Wall clock time and date at job start Mon Mar 30 2020 00:32:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47184 * 2 1 4 4 C 1.53003 * 109.46813 * 179.97438 * 3 2 1 5 5 C 1.50697 * 109.46624 * 179.97438 * 4 3 2 6 6 O 1.21283 * 120.00521 * 359.73045 * 5 4 3 7 7 N 1.34784 * 119.99774 * 180.02562 * 5 4 3 8 8 C 1.46499 * 119.99971 * 359.72768 * 7 5 4 9 9 C 1.46499 * 119.99893 * 179.72962 * 7 5 4 10 10 H 1.08994 * 109.47156 * 359.97438 * 9 7 5 11 11 C 1.52993 * 109.47238 * 120.00062 * 9 7 5 12 12 N 1.46499 * 109.47293 * 304.99842 * 11 9 7 13 13 C 1.36939 * 120.00485 * 179.97438 * 12 11 9 14 14 H 1.08009 * 119.99448 * 0.02562 * 13 12 11 15 15 C 1.38807 * 120.00356 * 179.97438 * 13 12 11 16 16 N 1.31616 * 120.00187 * 180.02562 * 15 13 12 17 17 Si 1.86802 * 119.99983 * 0.02562 * 15 13 12 18 18 H 1.48497 * 109.46934 * 89.99624 * 17 15 13 19 19 H 1.48490 * 109.47129 * 209.99826 * 17 15 13 20 20 H 1.48501 * 109.47119 * 329.99838 * 17 15 13 21 21 C 1.53001 * 109.46682 * 239.99962 * 9 7 5 22 22 C 1.53000 * 117.49825 * 248.74899 * 21 9 7 23 23 C 1.52998 * 117.49818 * 180.08962 * 21 9 7 24 24 H 1.09006 * 109.46890 * 59.99659 * 1 2 3 25 25 H 1.08994 * 109.47397 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47065 * 300.00400 * 1 2 3 27 27 H 1.08998 * 109.47065 * 239.99600 * 2 1 3 28 28 H 1.09001 * 109.46892 * 119.99864 * 2 1 3 29 29 H 1.09001 * 109.46902 * 60.00345 * 3 2 1 30 30 H 1.08993 * 109.47243 * 300.00020 * 3 2 1 31 31 H 1.09001 * 109.46782 * 60.00667 * 4 3 2 32 32 H 1.08993 * 109.47555 * 300.00224 * 4 3 2 33 33 H 1.08999 * 109.47256 * 89.99766 * 8 7 5 34 34 H 1.08998 * 109.47416 * 209.99869 * 8 7 5 35 35 H 1.09008 * 109.47058 * 330.00468 * 8 7 5 36 36 H 1.09008 * 109.47366 * 64.99919 * 11 9 7 37 37 H 1.09004 * 109.47335 * 184.99304 * 11 9 7 38 38 H 0.97003 * 119.99958 * 359.97438 * 12 11 9 39 39 H 0.96998 * 120.00326 * 180.02562 * 16 15 13 40 40 H 1.08995 * 115.55390 * 34.41468 * 21 9 7 41 41 H 1.09002 * 117.49673 * 359.97438 * 22 21 9 42 42 H 1.08998 * 117.50059 * 145.02495 * 22 21 9 43 43 H 1.08997 * 117.50060 * 214.98085 * 23 21 9 44 44 H 1.09003 * 117.49489 * 359.97431 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4424 0.0006 5 6 4.0724 2.8632 0.0000 6 8 3.2843 3.7851 -0.0058 7 7 5.3975 3.1095 -0.0001 8 6 6.3495 1.9960 0.0064 9 6 5.8858 4.4907 -0.0067 10 1 5.0381 5.1757 -0.0114 11 6 6.7348 4.7375 1.2420 12 7 5.9568 4.3987 2.4362 13 6 6.5139 4.5397 3.6792 14 1 7.5268 4.9011 3.7790 15 6 5.7766 4.2193 4.8107 16 7 6.3119 4.3553 6.0054 17 14 4.0245 3.5949 4.6379 18 1 4.0352 2.1140 4.5290 19 1 3.2356 3.9979 5.8297 20 1 3.4098 4.1766 3.4176 21 6 6.7369 4.7246 -1.2565 22 6 8.2393 4.9360 -1.0586 23 6 7.3446 6.1158 -1.4471 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6767 1.9563 -0.8899 31 1 3.9337 0.9285 -0.8892 32 1 3.9330 0.9287 0.8908 33 1 6.5865 1.7145 -1.0196 34 1 7.2616 2.3007 0.5195 35 1 5.9086 1.1440 0.5242 36 1 7.6289 4.1153 1.2023 37 1 7.0244 5.7875 1.2827 38 1 5.0469 4.0745 2.3465 39 1 5.7968 4.1310 6.7961 40 1 6.4176 4.1882 -2.1499 41 1 8.6213 4.9089 -0.0381 42 1 8.9082 4.5391 -1.8222 43 1 7.4253 6.4944 -2.4660 44 1 7.1376 6.8644 -0.6823 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725452402.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:32:09 Heat of formation + Delta-G solvation = -7.760937 kcal Electronic energy + Delta-G solvation = -21637.177639 eV Core-core repulsion = 18590.544603 eV Total energy + Delta-G solvation = -3046.633036 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.05166 -37.95990 -35.40713 -35.01962 -34.13246 -31.46274 -30.54909 -28.42925 -26.58511 -25.02381 -23.82681 -22.44310 -21.70858 -21.22339 -19.82217 -18.66978 -17.45751 -16.84585 -16.29308 -16.04498 -15.13774 -15.01217 -14.40421 -13.99589 -13.84964 -13.64013 -13.53335 -13.08921 -12.65072 -12.58027 -12.42796 -12.31340 -12.03758 -11.65281 -11.57491 -11.35424 -11.17635 -11.14983 -11.02595 -10.85097 -10.74209 -10.60299 -10.37792 -10.13729 -9.82930 -9.58373 -9.42660 -8.87894 -8.36372 -7.21247 -5.76339 -3.11024 2.88633 3.16811 3.38289 3.47392 3.51237 3.93401 4.61223 4.61990 4.78785 4.84452 4.90133 5.00223 5.08453 5.13708 5.22282 5.24999 5.37252 5.46419 5.51422 5.55425 5.61952 5.68306 5.73484 5.74307 5.78241 5.82261 5.86647 5.91774 5.99310 6.06309 6.07287 6.22295 6.23282 6.29797 6.35230 6.40423 6.59921 6.87763 7.64193 7.99390 8.41914 8.44752 9.22639 9.95678 10.16116 11.41905 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.011012 B = 0.008266 C = 0.005160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2542.009025 B = 3386.511093 C = 5424.975010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.125 4.125 3 C -0.106 4.106 4 C -0.140 4.140 5 C 0.510 3.490 6 O -0.543 6.543 7 N -0.599 5.599 8 C 0.082 3.918 9 C 0.156 3.844 10 H 0.103 0.897 11 C 0.147 3.853 12 N -0.751 5.751 13 C -0.243 4.243 14 H 0.090 0.910 15 C 0.008 3.992 16 N -0.934 5.934 17 Si 0.874 3.126 18 H -0.284 1.284 19 H -0.290 1.290 20 H -0.272 1.272 21 C -0.158 4.158 22 C -0.183 4.183 23 C -0.173 4.173 24 H 0.053 0.947 25 H 0.052 0.948 26 H 0.055 0.945 27 H 0.060 0.940 28 H 0.062 0.938 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.090 0.910 32 H 0.093 0.907 33 H 0.050 0.950 34 H 0.080 0.920 35 H 0.068 0.932 36 H 0.035 0.965 37 H 0.036 0.964 38 H 0.363 0.637 39 H 0.259 0.741 40 H 0.102 0.898 41 H 0.108 0.892 42 H 0.089 0.911 43 H 0.091 0.909 44 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.515 -7.498 -17.537 19.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.162 4.162 3 C -0.144 4.144 4 C -0.180 4.180 5 C 0.299 3.701 6 O -0.420 6.420 7 N -0.331 5.331 8 C -0.062 4.062 9 C 0.053 3.947 10 H 0.121 0.879 11 C 0.019 3.981 12 N -0.397 5.397 13 C -0.372 4.372 14 H 0.108 0.892 15 C -0.188 4.188 16 N -0.582 5.582 17 Si 0.704 3.296 18 H -0.211 1.211 19 H -0.216 1.216 20 H -0.198 1.198 21 C -0.177 4.177 22 C -0.219 4.219 23 C -0.211 4.211 24 H 0.072 0.928 25 H 0.071 0.929 26 H 0.074 0.926 27 H 0.079 0.921 28 H 0.081 0.919 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.109 0.891 32 H 0.112 0.888 33 H 0.069 0.931 34 H 0.099 0.901 35 H 0.087 0.913 36 H 0.052 0.948 37 H 0.053 0.947 38 H 0.196 0.804 39 H 0.069 0.931 40 H 0.120 0.880 41 H 0.126 0.874 42 H 0.108 0.892 43 H 0.110 0.890 44 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -2.768 -6.960 -17.348 18.896 hybrid contribution -1.070 -0.517 0.063 1.190 sum -3.838 -7.478 -17.285 19.220 Atomic orbital electron populations 1.21759 0.95825 1.01343 1.02025 1.21547 0.96042 0.96734 1.01905 1.21392 0.92981 0.96458 1.03612 1.21730 0.97880 0.94279 1.04114 1.20736 0.81935 0.91725 0.75725 1.90683 1.54857 1.46521 1.49936 1.47728 1.05632 1.06957 1.72831 1.21729 0.94408 0.89163 1.00865 1.20877 0.97489 0.83127 0.93252 0.87893 1.21095 0.93659 0.98178 0.85120 1.42663 1.14201 1.80797 1.02053 1.19032 0.99122 1.37339 0.81743 0.89239 1.24614 0.97614 1.01497 0.95094 1.69694 1.36885 1.54730 0.96859 0.86669 0.86592 0.78962 0.77361 1.21117 1.21611 1.19780 1.22536 0.95239 1.00648 0.99318 1.23204 0.92713 1.02535 1.03489 1.22964 1.04219 0.91447 1.02472 0.92762 0.92897 0.92603 0.92104 0.91925 0.91177 0.91298 0.89142 0.88838 0.93127 0.90143 0.91327 0.94773 0.94670 0.80389 0.93087 0.87962 0.87401 0.89219 0.89037 0.88318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.91 37.16 0.37 -1.08 16 2 C -0.12 -1.27 5.93 -26.73 -0.16 -1.43 16 3 C -0.11 -1.37 4.50 -26.73 -0.12 -1.49 16 4 C -0.14 -1.81 4.26 -27.88 -0.12 -1.92 16 5 C 0.51 8.66 7.38 -10.98 -0.08 8.58 16 6 O -0.54 -11.24 15.31 5.56 0.09 -11.16 16 7 N -0.60 -9.45 2.24 -173.94 -0.39 -9.84 16 8 C 0.08 1.02 9.61 59.85 0.58 1.59 16 9 C 0.16 2.60 2.59 -67.93 -0.18 2.43 16 10 H 0.10 1.99 6.90 -51.93 -0.36 1.63 16 11 C 0.15 2.86 4.14 -4.05 -0.02 2.85 16 12 N -0.75 -18.49 5.24 -59.91 -0.31 -18.81 16 13 C -0.24 -6.99 10.47 -15.06 -0.16 -7.14 16 14 H 0.09 2.72 8.06 -52.48 -0.42 2.30 16 15 C 0.01 0.23 5.50 -17.43 -0.10 0.13 16 16 N -0.93 -29.76 13.97 55.49 0.78 -28.99 16 17 Si 0.87 23.18 27.74 -169.99 -4.71 18.46 16 18 H -0.28 -7.32 7.11 56.52 0.40 -6.92 16 19 H -0.29 -7.74 7.11 56.52 0.40 -7.33 16 20 H -0.27 -7.24 6.52 56.52 0.37 -6.87 16 21 C -0.16 -2.06 5.48 -90.62 -0.50 -2.56 16 22 C -0.18 -2.14 9.59 -26.69 -0.26 -2.40 16 23 C -0.17 -2.06 9.94 -26.69 -0.27 -2.33 16 24 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 26 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.07 1.06 8.10 -51.93 -0.42 0.64 16 30 H 0.07 0.90 8.10 -51.93 -0.42 0.48 16 31 H 0.09 0.90 8.11 -51.93 -0.42 0.48 16 32 H 0.09 1.18 7.39 -51.93 -0.38 0.79 16 33 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.08 1.08 6.53 -51.93 -0.34 0.74 16 35 H 0.07 0.78 6.44 -51.92 -0.33 0.45 16 36 H 0.03 0.64 5.34 -51.92 -0.28 0.37 16 37 H 0.04 0.70 7.44 -51.93 -0.39 0.31 16 38 H 0.36 9.20 4.93 -40.82 -0.20 9.00 16 39 H 0.26 7.89 8.31 -40.82 -0.34 7.55 16 40 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 41 H 0.11 1.40 5.80 -51.93 -0.30 1.10 16 42 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 44 H 0.10 1.25 7.66 -51.93 -0.40 0.86 16 LS Contribution 346.92 15.07 5.23 5.23 Total: -1.00 -33.89 346.92 -7.97 -41.86 By element: Atomic # 1 Polarization: 15.64 SS G_CDS: -7.64 Total: 8.00 kcal Atomic # 6 Polarization: -3.76 SS G_CDS: -1.00 Total: -4.76 kcal Atomic # 7 Polarization: -57.71 SS G_CDS: 0.07 Total: -57.64 kcal Atomic # 8 Polarization: -11.24 SS G_CDS: 0.09 Total: -11.16 kcal Atomic # 14 Polarization: 23.18 SS G_CDS: -4.71 Total: 18.46 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -33.89 -7.97 -41.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725452402.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.100 kcal (2) G-P(sol) polarization free energy of solvation -33.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds