Wall clock time and date at job start Mon Mar 30 2020 01:08:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46506 * 119.99755 * 2 1 4 4 C 1.52997 * 109.47289 * 270.00277 * 3 2 1 5 5 C 1.53002 * 109.46817 * 299.99814 * 4 3 2 6 6 C 1.52997 * 109.47232 * 60.00053 * 4 3 2 7 7 C 1.52996 * 109.47131 * 180.02562 * 4 3 2 8 8 N 1.46499 * 109.47369 * 179.97438 * 7 4 3 9 9 C 1.36937 * 120.00316 * 179.97438 * 8 7 4 10 10 H 1.07998 * 119.99647 * 359.97438 * 9 8 7 11 11 C 1.38814 * 120.00249 * 180.02562 * 9 8 7 12 12 N 1.31615 * 120.00063 * 180.02562 * 11 9 8 13 13 Si 1.86799 * 119.99522 * 359.97438 * 11 9 8 14 14 H 1.48505 * 109.47146 * 90.00500 * 13 11 9 15 15 H 1.48501 * 109.46731 * 210.00013 * 13 11 9 16 16 H 1.48493 * 109.47548 * 329.99883 * 13 11 9 17 17 C 1.34774 * 120.00377 * 180.02562 * 2 1 3 18 18 O 1.21289 * 120.00200 * 179.97438 * 17 2 1 19 19 C 1.50696 * 120.00038 * 0.02562 * 17 2 1 20 20 C 1.52994 * 109.47431 * 179.97438 * 19 17 2 21 21 C 1.53002 * 117.50218 * 243.62052 * 20 19 17 22 22 C 1.53002 * 60.00028 * 252.50824 * 21 20 19 23 23 H 1.08999 * 109.46923 * 90.00257 * 1 2 3 24 24 H 1.08997 * 109.46694 * 209.99389 * 1 2 3 25 25 H 1.08995 * 109.47258 * 329.99665 * 1 2 3 26 26 H 1.09001 * 109.47060 * 30.00546 * 3 2 1 27 27 H 1.09004 * 109.47073 * 150.00035 * 3 2 1 28 28 H 1.09002 * 109.47070 * 60.00180 * 5 4 3 29 29 H 1.09000 * 109.46986 * 180.02562 * 5 4 3 30 30 H 1.08996 * 109.47407 * 299.99780 * 5 4 3 31 31 H 1.08998 * 109.47624 * 59.99682 * 6 4 3 32 32 H 1.09000 * 109.47140 * 180.02562 * 6 4 3 33 33 H 1.09002 * 109.46777 * 299.99578 * 6 4 3 34 34 H 1.09001 * 109.46997 * 299.99574 * 7 4 3 35 35 H 1.09004 * 109.47298 * 59.99717 * 7 4 3 36 36 H 0.96998 * 119.99822 * 0.02562 * 8 7 4 37 37 H 0.97001 * 119.99776 * 180.02562 * 12 11 9 38 38 H 1.09003 * 109.47424 * 300.00151 * 19 17 2 39 39 H 1.09003 * 109.47504 * 60.00089 * 19 17 2 40 40 H 1.09005 * 115.55149 * 29.33099 * 20 19 17 41 41 H 1.09001 * 117.49820 * 0.02562 * 21 20 19 42 42 H 1.09003 * 117.49783 * 145.02147 * 21 20 19 43 43 H 1.08998 * 117.49564 * 252.50359 * 22 21 20 44 44 H 1.08999 * 117.49428 * 107.48649 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4524 1.7106 -1.4425 5 6 3.2793 0.6443 -2.1637 6 6 1.1155 1.8935 -2.1637 7 6 3.2179 3.0353 -1.4424 8 7 3.4625 3.4580 -2.8236 9 6 4.1357 4.6239 -3.0738 10 1 4.4859 5.2320 -2.2529 11 6 4.3671 5.0247 -4.3825 12 7 5.0146 6.1451 -4.6230 13 14 3.7607 3.9731 -5.8023 14 1 2.3872 4.3941 -6.1788 15 1 4.6670 4.1430 -6.9664 16 1 3.7458 2.5465 -5.3907 17 6 2.1389 -1.1671 -0.0005 18 8 3.3518 -1.1671 -0.0010 19 6 1.3855 -2.4722 -0.0017 20 6 2.3798 -3.6351 -0.0027 21 6 2.3806 -4.5629 -1.2194 22 6 1.8113 -5.0508 0.1144 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3632 -0.8900 0.5137 25 1 -0.3633 0.8899 0.5139 26 1 1.6084 2.0284 0.5139 27 1 3.1499 1.1385 0.5138 28 1 2.7344 -0.2997 -2.1637 29 1 3.4614 0.9592 -3.1912 30 1 4.2318 0.5140 -1.6500 31 1 0.5264 2.6530 -1.6498 32 1 1.2972 2.2078 -3.1915 33 1 0.5706 0.9495 -2.1637 34 1 2.6291 3.7951 -0.9285 35 1 4.1703 2.9045 -0.9287 36 1 3.1470 2.9123 -3.5609 37 1 5.1759 6.4253 -5.5375 38 1 0.7585 -2.5307 0.8880 39 1 0.7592 -2.5295 -0.8920 40 1 3.3369 -3.4357 0.4792 41 1 1.6731 -4.3445 -2.0193 42 1 3.3385 -4.9739 -1.5382 43 1 2.3947 -5.7828 0.6728 44 1 0.7290 -5.1536 0.1920 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725137463.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:23 Heat of formation + Delta-G solvation = -22.394913 kcal Electronic energy + Delta-G solvation = -21458.587369 eV Core-core repulsion = 18411.319757 eV Total energy + Delta-G solvation = -3047.267612 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.30943 -39.04278 -37.81452 -36.43640 -34.91246 -32.80774 -30.64140 -28.76857 -28.10369 -27.50001 -26.37878 -24.08022 -23.21017 -21.83980 -20.46537 -20.00624 -19.29991 -17.97822 -17.39913 -17.02386 -16.45959 -16.24175 -15.63983 -15.45188 -15.21616 -14.87267 -14.55305 -14.37073 -14.03609 -13.90083 -13.79491 -13.45355 -13.23547 -13.11747 -12.88304 -12.58252 -12.45545 -12.33416 -12.25308 -12.23472 -12.11100 -11.75179 -11.67931 -11.50904 -11.25786 -11.00622 -10.91831 -10.60551 -9.53352 -9.30187 -8.05274 -5.37405 1.32485 1.36176 1.43254 1.73441 2.10045 2.44846 2.93801 3.25795 3.59220 3.65651 3.79621 3.89224 3.91351 4.04211 4.06135 4.19389 4.39105 4.45140 4.50330 4.58969 4.64856 4.71714 4.74845 4.76983 4.81453 4.83953 4.88902 4.94065 5.00351 5.06611 5.10054 5.13977 5.21126 5.27982 5.37507 5.37725 5.49445 5.62984 5.73541 6.19492 6.51233 7.05689 7.30805 7.82692 8.02249 9.16738 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.027597 B = 0.004267 C = 0.004031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.356090 B = 6559.675888 C = 6945.254093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.610 5.610 3 C 0.134 3.866 4 C -0.081 4.081 5 C -0.113 4.113 6 C -0.133 4.133 7 C 0.166 3.834 8 N -0.753 5.753 9 C -0.233 4.233 10 H 0.057 0.943 11 C -0.063 4.063 12 N -0.984 5.984 13 Si 0.951 3.049 14 H -0.271 1.271 15 H -0.293 1.293 16 H -0.261 1.261 17 C 0.504 3.496 18 O -0.579 6.579 19 C -0.098 4.098 20 C -0.159 4.159 21 C -0.189 4.189 22 C -0.160 4.160 23 H 0.067 0.933 24 H 0.096 0.904 25 H 0.087 0.913 26 H 0.102 0.898 27 H 0.061 0.939 28 H 0.054 0.946 29 H 0.030 0.970 30 H 0.035 0.965 31 H 0.068 0.932 32 H 0.033 0.967 33 H 0.078 0.922 34 H 0.035 0.965 35 H 0.011 0.989 36 H 0.365 0.635 37 H 0.258 0.742 38 H 0.124 0.876 39 H 0.112 0.888 40 H 0.087 0.913 41 H 0.102 0.898 42 H 0.084 0.916 43 H 0.097 0.903 44 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.677 -22.528 11.392 30.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.342 5.342 3 C 0.010 3.990 4 C -0.082 4.082 5 C -0.170 4.170 6 C -0.190 4.190 7 C 0.039 3.961 8 N -0.399 5.399 9 C -0.364 4.364 10 H 0.075 0.925 11 C -0.254 4.254 12 N -0.635 5.635 13 Si 0.778 3.222 14 H -0.196 1.196 15 H -0.220 1.220 16 H -0.186 1.186 17 C 0.293 3.707 18 O -0.459 6.459 19 C -0.137 4.137 20 C -0.178 4.178 21 C -0.226 4.226 22 C -0.196 4.196 23 H 0.085 0.915 24 H 0.115 0.885 25 H 0.105 0.895 26 H 0.120 0.880 27 H 0.080 0.920 28 H 0.073 0.927 29 H 0.049 0.951 30 H 0.054 0.946 31 H 0.087 0.913 32 H 0.052 0.948 33 H 0.097 0.903 34 H 0.053 0.947 35 H 0.029 0.971 36 H 0.200 0.800 37 H 0.067 0.933 38 H 0.142 0.858 39 H 0.130 0.870 40 H 0.105 0.895 41 H 0.120 0.880 42 H 0.103 0.897 43 H 0.115 0.885 44 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -15.965 -22.343 11.474 29.762 hybrid contribution 0.629 0.184 -1.205 1.372 sum -15.336 -22.159 10.269 28.838 Atomic orbital electron populations 1.22250 0.76964 1.05199 1.03192 1.47888 1.08419 1.04973 1.72887 1.21325 0.97697 0.85572 0.94356 1.21074 0.96291 0.93900 0.96968 1.21616 0.99133 0.97659 0.98641 1.21887 0.95284 1.02413 0.99390 1.20725 0.96302 0.93807 0.85246 1.42725 1.68861 1.24700 1.03622 1.19075 1.26892 0.97687 0.92754 0.92537 1.25460 1.01444 0.98727 0.99798 1.69877 1.48326 1.25306 1.19958 0.85477 0.78185 0.79302 0.79250 1.19643 1.22001 1.18576 1.21241 0.87870 0.86565 0.74983 1.90709 1.16261 1.87866 1.51047 1.21276 0.97682 0.88639 1.06140 1.22010 1.00549 0.91143 1.04096 1.23100 1.02998 1.04223 0.92278 1.23076 1.02004 0.95279 0.99286 0.91465 0.88510 0.89468 0.87991 0.92012 0.92678 0.95129 0.94573 0.91317 0.94807 0.90320 0.94722 0.97091 0.80013 0.93283 0.85837 0.86976 0.89468 0.87950 0.89750 0.88452 0.86627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.63 9.27 127.77 1.18 1.82 16 2 N -0.61 -11.72 2.40 -846.76 -2.03 -13.75 16 3 C 0.13 3.32 4.63 86.38 0.40 3.72 16 4 C -0.08 -2.49 0.60 -52.18 -0.03 -2.52 16 5 C -0.11 -3.95 6.96 71.98 0.50 -3.45 16 6 C -0.13 -3.50 7.71 71.98 0.55 -2.94 16 7 C 0.17 6.64 5.15 86.38 0.44 7.09 16 8 N -0.75 -36.96 4.81 -343.45 -1.65 -38.61 16 9 C -0.23 -13.88 10.47 84.03 0.88 -12.99 16 10 H 0.06 3.66 8.06 -2.91 -0.02 3.64 16 11 C -0.06 -3.84 5.50 84.86 0.47 -3.38 16 12 N -0.98 -64.81 13.97 21.65 0.30 -64.50 16 13 Si 0.95 47.18 27.73 68.60 1.90 49.08 16 14 H -0.27 -12.79 7.11 99.48 0.71 -12.09 16 15 H -0.29 -14.64 7.11 99.48 0.71 -13.94 16 16 H -0.26 -12.06 6.52 99.48 0.65 -11.41 16 17 C 0.50 11.50 6.08 87.66 0.53 12.03 16 18 O -0.58 -19.10 13.33 -3.06 -0.04 -19.14 16 19 C -0.10 -1.38 4.53 29.84 0.14 -1.25 16 20 C -0.16 -2.82 5.41 -10.79 -0.06 -2.87 16 21 C -0.19 -3.01 10.18 30.60 0.31 -2.70 16 22 C -0.16 -1.94 10.25 30.60 0.31 -1.63 16 23 H 0.07 0.60 6.26 -2.39 -0.01 0.59 16 24 H 0.10 0.42 6.44 -2.39 -0.02 0.41 16 25 H 0.09 0.67 7.89 -2.39 -0.02 0.65 16 26 H 0.10 2.01 7.89 -2.39 -0.02 1.99 16 27 H 0.06 1.83 7.42 -2.38 -0.02 1.81 16 28 H 0.05 1.74 6.14 -2.39 -0.01 1.73 16 29 H 0.03 1.16 6.86 -2.39 -0.02 1.15 16 30 H 0.04 1.41 7.73 -2.39 -0.02 1.39 16 31 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.03 1.06 6.86 -2.39 -0.02 1.04 16 33 H 0.08 1.61 5.33 -2.39 -0.01 1.60 16 34 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.01 0.48 8.14 -2.38 -0.02 0.46 16 36 H 0.37 17.32 3.22 -92.71 -0.30 17.02 16 37 H 0.26 16.15 8.31 -92.71 -0.77 15.37 16 38 H 0.12 1.01 7.40 -2.39 -0.02 1.00 16 39 H 0.11 1.15 7.84 -2.39 -0.02 1.13 16 40 H 0.09 2.09 7.31 -2.38 -0.02 2.08 16 41 H 0.10 1.41 8.03 -2.39 -0.02 1.39 16 42 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 43 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 44 H 0.12 0.90 8.14 -2.39 -0.02 0.88 16 Total: -1.00 -77.35 337.59 4.73 -72.62 By element: Atomic # 1 Polarization: 22.75 SS G_CDS: 0.62 Total: 23.37 kcal Atomic # 6 Polarization: -14.71 SS G_CDS: 5.64 Total: -9.07 kcal Atomic # 7 Polarization: -113.48 SS G_CDS: -3.38 Total: -116.86 kcal Atomic # 8 Polarization: -19.10 SS G_CDS: -0.04 Total: -19.14 kcal Atomic # 14 Polarization: 47.18 SS G_CDS: 1.90 Total: 49.08 kcal Total: -77.35 4.73 -72.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725137463.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.226 kcal (2) G-P(sol) polarization free energy of solvation -77.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds