Wall clock time and date at job start Mon Mar 30 2020 00:32:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47184 * 2 1 4 4 C 1.53003 * 109.46813 * 179.97438 * 3 2 1 5 5 C 1.50697 * 109.46624 * 179.97438 * 4 3 2 6 6 O 1.21283 * 120.00521 * 359.73045 * 5 4 3 7 7 N 1.34784 * 119.99774 * 180.02562 * 5 4 3 8 8 C 1.46499 * 119.99971 * 359.72768 * 7 5 4 9 9 C 1.46499 * 119.99893 * 179.72962 * 7 5 4 10 10 H 1.08994 * 109.47156 * 359.97438 * 9 7 5 11 11 C 1.52993 * 109.47238 * 120.00062 * 9 7 5 12 12 N 1.46499 * 109.47293 * 304.99842 * 11 9 7 13 13 C 1.36939 * 120.00485 * 179.97438 * 12 11 9 14 14 H 1.08009 * 119.99448 * 0.02562 * 13 12 11 15 15 C 1.38807 * 120.00356 * 179.97438 * 13 12 11 16 16 N 1.31616 * 120.00187 * 180.02562 * 15 13 12 17 17 Si 1.86802 * 119.99983 * 0.02562 * 15 13 12 18 18 H 1.48497 * 109.46934 * 89.99624 * 17 15 13 19 19 H 1.48490 * 109.47129 * 209.99826 * 17 15 13 20 20 H 1.48501 * 109.47119 * 329.99838 * 17 15 13 21 21 C 1.53001 * 109.46682 * 239.99962 * 9 7 5 22 22 C 1.53000 * 117.49825 * 248.74899 * 21 9 7 23 23 C 1.52998 * 117.49818 * 180.08962 * 21 9 7 24 24 H 1.09006 * 109.46890 * 59.99659 * 1 2 3 25 25 H 1.08994 * 109.47397 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47065 * 300.00400 * 1 2 3 27 27 H 1.08998 * 109.47065 * 239.99600 * 2 1 3 28 28 H 1.09001 * 109.46892 * 119.99864 * 2 1 3 29 29 H 1.09001 * 109.46902 * 60.00345 * 3 2 1 30 30 H 1.08993 * 109.47243 * 300.00020 * 3 2 1 31 31 H 1.09001 * 109.46782 * 60.00667 * 4 3 2 32 32 H 1.08993 * 109.47555 * 300.00224 * 4 3 2 33 33 H 1.08999 * 109.47256 * 89.99766 * 8 7 5 34 34 H 1.08998 * 109.47416 * 209.99869 * 8 7 5 35 35 H 1.09008 * 109.47058 * 330.00468 * 8 7 5 36 36 H 1.09008 * 109.47366 * 64.99919 * 11 9 7 37 37 H 1.09004 * 109.47335 * 184.99304 * 11 9 7 38 38 H 0.97003 * 119.99958 * 359.97438 * 12 11 9 39 39 H 0.96998 * 120.00326 * 180.02562 * 16 15 13 40 40 H 1.08995 * 115.55390 * 34.41468 * 21 9 7 41 41 H 1.09002 * 117.49673 * 359.97438 * 22 21 9 42 42 H 1.08998 * 117.50059 * 145.02495 * 22 21 9 43 43 H 1.08997 * 117.50060 * 214.98085 * 23 21 9 44 44 H 1.09003 * 117.49489 * 359.97431 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4424 0.0006 5 6 4.0724 2.8632 0.0000 6 8 3.2843 3.7851 -0.0058 7 7 5.3975 3.1095 -0.0001 8 6 6.3495 1.9960 0.0064 9 6 5.8858 4.4907 -0.0067 10 1 5.0381 5.1757 -0.0114 11 6 6.7348 4.7375 1.2420 12 7 5.9568 4.3987 2.4362 13 6 6.5139 4.5397 3.6792 14 1 7.5268 4.9011 3.7790 15 6 5.7766 4.2193 4.8107 16 7 6.3119 4.3553 6.0054 17 14 4.0245 3.5949 4.6379 18 1 4.0352 2.1140 4.5290 19 1 3.2356 3.9979 5.8297 20 1 3.4098 4.1766 3.4176 21 6 6.7369 4.7246 -1.2565 22 6 8.2393 4.9360 -1.0586 23 6 7.3446 6.1158 -1.4471 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6767 1.9563 -0.8899 31 1 3.9337 0.9285 -0.8892 32 1 3.9330 0.9287 0.8908 33 1 6.5865 1.7145 -1.0196 34 1 7.2616 2.3007 0.5195 35 1 5.9086 1.1440 0.5242 36 1 7.6289 4.1153 1.2023 37 1 7.0244 5.7875 1.2827 38 1 5.0469 4.0745 2.3465 39 1 5.7968 4.1310 6.7961 40 1 6.4176 4.1882 -2.1499 41 1 8.6213 4.9089 -0.0381 42 1 8.9082 4.5391 -1.8222 43 1 7.4253 6.4944 -2.4660 44 1 7.1376 6.8644 -0.6823 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725452402.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:32:08 Heat of formation + Delta-G solvation = -28.767589 kcal Electronic energy + Delta-G solvation = -21638.088556 eV Core-core repulsion = 18590.544603 eV Total energy + Delta-G solvation = -3047.543952 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.32104 -39.16812 -36.57061 -36.24863 -35.83146 -33.49274 -31.67503 -29.86250 -27.76789 -26.44899 -25.05900 -23.85387 -23.07515 -22.10370 -21.06458 -20.18102 -19.30968 -18.09272 -17.59240 -17.15725 -16.67732 -16.14514 -15.97909 -15.41944 -15.19544 -14.96886 -14.74726 -14.54159 -14.11270 -13.84200 -13.57310 -13.48678 -13.36711 -13.09515 -13.02149 -12.82331 -12.36326 -12.29039 -12.20522 -12.06559 -12.04837 -11.89854 -11.88403 -11.48417 -11.38263 -11.07896 -10.96105 -10.65939 -9.61156 -9.35248 -8.09978 -5.41380 1.24845 1.30826 1.38071 1.62001 1.99767 2.38659 2.92109 3.21619 3.43275 3.60612 3.86642 3.90877 3.99642 4.01223 4.08512 4.15207 4.24244 4.34471 4.40296 4.43990 4.57069 4.59319 4.70983 4.76751 4.80945 4.84866 4.91630 4.95914 5.02891 5.04772 5.07652 5.10389 5.21726 5.25213 5.32232 5.35631 5.46355 5.59091 5.70105 6.14607 6.43417 7.00106 7.18177 7.77304 7.95393 9.11491 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.011012 B = 0.008266 C = 0.005160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2542.009025 B = 3386.511093 C = 5424.975010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.119 4.119 3 C -0.105 4.105 4 C -0.133 4.133 5 C 0.497 3.503 6 O -0.592 6.592 7 N -0.601 5.601 8 C 0.075 3.925 9 C 0.163 3.837 10 H 0.070 0.930 11 C 0.147 3.853 12 N -0.756 5.756 13 C -0.228 4.228 14 H 0.066 0.934 15 C -0.051 4.051 16 N -0.976 5.976 17 Si 0.938 3.062 18 H -0.267 1.267 19 H -0.292 1.292 20 H -0.279 1.279 21 C -0.159 4.159 22 C -0.169 4.169 23 C -0.173 4.173 24 H 0.055 0.945 25 H 0.068 0.932 26 H 0.042 0.958 27 H 0.083 0.917 28 H 0.065 0.935 29 H 0.037 0.963 30 H 0.061 0.939 31 H 0.129 0.871 32 H 0.101 0.899 33 H 0.087 0.913 34 H 0.068 0.932 35 H 0.081 0.919 36 H 0.050 0.950 37 H 0.030 0.970 38 H 0.360 0.640 39 H 0.259 0.741 40 H 0.119 0.881 41 H 0.091 0.909 42 H 0.117 0.883 43 H 0.115 0.885 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.282 -9.568 -20.020 22.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.156 4.156 3 C -0.143 4.143 4 C -0.173 4.173 5 C 0.287 3.713 6 O -0.473 6.473 7 N -0.332 5.332 8 C -0.066 4.066 9 C 0.059 3.941 10 H 0.088 0.912 11 C 0.020 3.980 12 N -0.401 5.401 13 C -0.359 4.359 14 H 0.084 0.916 15 C -0.243 4.243 16 N -0.627 5.627 17 Si 0.766 3.234 18 H -0.193 1.193 19 H -0.218 1.218 20 H -0.205 1.205 21 C -0.179 4.179 22 C -0.206 4.206 23 C -0.211 4.211 24 H 0.074 0.926 25 H 0.087 0.913 26 H 0.061 0.939 27 H 0.101 0.899 28 H 0.083 0.917 29 H 0.056 0.944 30 H 0.080 0.920 31 H 0.147 0.853 32 H 0.119 0.881 33 H 0.105 0.895 34 H 0.087 0.913 35 H 0.100 0.900 36 H 0.067 0.933 37 H 0.048 0.952 38 H 0.193 0.807 39 H 0.068 0.932 40 H 0.137 0.863 41 H 0.110 0.890 42 H 0.136 0.864 43 H 0.134 0.866 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -2.498 -9.055 -19.873 21.981 hybrid contribution -1.047 0.209 0.794 1.331 sum -3.545 -8.846 -19.079 21.327 Atomic orbital electron populations 1.21783 0.95625 1.02236 1.01532 1.21522 0.96237 0.94760 1.03095 1.21372 0.93258 0.98008 1.01709 1.21800 0.97592 0.91714 1.06173 1.21557 0.81889 0.93002 0.74819 1.90658 1.56092 1.48277 1.52268 1.47893 1.06050 1.07251 1.71993 1.21981 0.93119 0.88267 1.03278 1.20618 0.96342 0.83619 0.93568 0.91166 1.21277 0.94126 0.97912 0.84637 1.42728 1.14389 1.80743 1.02248 1.19048 0.98047 1.35303 0.83463 0.91634 1.25262 1.01336 1.02860 0.94891 1.69832 1.38473 1.56803 0.97604 0.85669 0.81923 0.79227 0.76565 1.19294 1.21835 1.20524 1.22378 0.95598 1.02010 0.97894 1.23212 0.92005 1.01933 1.03436 1.23054 1.03739 0.90836 1.03422 0.92603 0.91268 0.93862 0.89858 0.91659 0.94426 0.92020 0.85308 0.88112 0.89483 0.91300 0.90017 0.93273 0.95233 0.80747 0.93221 0.86319 0.89048 0.86442 0.86630 0.89875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.68 9.91 71.98 0.71 -1.97 16 2 C -0.12 -2.12 5.93 30.60 0.18 -1.93 16 3 C -0.11 -2.59 4.50 30.60 0.14 -2.45 16 4 C -0.13 -3.11 4.26 29.85 0.13 -2.99 16 5 C 0.50 16.39 7.38 87.65 0.65 17.03 16 6 O -0.59 -24.94 15.31 -3.04 -0.05 -24.99 16 7 N -0.60 -17.99 2.24 -822.60 -1.85 -19.84 16 8 C 0.08 1.64 9.61 127.77 1.23 2.87 16 9 C 0.16 5.34 2.59 44.99 0.12 5.46 16 10 H 0.07 2.78 6.90 -2.39 -0.02 2.77 16 11 C 0.15 5.70 4.14 86.38 0.36 6.06 16 12 N -0.76 -37.43 5.24 -343.45 -1.80 -39.23 16 13 C -0.23 -13.31 10.47 84.03 0.88 -12.43 16 14 H 0.07 4.09 8.06 -2.91 -0.02 4.07 16 15 C -0.05 -3.12 5.50 84.86 0.47 -2.65 16 16 N -0.98 -63.38 13.97 21.65 0.30 -63.07 16 17 Si 0.94 48.77 27.74 68.60 1.90 50.67 16 18 H -0.27 -13.06 7.11 99.48 0.71 -12.35 16 19 H -0.29 -15.19 7.11 99.48 0.71 -14.48 16 20 H -0.28 -14.70 6.52 99.48 0.65 -14.05 16 21 C -0.16 -3.82 5.48 -10.79 -0.06 -3.88 16 22 C -0.17 -3.51 9.59 30.62 0.29 -3.22 16 23 C -0.17 -3.77 9.94 30.62 0.30 -3.47 16 24 H 0.05 0.94 8.14 -2.38 -0.02 0.92 16 25 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 27 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 28 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.04 1.15 8.10 -2.39 -0.02 1.13 16 30 H 0.06 1.58 8.10 -2.39 -0.02 1.56 16 31 H 0.13 2.01 8.11 -2.39 -0.02 1.99 16 32 H 0.10 2.24 7.39 -2.39 -0.02 2.22 16 33 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.07 1.68 6.53 -2.39 -0.02 1.66 16 35 H 0.08 1.58 6.44 -2.38 -0.02 1.56 16 36 H 0.05 1.80 5.34 -2.38 -0.01 1.79 16 37 H 0.03 1.19 7.44 -2.38 -0.02 1.18 16 38 H 0.36 18.29 4.93 -92.71 -0.46 17.83 16 39 H 0.26 16.02 8.31 -92.71 -0.77 15.25 16 40 H 0.12 2.52 8.14 -2.39 -0.02 2.50 16 41 H 0.09 2.23 5.80 -2.39 -0.01 2.21 16 42 H 0.12 1.84 8.14 -2.39 -0.02 1.82 16 43 H 0.12 1.98 8.14 -2.39 -0.02 1.97 16 44 H 0.08 2.08 7.66 -2.39 -0.02 2.06 16 Total: -1.00 -75.48 346.92 4.36 -71.12 By element: Atomic # 1 Polarization: 28.45 SS G_CDS: 0.45 Total: 28.90 kcal Atomic # 6 Polarization: -8.96 SS G_CDS: 5.39 Total: -3.57 kcal Atomic # 7 Polarization: -118.80 SS G_CDS: -3.34 Total: -122.14 kcal Atomic # 8 Polarization: -24.94 SS G_CDS: -0.05 Total: -24.99 kcal Atomic # 14 Polarization: 48.77 SS G_CDS: 1.90 Total: 50.67 kcal Total: -75.48 4.36 -71.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725452402.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.354 kcal (2) G-P(sol) polarization free energy of solvation -75.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds