997 * 299.99574 * 7 4 3 35 35 H 1.09004 * 109.47298 * 59.99717 * 7 4 3 36 36 H 0.96998 * 119.99822 * 0.02562 * 8 7 4 37 37 H 0.97001 * 119.99776 * 180.02562 * 12 11 9 38 38 H 1.09003 * 109.47424 * 300.00151 * 19 17 2 39 39 H 1.09003 * 109.47504 * 60.00089 * 19 17 2 40 40 H 1.09005 * 115.55149 * 29.33099 * 20 19 17 41 41 H 1.09001 * 117.49820 * 0.02562 * 21 20 19 42 42 H 1.09003 * 117.49783 * 145.02147 * 21 20 19 43 43 H 1.08998 * 117.49564 * 252.50359 * 22 21 20 44 44 H 1.08999 * 117.49428 * 107.48649 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4524 1.7106 -1.4425 5 6 3.2793 0.6443 -2.1637 6 6 1.1155 1.8935 -2.1637 7 6 3.2179 3.0353 -1.4424 8 7 3.4625 3.4580 -2.8236 9 6 4.1357 4.6239 -3.0738 10 1 4.4859 5.2320 -2.2529 11 6 4.3671 5.0247 -4.3825 12 7 5.0146 6.1451 -4.6230 13 14 3.7607 3.9731 -5.8023 14 1 2.3872 4.3941 -6.1788 15 1 4.6670 4.1430 -6.9664 16 1 3.7458 2.5465 -5.3907 17 6 2.1389 -1.1671 -0.0005 18 8 3.3518 -1.1671 -0.0010 19 6 1.3855 -2.4722 -0.0017 20 6 2.3798 -3.6351 -0.0027 21 6 2.3806 -4.5629 -1.2194 22 6 1.8113 -5.0508 0.1144 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3632 -0.8900 0.5137 25 1 -0.3633 0.8899 0.5139 26 1 1.6084 2.0284 0.5139 27 1 3.1499 1.1385 0.5138 28 1 2.7344 -0.2997 -2.1637 29 1 3.4614 0.9592 -3.1912 30 1 4.2318 0.5140 -1.6500 31 1 0.5264 2.6530 -1.6498 32 1 1.2972 2.2078 -3.1915 33 1 0.5706 0.9495 -2.1637 34 1 2.6291 3.7951 -0.9285 35 1 4.1703 2.9045 -0.9287 36 1 3.1470 2.9123 -3.5609 37 1 5.1759 6.4253 -5.5375 38 1 0.7585 -2.5307 0.8880 39 1 0.7592 -2.5295 -0.8920 40 1 3.3369 -3.4357 0.4792 41 1 1.6731 -4.3445 -2.0193 42 1 3.3385 -4.9739 -1.5382 43 1 2.3947 -5.7828 0.6728 44 1 0.7290 -5.1536 0.1920 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725137463.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:23 Heat of formation + Delta-G solvation = -0.824180 kcal Electronic energy + Delta-G solvation = -21457.651992 eV Core-core repulsion = 18411.319757 eV Total energy + Delta-G solvation = -3046.332235 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.34380 -37.93249 -36.87597 -35.18291 -33.13987 -30.80447 -29.76250 -27.87904 -26.75531 -26.00502 -25.21419 -22.61583 -22.20273 -20.98023 -19.30273 -18.58092 -17.57311 -17.14135 -16.45593 -15.90268 -15.33069 -14.57118 -14.37116 -14.06479 -13.98386 -13.77722 -13.22116 -13.16323 -12.88526 -12.75181 -12.50452 -12.29669 -12.21712 -11.76300 -11.61092 -11.33143 -11.31410 -11.19083 -10.85460 -10.72784 -10.59505 -10.38301 -10.32634 -10.24253 -9.99557 -9.65407 -9.52717 -8.84398 -8.58978 -7.15598 -5.72204 -3.06145 2.62913 2.94374 3.39730 3.42895 3.47484 3.57355 4.33373 4.45615 4.63255 4.66754 4.82025 4.89486 5.03081 5.08452 5.18248 5.19800 5.28462 5.31971 5.37847 5.43019 5.47480 5.57563 5.65391 5.68968 5.72984 5.86553 5.87635 5.93356 6.07051 6.08656 6.18022 6.31607 6.42849 6.56183 6.61995 6.70635 6.80187 6.89100 7.34946 8.05403 8.19468 8.47533 9.27278 9.99883 10.20689 11.46652 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.027597 B = 0.004267 C = 0.004031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.356090 B = 6559.675888 C = 6945.254093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.613 5.613 3 C 0.128 3.872 4 C -0.090 4.090 5 C -0.124 4.124 6 C -0.137 4.137 7 C 0.170 3.830 8 N -0.752 5.752 9 C -0.239 4.239 10 H 0.090 0.910 11 C 0.003 3.997 12 N -0.936 5.936 13 Si 0.881 3.119 14 H -0.284 1.284 15 H -0.291 1.291 16 H -0.277 1.277 17 C 0.513 3.487 18 O -0.528 6.528 19 C -0.109 4.109 20 C -0.139 4.139 21 C -0.178 4.178 22 C -0.182 4.182 23 H 0.060 0.940 24 H 0.067 0.933 25 H 0.073 0.927 26 H 0.076 0.924 27 H 0.085 0.915 28 H 0.040 0.960 29 H 0.051 0.949 30 H 0.060 0.940 31 H 0.053 0.947 32 H 0.057 0.943 33 H 0.049 0.951 34 H 0.026 0.974 35 H 0.027 0.973 36 H 0.361 0.639 37 H 0.259 0.741 38 H 0.094 0.906 39 H 0.091 0.909 40 H 0.118 0.882 41 H 0.093 0.907 42 H 0.094 0.906 43 H 0.094 0.906 44 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.127 -20.208 11.142 26.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.346 5.346 3 C 0.005 3.995 4 C -0.092 4.092 5 C -0.182 4.182 6 C -0.195 4.195 7 C 0.042 3.958 8 N -0.398 5.398 9 C -0.369 4.369 10 H 0.108 0.892 11 C -0.192 4.192 12 N -0.585 5.585 13 Si 0.711 3.289 14 H -0.211 1.211 15 H -0.217 1.217 16 H -0.204 1.204 17 C 0.301 3.699 18 O -0.404 6.404 19 C -0.149 4.149 20 C -0.158 4.158 21 C -0.215 4.215 22 C -0.219 4.219 23 H 0.078 0.922 24 H 0.086 0.914 25 H 0.092 0.908 26 H 0.095 0.905 27 H 0.103 0.897 28 H 0.059 0.941 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.068 0.932 34 H 0.044 0.956 35 H 0.045 0.955 36 H 0.195 0.805 37 H 0.069 0.931 38 H 0.112 0.888 39 H 0.109 0.891 40 H 0.136 0.864 41 H 0.111 0.889 42 H 0.113 0.887 43 H 0.112 0.888 44 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -12.355 -19.990 11.187 26.027 hybrid contribution -0.529 -0.552 -1.248 1.464 sum -12.884 -20.542 9.939 26.206 Atomic orbital electron populations 1.21934 0.79880 1.02947 1.02083 1.47804 1.06745 1.06299 1.73755 1.21546 0.97589 0.83645 0.96686 1.21170 0.96272 0.96959 0.94773 1.21736 0.99703 0.96470 1.00240 1.21912 0.96089 1.00367 1.01102 1.20558 0.96254 0.91230 0.87728 1.42733 1.69456 1.26083 1.01548 1.19084 1.27505 0.96802 0.93536 0.89239 1.24643 1.00614 0.97178 0.96805 1.69698 1.46322 1.23079 1.19363 0.86595 0.78458 0.80399 0.83401 1.21118 1.21699 1.20373 1.20472 0.88188 0.85140 0.76078 1.90718 1.13831 1.87096 1.48756 1.21253 0.98131 0.91617 1.03872 1.22071 1.00999 0.89430 1.03294 1.23023 1.02885 1.03984 0.91564 1.22991 1.00771 0.97153 1.01001 0.92183 0.91403 0.90820 0.90521 0.89685 0.94068 0.93000 0.92122 0.92806 0.92429 0.93241 0.95618 0.95463 0.80487 0.93136 0.88767 0.89060 0.86368 0.88901 0.88736 0.88757 0.88906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.55 9.27 59.85 0.55 1.10 16 2 N -0.61 -6.78 2.40 -181.57 -0.44 -7.22 16 3 C 0.13 1.69 4.63 -4.04 -0.02 1.67 16 4 C -0.09 -1.44 0.60 -154.51 -0.09 -1.54 16 5 C -0.12 -2.18 6.96 37.16 0.26 -1.93 16 6 C -0.14 -2.02 7.71 37.16 0.29 -1.73 16 7 C 0.17 3.40 5.15 -4.04 -0.02 3.38 16 8 N -0.75 -18.41 4.81 -59.91 -0.29 -18.70 16 9 C -0.24 -6.96 10.47 -15.06 -0.16 -7.12 16 10 H 0.09 2.78 8.06 -52.49 -0.42 2.35 16 11 C 0.00 0.09 5.50 -17.43 -0.10 -0.01 16 12 N -0.94 -30.08 13.97 55.49 0.78 -29.30 16 13 Si 0.88 22.75 27.73 -169.99 -4.71 18.03 16 14 H -0.28 -7.21 7.11 56.52 0.40 -6.81 16 15 H -0.29 -7.58 7.11 56.52 0.40 -7.18 16 16 H -0.28 -6.83 6.52 56.52 0.37 -6.46 16 17 C 0.51 6.33 6.08 -10.99 -0.07 6.26 16 18 O -0.53 -8.60 13.33 5.55 0.07 -8.53 16 19 C -0.11 -0.95 4.53 -27.89 -0.13 -1.07 16 20 C -0.14 -1.34 5.41 -90.62 -0.49 -1.83 16 21 C -0.18 -1.56 10.18 -26.73 -0.27 -1.83 16 22 C -0.18 -1.35 10.25 -26.73 -0.27 -1.63 16 23 H 0.06 0.44 6.26 -51.93 -0.33 0.11 16 24 H 0.07 0.34 6.44 -51.93 -0.33 0.01 16 25 H 0.07 0.47 7.89 -51.93 -0.41 0.06 16 26 H 0.08 0.87 7.89 -51.93 -0.41 0.46 16 27 H 0.08 1.26 7.42 -51.93 -0.39 0.87 16 28 H 0.04 0.67 6.14 -51.93 -0.32 0.35 16 29 H 0.05 1.01 6.86 -51.93 -0.36 0.65 16 30 H 0.06 1.15 7.73 -51.93 -0.40 0.75 16 31 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.06 0.98 6.86 -51.93 -0.36 0.63 16 33 H 0.05 0.61 5.33 -51.93 -0.28 0.33 16 34 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.36 8.71 3.22 -40.82 -0.13 8.58 16 37 H 0.26 7.90 8.31 -40.82 -0.34 7.56 16 38 H 0.09 0.61 7.40 -51.93 -0.38 0.23 16 39 H 0.09 0.68 7.84 -51.93 -0.41 0.28 16 40 H 0.12 1.37 7.31 -51.93 -0.38 1.00 16 41 H 0.09 0.76 8.03 -51.93 -0.42 0.34 16 42 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 337.59 15.07 5.09 5.09 Total: -1.00 -34.03 337.59 -7.44 -41.46 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: -7.42 Total: 5.43 kcal Atomic # 6 Polarization: -5.75 SS G_CDS: -0.52 Total: -6.27 kcal Atomic # 7 Polarization: -55.27 SS G_CDS: 0.05 Total: -55.22 kcal Atomic # 8 Polarization: -8.60 SS G_CDS: 0.07 Total: -8.53 kcal Atomic # 14 Polarization: 22.75 SS G_CDS: -4.71 Total: 18.03 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -34.03 -7.44 -41.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725137463.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.641 kcal (2) G-P(sol) polarization free energy of solvation -34.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds