Wall clock time and date at job start Mon Mar 30 2020 00:30:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52993 * 109.47288 * 2 1 4 4 C 1.53008 * 109.47228 * 120.00350 * 2 1 3 5 5 C 1.50696 * 109.46939 * 64.99893 * 4 2 1 6 6 O 1.21283 * 120.00466 * 359.97438 * 5 4 2 7 7 N 1.34781 * 119.99531 * 180.02562 * 5 4 2 8 8 C 1.46494 * 119.99798 * 180.02562 * 7 5 4 9 9 C 1.53008 * 109.47206 * 179.97438 * 8 7 5 10 10 C 1.53003 * 109.47212 * 179.97438 * 9 8 7 11 11 N 1.46496 * 109.46867 * 179.97438 * 10 9 8 12 12 C 1.36935 * 120.00168 * 270.00096 * 11 10 9 13 13 H 1.07997 * 119.99803 * 144.92408 * 12 11 10 14 14 C 1.38812 * 120.00029 * 324.92336 * 12 11 10 15 15 N 1.31620 * 119.99923 * 337.94615 * 14 12 11 16 16 Si 1.86798 * 120.00018 * 157.95106 * 14 12 11 17 17 H 1.48498 * 109.47670 * 59.99599 * 16 14 12 18 18 H 1.48500 * 109.47161 * 180.02562 * 16 14 12 19 19 H 1.48508 * 109.46770 * 299.99456 * 16 14 12 20 20 C 1.46503 * 119.99704 * 90.00219 * 11 10 9 21 21 C 1.53004 * 117.49740 * 183.23422 * 20 11 10 22 22 C 1.52995 * 117.49870 * 114.57730 * 20 11 10 23 23 H 1.09001 * 109.47272 * 59.99979 * 1 2 3 24 24 H 1.09003 * 109.47034 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46841 * 299.99240 * 1 2 3 26 26 H 1.09001 * 109.47024 * 239.99999 * 2 1 3 27 27 H 1.09001 * 109.47431 * 180.02562 * 3 2 1 28 28 H 1.09001 * 109.46981 * 300.00199 * 3 2 1 29 29 H 1.09001 * 109.47089 * 60.00038 * 3 2 1 30 30 H 1.08994 * 109.46434 * 304.99829 * 4 2 1 31 31 H 1.08998 * 109.46500 * 185.00001 * 4 2 1 32 32 H 0.96996 * 120.00286 * 359.97438 * 7 5 4 33 33 H 1.09005 * 109.47552 * 59.99700 * 8 7 5 34 34 H 1.09000 * 109.47521 * 299.99839 * 8 7 5 35 35 H 1.09001 * 109.46702 * 60.00091 * 9 8 7 36 36 H 1.08994 * 109.46972 * 300.00074 * 9 8 7 37 37 H 1.08995 * 109.46805 * 60.00115 * 10 9 8 38 38 H 1.09000 * 109.47048 * 300.00092 * 10 9 8 39 39 H 0.96995 * 119.99672 * 175.76702 * 15 14 12 40 40 H 1.08999 * 115.55313 * 328.90767 * 20 11 10 41 41 H 1.09001 * 117.49599 * 0.02562 * 21 20 11 42 42 H 1.09000 * 117.49619 * 145.02077 * 21 20 11 43 43 H 1.09002 * 117.50220 * 214.97803 * 22 20 11 44 44 H 1.09001 * 117.50083 * 359.97438 * 22 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0401 -0.7214 1.2493 5 6 1.6414 -2.1734 1.1888 6 8 1.0109 -2.5902 0.2402 7 7 1.9845 -3.0086 2.1894 8 6 1.5975 -4.4202 2.1304 9 6 2.1074 -5.1416 3.3797 10 6 1.7026 -6.6158 3.3184 11 7 2.1914 -7.3065 4.5143 12 6 3.4330 -7.8841 4.5120 13 1 4.0309 -7.8825 5.4113 14 6 3.9229 -8.4718 3.3538 15 7 3.0908 -8.8676 2.4139 16 14 5.7631 -8.7010 3.1291 17 1 6.2917 -9.5604 4.2186 18 1 6.0250 -9.3464 1.8176 19 1 6.4356 -7.3776 3.1720 20 6 1.3519 -7.3792 5.7127 21 6 1.9479 -8.0476 6.9533 22 6 0.8594 -8.7609 6.1475 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5137 0.8901 26 1 1.8933 -0.5138 -0.8900 27 1 3.1300 1.4424 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6054 -0.2618 2.1369 31 1 3.1263 -0.6444 1.2951 32 1 2.4884 -2.6752 2.9482 33 1 2.0328 -4.8796 1.2429 34 1 0.5112 -4.4976 2.0838 35 1 1.6724 -4.6823 4.2674 36 1 3.1936 -5.0643 3.4259 37 1 2.1373 -7.0752 2.4308 38 1 0.6163 -6.6927 3.2725 39 1 3.4351 -9.2217 1.5791 40 1 0.6818 -6.5339 5.8694 41 1 2.9648 -8.4328 6.8779 42 1 1.6697 -7.6422 7.9261 43 1 -0.1345 -8.8246 6.5905 44 1 1.1596 -9.6159 5.5416 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731328613.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:30:41 Heat of formation + Delta-G solvation = -15.852211 kcal Electronic energy + Delta-G solvation = -20548.728983 eV Core-core repulsion = 17501.745084 eV Total energy + Delta-G solvation = -3046.983900 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.71363 -37.16925 -35.98342 -34.95767 -33.55826 -31.62056 -29.73178 -28.04955 -27.20021 -25.18851 -23.42349 -21.45767 -20.97713 -20.86489 -19.85321 -19.50899 -16.91276 -16.44669 -15.83629 -15.67631 -15.20775 -14.88454 -14.51222 -14.16027 -13.88502 -13.77610 -13.40834 -12.66691 -12.41847 -12.35404 -12.21884 -11.99758 -11.90159 -11.48302 -11.22165 -11.01069 -10.95048 -10.80746 -10.79799 -10.74859 -10.66938 -10.21448 -10.06302 -9.70404 -9.57847 -9.51290 -9.26473 -8.78400 -8.48251 -6.59800 -5.80802 -3.41983 2.80458 3.33051 3.40328 3.40855 3.41940 4.42434 4.63731 4.77135 4.80512 4.91855 5.16447 5.21356 5.31211 5.35409 5.44843 5.50052 5.57038 5.67090 5.76316 5.77353 5.84770 5.90141 6.01195 6.02629 6.12000 6.24244 6.26559 6.33384 6.40042 6.45763 6.49176 6.65300 6.69210 6.81217 7.02584 7.10559 7.21624 7.65972 7.71299 7.77536 8.41444 8.45039 9.12667 9.75915 10.31595 11.14740 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.020577 B = 0.003810 C = 0.003447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.439293 B = 7347.907216 C = 8121.465529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.081 4.081 3 C -0.148 4.148 4 C -0.138 4.138 5 C 0.506 3.494 6 O -0.542 6.542 7 N -0.728 5.728 8 C 0.121 3.879 9 C -0.145 4.145 10 C 0.149 3.851 11 N -0.552 5.552 12 C -0.260 4.260 13 H 0.065 0.935 14 C 0.012 3.988 15 N -0.882 5.882 16 Si 0.896 3.104 17 H -0.281 1.281 18 H -0.290 1.290 19 H -0.283 1.283 20 C 0.121 3.879 21 C -0.197 4.197 22 C -0.222 4.222 23 H 0.050 0.950 24 H 0.076 0.924 25 H 0.046 0.954 26 H 0.077 0.923 27 H 0.054 0.946 28 H 0.056 0.944 29 H 0.054 0.946 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.398 0.602 33 H 0.066 0.934 34 H 0.061 0.939 35 H 0.049 0.951 36 H 0.065 0.935 37 H 0.102 0.898 38 H 0.028 0.972 39 H 0.256 0.744 40 H 0.086 0.914 41 H 0.096 0.904 42 H 0.073 0.927 43 H 0.069 0.931 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.419 16.119 -0.008 16.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.100 4.100 3 C -0.205 4.205 4 C -0.178 4.178 5 C 0.293 3.707 6 O -0.420 6.420 7 N -0.379 5.379 8 C -0.003 4.003 9 C -0.185 4.185 10 C 0.022 3.978 11 N -0.268 5.268 12 C -0.389 4.389 13 H 0.083 0.917 14 C -0.189 4.189 15 N -0.524 5.524 16 Si 0.725 3.275 17 H -0.207 1.207 18 H -0.215 1.215 19 H -0.209 1.209 20 C 0.012 3.988 21 C -0.235 4.235 22 C -0.263 4.263 23 H 0.069 0.931 24 H 0.095 0.905 25 H 0.065 0.935 26 H 0.096 0.904 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.109 0.891 31 H 0.109 0.891 32 H 0.232 0.768 33 H 0.084 0.916 34 H 0.079 0.921 35 H 0.067 0.933 36 H 0.084 0.916 37 H 0.120 0.880 38 H 0.046 0.954 39 H 0.066 0.934 40 H 0.104 0.896 41 H 0.115 0.885 42 H 0.092 0.908 43 H 0.087 0.913 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -2.839 15.657 -0.864 15.936 hybrid contribution 1.245 -0.076 0.361 1.298 sum -1.594 15.581 -0.503 15.670 Atomic orbital electron populations 1.21962 0.94792 1.03528 1.00777 1.20853 0.96640 0.95139 0.97373 1.21866 1.00833 0.95966 1.01825 1.21784 1.02755 0.92564 1.00736 1.20699 0.79433 0.88256 0.82351 1.90660 1.39978 1.78109 1.33253 1.46229 1.57568 1.10697 1.23418 1.21431 0.99729 0.79084 1.00048 1.22432 1.01652 0.99797 0.94615 1.20860 0.95817 0.87630 0.93479 1.43405 1.14747 1.59754 1.08935 1.19027 0.91178 1.30626 0.98097 0.91693 1.25121 0.97908 0.96764 0.99105 1.70032 1.33255 1.41633 1.07519 0.86483 0.85852 0.77983 0.77190 1.20686 1.21545 1.20905 1.21219 0.96109 0.92448 0.89067 1.23030 0.99354 1.06599 0.94512 1.23362 0.96330 1.01084 1.05541 0.93108 0.90538 0.93499 0.90445 0.92734 0.92510 0.92729 0.89142 0.89103 0.76826 0.91583 0.92075 0.93263 0.91606 0.88014 0.95393 0.93417 0.89649 0.88522 0.90825 0.91261 0.89041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 8.93 37.16 0.33 -1.32 16 2 C -0.08 -0.82 2.57 -90.62 -0.23 -1.05 16 3 C -0.15 -1.14 9.19 37.15 0.34 -0.80 16 4 C -0.14 -1.36 5.18 -27.88 -0.14 -1.50 16 5 C 0.51 7.08 7.55 -10.99 -0.08 6.99 16 6 O -0.54 -9.62 13.97 5.56 0.08 -9.55 16 7 N -0.73 -9.92 5.56 -60.29 -0.33 -10.26 16 8 C 0.12 2.00 5.67 -4.04 -0.02 1.97 16 9 C -0.14 -2.61 5.65 -26.73 -0.15 -2.77 16 10 C 0.15 3.31 5.34 -4.04 -0.02 3.29 16 11 N -0.55 -13.24 2.78 -165.67 -0.46 -13.70 16 12 C -0.26 -6.81 8.63 -15.06 -0.13 -6.94 16 13 H 0.07 1.71 6.55 -52.49 -0.34 1.36 16 14 C 0.01 0.31 4.96 -17.43 -0.09 0.22 16 15 N -0.88 -24.74 11.33 55.49 0.63 -24.11 16 16 Si 0.90 21.07 29.61 -169.99 -5.03 16.03 16 17 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 18 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 19 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 20 C 0.12 2.54 6.56 -67.93 -0.45 2.09 16 21 C -0.20 -3.84 9.80 -26.69 -0.26 -4.10 16 22 C -0.22 -4.52 10.36 -26.70 -0.28 -4.80 16 23 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.08 1.03 5.95 -51.93 -0.31 0.72 16 25 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.08 0.91 7.96 -51.93 -0.41 0.49 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.40 4.38 8.47 -40.82 -0.35 4.03 16 33 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 34 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 37 H 0.10 2.60 5.35 -51.93 -0.28 2.32 16 38 H 0.03 0.60 8.07 -51.93 -0.42 0.18 16 39 H 0.26 6.98 8.32 -40.82 -0.34 6.64 16 40 H 0.09 1.61 8.14 -51.93 -0.42 1.19 16 41 H 0.10 2.06 6.37 -51.93 -0.33 1.73 16 42 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 43 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 44 H 0.09 2.13 8.14 -51.93 -0.42 1.71 16 LS Contribution 354.12 15.07 5.34 5.34 Total: -1.00 -29.60 354.12 -8.88 -38.48 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: -7.92 Total: 6.46 kcal Atomic # 6 Polarization: -7.51 SS G_CDS: -1.18 Total: -8.69 kcal Atomic # 7 Polarization: -47.90 SS G_CDS: -0.17 Total: -48.07 kcal Atomic # 8 Polarization: -9.62 SS G_CDS: 0.08 Total: -9.55 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.03 Total: 16.03 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -29.60 -8.88 -38.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731328613.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.630 kcal (2) G-P(sol) polarization free energy of solvation -29.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds