Wall clock time and date at job start Mon Mar 30 2020 01:08:23
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46498 * 1
3 3 C 1.46506 * 119.99755 * 2 1
4 4 C 1.52997 * 109.47289 * 270.00277 * 3 2 1
5 5 C 1.53002 * 109.46817 * 299.99814 * 4 3 2
6 6 C 1.52997 * 109.47232 * 60.00053 * 4 3 2
7 7 C 1.52996 * 109.47131 * 180.02562 * 4 3 2
8 8 N 1.46499 * 109.47369 * 179.97438 * 7 4 3
9 9 C 1.36937 * 120.00316 * 179.97438 * 8 7 4
10 10 H 1.07998 * 119.99647 * 359.97438 * 9 8 7
11 11 C 1.38814 * 120.00249 * 180.02562 * 9 8 7
12 12 N 1.31615 * 120.00063 * 180.02562 * 11 9 8
13 13 Si 1.86799 * 119.99522 * 359.97438 * 11 9 8
14 14 H 1.48505 * 109.47146 * 90.00500 * 13 11 9
15 15 H 1.48501 * 109.46731 * 210.00013 * 13 11 9
16 16 H 1.48493 * 109.47548 * 329.99883 * 13 11 9
17 17 C 1.34774 * 120.00377 * 180.02562 * 2 1 3
18 18 O 1.21289 * 120.00200 * 179.97438 * 17 2 1
19 19 C 1.50696 * 120.00038 * 0.02562 * 17 2 1
20 20 C 1.52994 * 109.47431 * 179.97438 * 19 17 2
21 21 C 1.53002 * 117.50218 * 243.62052 * 20 19 17
22 22 C 1.53002 * 60.00028 * 252.50824 * 21 20 19
23 23 H 1.08999 * 109.46923 * 90.00257 * 1 2 3
24 24 H 1.08997 * 109.46694 * 209.99389 * 1 2 3
25 25 H 1.08995 * 109.47258 * 329.99665 * 1 2 3
26 26 H 1.09001 * 109.47060 * 30.00546 * 3 2 1
27 27 H 1.09004 * 109.47073 * 150.00035 * 3 2 1
28 28 H 1.09002 * 109.47070 * 60.00180 * 5 4 3
29 29 H 1.09000 * 109.46986 * 180.02562 * 5 4 3
30 30 H 1.08996 * 109.47407 * 299.99780 * 5 4 3
31 31 H 1.08998 * 109.47624 * 59.99682 * 6 4 3
32 32 H 1.09000 * 109.47140 * 180.02562 * 6 4 3
33 33 H 1.09002 * 109.46777 * 299.99578 * 6 4 3
34 34 H 1.09001 * 109.46997 * 299.99574 * 7 4 3
35 35 H 1.09004 * 109.47298 * 59.99717 * 7 4 3
36 36 H 0.96998 * 119.99822 * 0.02562 * 8 7 4
37 37 H 0.97001 * 119.99776 * 180.02562 * 12 11 9
38 38 H 1.09003 * 109.47424 * 300.00151 * 19 17 2
39 39 H 1.09003 * 109.47504 * 60.00089 * 19 17 2
40 40 H 1.09005 * 115.55149 * 29.33099 * 20 19 17
41 41 H 1.09001 * 117.49820 * 0.02562 * 21 20 19
42 42 H 1.09003 * 117.49783 * 145.02147 * 21 20 19
43 43 H 1.08998 * 117.49564 * 252.50359 * 22 21 20
44 44 H 1.08999 * 117.49428 * 107.48649 * 22 21 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1975 1.2688 0.0000
4 6 2.4524 1.7106 -1.4425
5 6 3.2793 0.6443 -2.1637
6 6 1.1155 1.8935 -2.1637
7 6 3.2179 3.0353 -1.4424
8 7 3.4625 3.4580 -2.8236
9 6 4.1357 4.6239 -3.0738
10 1 4.4859 5.2320 -2.2529
11 6 4.3671 5.0247 -4.3825
12 7 5.0146 6.1451 -4.6230
13 14 3.7607 3.9731 -5.8023
14 1 2.3872 4.3941 -6.1788
15 1 4.6670 4.1430 -6.9664
16 1 3.7458 2.5465 -5.3907
17 6 2.1389 -1.1671 -0.0005
18 8 3.3518 -1.1671 -0.0010
19 6 1.3855 -2.4722 -0.0017
20 6 2.3798 -3.6351 -0.0027
21 6 2.3806 -4.5629 -1.2194
22 6 1.8113 -5.0508 0.1144
23 1 -0.3633 0.0000 -1.0277
24 1 -0.3632 -0.8900 0.5137
25 1 -0.3633 0.8899 0.5139
26 1 1.6084 2.0284 0.5139
27 1 3.1499 1.1385 0.5138
28 1 2.7344 -0.2997 -2.1637
29 1 3.4614 0.9592 -3.1912
30 1 4.2318 0.5140 -1.6500
31 1 0.5264 2.6530 -1.6498
32 1 1.2972 2.2078 -3.1915
33 1 0.5706 0.9495 -2.1637
34 1 2.6291 3.7951 -0.9285
35 1 4.1703 2.9045 -0.9287
36 1 3.1470 2.9123 -3.5609
37 1 5.1759 6.4253 -5.5375
38 1 0.7585 -2.5307 0.8880
39 1 0.7592 -2.5295 -0.8920
40 1 3.3369 -3.4357 0.4792
41 1 1.6731 -4.3445 -2.0193
42 1 3.3385 -4.9739 -1.5382
43 1 2.3947 -5.7828 0.6728
44 1 0.7290 -5.1536 0.1920
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001725137463.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:08:23
Heat of formation + Delta-G solvation = -22.394913 kcal
Electronic energy + Delta-G solvation = -21458.587369 eV
Core-core repulsion = 18411.319757 eV
Total energy + Delta-G solvation = -3047.267612 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 268.189 amu
Computer time = 0.51 seconds
Orbital eigenvalues (eV)
-41.30943 -39.04278 -37.81452 -36.43640 -34.91246 -32.80774 -30.64140 -28.76857
-28.10369 -27.50001 -26.37878 -24.08022 -23.21017 -21.83980 -20.46537 -20.00624
-19.29991 -17.97822 -17.39913 -17.02386 -16.45959 -16.24175 -15.63983 -15.45188
-15.21616 -14.87267 -14.55305 -14.37073 -14.03609 -13.90083 -13.79491 -13.45355
-13.23547 -13.11747 -12.88304 -12.58252 -12.45545 -12.33416 -12.25308 -12.23472
-12.11100 -11.75179 -11.67931 -11.50904 -11.25786 -11.00622 -10.91831 -10.60551
-9.53352 -9.30187 -8.05274 -5.37405 1.32485 1.36176 1.43254 1.73441
2.10045 2.44846 2.93801 3.25795 3.59220 3.65651 3.79621 3.89224
3.91351 4.04211 4.06135 4.19389 4.39105 4.45140 4.50330 4.58969
4.64856 4.71714 4.74845 4.76983 4.81453 4.83953 4.88902 4.94065
5.00351 5.06611 5.10054 5.13977 5.21126 5.27982 5.37507 5.37725
5.49445 5.62984 5.73541 6.19492 6.51233 7.05689 7.30805 7.82692
8.02249 9.16738
Molecular weight = 268.19amu
Principal moments of inertia in cm(-1)
A = 0.027597 B = 0.004267 C = 0.004031
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1014.356090 B = 6559.675888 C = 6945.254093
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.065 3.935
2 N -0.610 5.610
3 C 0.134 3.866
4 C -0.081 4.081
5 C -0.113 4.113
6 C -0.133 4.133
7 C 0.166 3.834
8 N -0.753 5.753
9 C -0.233 4.233
10 H 0.057 0.943
11 C -0.063 4.063
12 N -0.984 5.984
13 Si 0.951 3.049
14 H -0.271 1.271
15 H -0.293 1.293
16 H -0.261 1.261
17 C 0.504 3.496
18 O -0.579 6.579
19 C -0.098 4.098
20 C -0.159 4.159
21 C -0.189 4.189
22 C -0.160 4.160
23 H 0.067 0.933
24 H 0.096 0.904
25 H 0.087 0.913
26 H 0.102 0.898
27 H 0.061 0.939
28 H 0.054 0.946
29 H 0.030 0.970
30 H 0.035 0.965
31 H 0.068 0.932
32 H 0.033 0.967
33 H 0.078 0.922
34 H 0.035 0.965
35 H 0.011 0.989
36 H 0.365 0.635
37 H 0.258 0.742
38 H 0.124 0.876
39 H 0.112 0.888
40 H 0.087 0.913
41 H 0.102 0.898
42 H 0.084 0.916
43 H 0.097 0.903
44 H 0.115 0.885
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -16.677 -22.528 11.392 30.256
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.076 4.076
2 N -0.342 5.342
3 C 0.010 3.990
4 C -0.082 4.082
5 C -0.170 4.170
6 C -0.190 4.190
7 C 0.039 3.961
8 N -0.399 5.399
9 C -0.364 4.364
10 H 0.075 0.925
11 C -0.254 4.254
12 N -0.635 5.635
13 Si 0.778 3.222
14 H -0.196 1.196
15 H -0.220 1.220
16 H -0.186 1.186
17 C 0.293 3.707
18 O -0.459 6.459
19 C -0.137 4.137
20 C -0.178 4.178
21 C -0.226 4.226
22 C -0.196 4.196
23 H 0.085 0.915
24 H 0.115 0.885
25 H 0.105 0.895
26 H 0.120 0.880
27 H 0.080 0.920
28 H 0.073 0.927
29 H 0.049 0.951
30 H 0.054 0.946
31 H 0.087 0.913
32 H 0.052 0.948
33 H 0.097 0.903
34 H 0.053 0.947
35 H 0.029 0.971
36 H 0.200 0.800
37 H 0.067 0.933
38 H 0.142 0.858
39 H 0.130 0.870
40 H 0.105 0.895
41 H 0.120 0.880
42 H 0.103 0.897
43 H 0.115 0.885
44 H 0.134 0.866
Dipole moment (debyes) X Y Z Total
from point charges -15.965 -22.343 11.474 29.762
hybrid contribution 0.629 0.184 -1.205 1.372
sum -15.336 -22.159 10.269 28.838
Atomic orbital electron populations
1.22250 0.76964 1.05199 1.03192 1.47888 1.08419 1.04973 1.72887
1.21325 0.97697 0.85572 0.94356 1.21074 0.96291 0.93900 0.96968
1.21616 0.99133 0.97659 0.98641 1.21887 0.95284 1.02413 0.99390
1.20725 0.96302 0.93807 0.85246 1.42725 1.68861 1.24700 1.03622
1.19075 1.26892 0.97687 0.92754 0.92537 1.25460 1.01444 0.98727
0.99798 1.69877 1.48326 1.25306 1.19958 0.85477 0.78185 0.79302
0.79250 1.19643 1.22001 1.18576 1.21241 0.87870 0.86565 0.74983
1.90709 1.16261 1.87866 1.51047 1.21276 0.97682 0.88639 1.06140
1.22010 1.00549 0.91143 1.04096 1.23100 1.02998 1.04223 0.92278
1.23076 1.02004 0.95279 0.99286 0.91465 0.88510 0.89468 0.87991
0.92012 0.92678 0.95129 0.94573 0.91317 0.94807 0.90320 0.94722
0.97091 0.80013 0.93283 0.85837 0.86976 0.89468 0.87950 0.89750
0.88452 0.86627
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.07 0.63 9.27 127.77 1.18 1.82 16
2 N -0.61 -11.72 2.40 -846.76 -2.03 -13.75 16
3 C 0.13 3.32 4.63 86.38 0.40 3.72 16
4 C -0.08 -2.49 0.60 -52.18 -0.03 -2.52 16
5 C -0.11 -3.95 6.96 71.98 0.50 -3.45 16
6 C -0.13 -3.50 7.71 71.98 0.55 -2.94 16
7 C 0.17 6.64 5.15 86.38 0.44 7.09 16
8 N -0.75 -36.96 4.81 -343.45 -1.65 -38.61 16
9 C -0.23 -13.88 10.47 84.03 0.88 -12.99 16
10 H 0.06 3.66 8.06 -2.91 -0.02 3.64 16
11 C -0.06 -3.84 5.50 84.86 0.47 -3.38 16
12 N -0.98 -64.81 13.97 21.65 0.30 -64.50 16
13 Si 0.95 47.18 27.73 68.60 1.90 49.08 16
14 H -0.27 -12.79 7.11 99.48 0.71 -12.09 16
15 H -0.29 -14.64 7.11 99.48 0.71 -13.94 16
16 H -0.26 -12.06 6.52 99.48 0.65 -11.41 16
17 C 0.50 11.50 6.08 87.66 0.53 12.03 16
18 O -0.58 -19.10 13.33 -3.06 -0.04 -19.14 16
19 C -0.10 -1.38 4.53 29.84 0.14 -1.25 16
20 C -0.16 -2.82 5.41 -10.79 -0.06 -2.87 16
21 C -0.19 -3.01 10.18 30.60 0.31 -2.70 16
22 C -0.16 -1.94 10.25 30.60 0.31 -1.63 16
23 H 0.07 0.60 6.26 -2.39 -0.01 0.59 16
24 H 0.10 0.42 6.44 -2.39 -0.02 0.41 16
25 H 0.09 0.67 7.89 -2.39 -0.02 0.65 16
26 H 0.10 2.01 7.89 -2.39 -0.02 1.99 16
27 H 0.06 1.83 7.42 -2.38 -0.02 1.81 16
28 H 0.05 1.74 6.14 -2.39 -0.01 1.73 16
29 H 0.03 1.16 6.86 -2.39 -0.02 1.15 16
30 H 0.04 1.41 7.73 -2.39 -0.02 1.39 16
31 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16
32 H 0.03 1.06 6.86 -2.39 -0.02 1.04 16
33 H 0.08 1.61 5.33 -2.39 -0.01 1.60 16
34 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16
35 H 0.01 0.48 8.14 -2.38 -0.02 0.46 16
36 H 0.37 17.32 3.22 -92.71 -0.30 17.02 16
37 H 0.26 16.15 8.31 -92.71 -0.77 15.37 16
38 H 0.12 1.01 7.40 -2.39 -0.02 1.00 16
39 H 0.11 1.15 7.84 -2.39 -0.02 1.13 16
40 H 0.09 2.09 7.31 -2.38 -0.02 2.08 16
41 H 0.10 1.41 8.03 -2.39 -0.02 1.39 16
42 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16
43 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16
44 H 0.12 0.90 8.14 -2.39 -0.02 0.88 16
Total: -1.00 -77.35 337.59 4.73 -72.62
By element:
Atomic # 1 Polarization: 22.75 SS G_CDS: 0.62 Total: 23.37 kcal
Atomic # 6 Polarization: -14.71 SS G_CDS: 5.64 Total: -9.07 kcal
Atomic # 7 Polarization: -113.48 SS G_CDS: -3.38 Total: -116.86 kcal
Atomic # 8 Polarization: -19.10 SS G_CDS: -0.04 Total: -19.14 kcal
Atomic # 14 Polarization: 47.18 SS G_CDS: 1.90 Total: 49.08 kcal
Total: -77.35 4.73 -72.62 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001725137463.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 50.226 kcal
(2) G-P(sol) polarization free energy of solvation -77.353 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.127 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.733 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.621 kcal
(6) G-S(sol) free energy of system = (1) + (5) -22.395 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.51 seconds