Wall clock time and date at job start Mon Mar 30 2020 00:30:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52993 * 109.47288 * 2 1 4 4 C 1.53008 * 109.47228 * 120.00350 * 2 1 3 5 5 C 1.50696 * 109.46939 * 64.99893 * 4 2 1 6 6 O 1.21283 * 120.00466 * 359.97438 * 5 4 2 7 7 N 1.34781 * 119.99531 * 180.02562 * 5 4 2 8 8 C 1.46494 * 119.99798 * 180.02562 * 7 5 4 9 9 C 1.53008 * 109.47206 * 179.97438 * 8 7 5 10 10 C 1.53003 * 109.47212 * 179.97438 * 9 8 7 11 11 N 1.46496 * 109.46867 * 179.97438 * 10 9 8 12 12 C 1.36935 * 120.00168 * 270.00096 * 11 10 9 13 13 H 1.07997 * 119.99803 * 144.92408 * 12 11 10 14 14 C 1.38812 * 120.00029 * 324.92336 * 12 11 10 15 15 N 1.31620 * 119.99923 * 337.94615 * 14 12 11 16 16 Si 1.86798 * 120.00018 * 157.95106 * 14 12 11 17 17 H 1.48498 * 109.47670 * 59.99599 * 16 14 12 18 18 H 1.48500 * 109.47161 * 180.02562 * 16 14 12 19 19 H 1.48508 * 109.46770 * 299.99456 * 16 14 12 20 20 C 1.46503 * 119.99704 * 90.00219 * 11 10 9 21 21 C 1.53004 * 117.49740 * 183.23422 * 20 11 10 22 22 C 1.52995 * 117.49870 * 114.57730 * 20 11 10 23 23 H 1.09001 * 109.47272 * 59.99979 * 1 2 3 24 24 H 1.09003 * 109.47034 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46841 * 299.99240 * 1 2 3 26 26 H 1.09001 * 109.47024 * 239.99999 * 2 1 3 27 27 H 1.09001 * 109.47431 * 180.02562 * 3 2 1 28 28 H 1.09001 * 109.46981 * 300.00199 * 3 2 1 29 29 H 1.09001 * 109.47089 * 60.00038 * 3 2 1 30 30 H 1.08994 * 109.46434 * 304.99829 * 4 2 1 31 31 H 1.08998 * 109.46500 * 185.00001 * 4 2 1 32 32 H 0.96996 * 120.00286 * 359.97438 * 7 5 4 33 33 H 1.09005 * 109.47552 * 59.99700 * 8 7 5 34 34 H 1.09000 * 109.47521 * 299.99839 * 8 7 5 35 35 H 1.09001 * 109.46702 * 60.00091 * 9 8 7 36 36 H 1.08994 * 109.46972 * 300.00074 * 9 8 7 37 37 H 1.08995 * 109.46805 * 60.00115 * 10 9 8 38 38 H 1.09000 * 109.47048 * 300.00092 * 10 9 8 39 39 H 0.96995 * 119.99672 * 175.76702 * 15 14 12 40 40 H 1.08999 * 115.55313 * 328.90767 * 20 11 10 41 41 H 1.09001 * 117.49599 * 0.02562 * 21 20 11 42 42 H 1.09000 * 117.49619 * 145.02077 * 21 20 11 43 43 H 1.09002 * 117.50220 * 214.97803 * 22 20 11 44 44 H 1.09001 * 117.50083 * 359.97438 * 22 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0401 -0.7214 1.2493 5 6 1.6414 -2.1734 1.1888 6 8 1.0109 -2.5902 0.2402 7 7 1.9845 -3.0086 2.1894 8 6 1.5975 -4.4202 2.1304 9 6 2.1074 -5.1416 3.3797 10 6 1.7026 -6.6158 3.3184 11 7 2.1914 -7.3065 4.5143 12 6 3.4330 -7.8841 4.5120 13 1 4.0309 -7.8825 5.4113 14 6 3.9229 -8.4718 3.3538 15 7 3.0908 -8.8676 2.4139 16 14 5.7631 -8.7010 3.1291 17 1 6.2917 -9.5604 4.2186 18 1 6.0250 -9.3464 1.8176 19 1 6.4356 -7.3776 3.1720 20 6 1.3519 -7.3792 5.7127 21 6 1.9479 -8.0476 6.9533 22 6 0.8594 -8.7609 6.1475 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5137 0.8901 26 1 1.8933 -0.5138 -0.8900 27 1 3.1300 1.4424 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6054 -0.2618 2.1369 31 1 3.1263 -0.6444 1.2951 32 1 2.4884 -2.6752 2.9482 33 1 2.0328 -4.8796 1.2429 34 1 0.5112 -4.4976 2.0838 35 1 1.6724 -4.6823 4.2674 36 1 3.1936 -5.0643 3.4259 37 1 2.1373 -7.0752 2.4308 38 1 0.6163 -6.6927 3.2725 39 1 3.4351 -9.2217 1.5791 40 1 0.6818 -6.5339 5.8694 41 1 2.9648 -8.4328 6.8779 42 1 1.6697 -7.6422 7.9261 43 1 -0.1345 -8.8246 6.5905 44 1 1.1596 -9.6159 5.5416 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731328613.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:30:40 Heat of formation + Delta-G solvation = -32.957623 kcal Electronic energy + Delta-G solvation = -20549.470730 eV Core-core repulsion = 17501.745084 eV Total energy + Delta-G solvation = -3047.725646 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.84519 -38.87440 -37.04292 -36.15830 -35.23514 -33.34170 -31.32867 -29.12381 -27.92633 -26.94045 -25.04018 -23.05909 -22.49745 -21.92416 -21.44718 -20.63488 -18.27221 -17.98306 -17.32656 -16.99114 -16.62862 -16.36982 -15.98650 -15.53915 -15.19775 -14.74506 -14.56209 -14.35788 -13.89885 -13.69506 -13.34249 -13.15566 -13.00652 -12.78972 -12.64919 -12.61197 -12.47036 -12.28615 -12.03982 -12.03019 -11.84194 -11.70422 -11.55623 -11.44385 -11.29263 -10.91411 -10.68469 -10.45876 -10.02849 -8.53896 -7.79291 -5.45029 1.45122 1.47509 1.53776 1.71231 2.28263 2.50275 3.15116 3.41485 3.51444 3.80011 3.94492 4.05310 4.18450 4.27477 4.32126 4.43190 4.47174 4.55828 4.60547 4.70489 4.73269 4.76888 4.77452 4.87416 4.94395 4.96159 5.06647 5.08003 5.11118 5.16440 5.32215 5.36564 5.43167 5.47659 5.52774 5.55025 5.58925 5.68692 5.85787 6.44951 6.64401 7.15248 7.34203 7.86333 8.35657 9.11127 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.020577 B = 0.003810 C = 0.003447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.439293 B = 7347.907216 C = 8121.465529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.083 4.083 3 C -0.141 4.141 4 C -0.129 4.129 5 C 0.501 3.499 6 O -0.586 6.586 7 N -0.720 5.720 8 C 0.134 3.866 9 C -0.120 4.120 10 C 0.147 3.853 11 N -0.569 5.569 12 C -0.259 4.259 13 H 0.063 0.937 14 C -0.037 4.037 15 N -0.915 5.915 16 Si 0.952 3.048 17 H -0.277 1.277 18 H -0.297 1.297 19 H -0.276 1.276 20 C 0.102 3.898 21 C -0.180 4.180 22 C -0.223 4.223 23 H 0.055 0.945 24 H 0.043 0.957 25 H 0.062 0.938 26 H 0.053 0.947 27 H 0.063 0.937 28 H 0.058 0.942 29 H 0.068 0.932 30 H 0.118 0.882 31 H 0.114 0.886 32 H 0.414 0.586 33 H 0.039 0.961 34 H 0.057 0.943 35 H 0.070 0.930 36 H 0.053 0.947 37 H 0.067 0.933 38 H 0.028 0.972 39 H 0.250 0.750 40 H 0.114 0.886 41 H 0.074 0.926 42 H 0.113 0.887 43 H 0.101 0.899 44 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.082 18.621 1.934 18.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.102 4.102 3 C -0.198 4.198 4 C -0.169 4.169 5 C 0.289 3.711 6 O -0.466 6.466 7 N -0.372 5.372 8 C 0.009 3.991 9 C -0.160 4.160 10 C 0.021 3.979 11 N -0.287 5.287 12 C -0.389 4.389 13 H 0.081 0.919 14 C -0.235 4.235 15 N -0.559 5.559 16 Si 0.780 3.220 17 H -0.202 1.202 18 H -0.223 1.223 19 H -0.201 1.201 20 C -0.006 4.006 21 C -0.218 4.218 22 C -0.264 4.264 23 H 0.074 0.926 24 H 0.062 0.938 25 H 0.081 0.919 26 H 0.072 0.928 27 H 0.082 0.918 28 H 0.077 0.923 29 H 0.087 0.913 30 H 0.136 0.864 31 H 0.132 0.868 32 H 0.251 0.749 33 H 0.058 0.942 34 H 0.075 0.925 35 H 0.089 0.911 36 H 0.072 0.928 37 H 0.085 0.915 38 H 0.047 0.953 39 H 0.059 0.941 40 H 0.132 0.868 41 H 0.092 0.908 42 H 0.131 0.869 43 H 0.119 0.881 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.487 18.188 1.123 18.391 hybrid contribution 1.058 -0.874 -0.209 1.389 sum -1.428 17.313 0.913 17.396 Atomic orbital electron populations 1.21927 0.95517 1.01641 1.01838 1.20867 0.96082 0.96686 0.96608 1.21806 1.01397 0.93955 1.02653 1.21837 1.04309 0.89034 1.01677 1.21537 0.78341 0.89888 0.81325 1.90655 1.41898 1.79160 1.34923 1.46078 1.57603 1.09288 1.24217 1.21056 0.99126 0.80773 0.98172 1.22065 1.00766 0.97169 0.96019 1.20764 0.95471 0.89798 0.91864 1.43621 1.14775 1.60166 1.10103 1.19223 0.92278 1.29545 0.97846 0.91939 1.25767 1.01188 0.97301 0.99210 1.70173 1.34632 1.43341 1.07774 0.85592 0.81821 0.78005 0.76603 1.20227 1.22305 1.20141 1.21559 0.96849 0.93621 0.88605 1.23037 0.97849 1.05235 0.95645 1.23281 0.98286 0.99193 1.05603 0.92610 0.93790 0.91915 0.92828 0.91786 0.92300 0.91330 0.86372 0.86762 0.74923 0.94227 0.92504 0.91133 0.92834 0.91510 0.95347 0.94116 0.86803 0.90780 0.86926 0.88087 0.92988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.12 8.93 71.98 0.64 -2.48 16 2 C -0.08 -1.55 2.57 -10.79 -0.03 -1.58 16 3 C -0.14 -1.76 9.19 71.98 0.66 -1.10 16 4 C -0.13 -2.19 5.18 29.85 0.15 -2.04 16 5 C 0.50 13.53 7.55 87.66 0.66 14.19 16 6 O -0.59 -21.23 13.97 -3.04 -0.04 -21.27 16 7 N -0.72 -18.66 5.56 -463.05 -2.57 -21.24 16 8 C 0.13 4.43 5.67 86.38 0.49 4.92 16 9 C -0.12 -4.26 5.65 30.60 0.17 -4.09 16 10 C 0.15 6.66 5.34 86.38 0.46 7.12 16 11 N -0.57 -27.26 2.78 -678.05 -1.88 -29.15 16 12 C -0.26 -13.65 8.63 84.03 0.73 -12.93 16 13 H 0.06 3.28 6.55 -2.91 -0.02 3.26 16 14 C -0.04 -2.03 4.96 84.86 0.42 -1.61 16 15 N -0.92 -53.16 11.33 21.65 0.25 -52.92 16 16 Si 0.95 43.96 29.61 68.60 2.03 45.99 16 17 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 18 H -0.30 -13.93 7.11 99.48 0.71 -13.23 16 19 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 20 C 0.10 4.10 6.56 44.99 0.30 4.40 16 21 C -0.18 -6.60 9.80 30.62 0.30 -6.30 16 22 C -0.22 -8.78 10.36 30.62 0.32 -8.47 16 23 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 24 H 0.04 1.20 5.95 -2.39 -0.01 1.19 16 25 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 26 H 0.05 1.24 7.96 -2.39 -0.02 1.23 16 27 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 28 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.12 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.41 8.05 8.47 -92.71 -0.79 7.27 16 33 H 0.04 1.52 8.14 -2.38 -0.02 1.50 16 34 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 35 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 36 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 37 H 0.07 3.55 5.35 -2.39 -0.01 3.54 16 38 H 0.03 1.24 8.07 -2.39 -0.02 1.22 16 39 H 0.25 14.19 8.32 -92.71 -0.77 13.42 16 40 H 0.11 3.93 8.14 -2.39 -0.02 3.91 16 41 H 0.07 3.08 6.37 -2.39 -0.02 3.06 16 42 H 0.11 3.28 8.14 -2.39 -0.02 3.26 16 43 H 0.10 3.31 8.14 -2.39 -0.02 3.29 16 44 H 0.05 2.46 8.14 -2.39 -0.02 2.44 16 Total: -1.00 -66.66 354.12 3.23 -63.43 By element: Atomic # 1 Polarization: 24.95 SS G_CDS: 0.17 Total: 25.12 kcal Atomic # 6 Polarization: -15.25 SS G_CDS: 5.28 Total: -9.97 kcal Atomic # 7 Polarization: -99.09 SS G_CDS: -4.21 Total: -103.30 kcal Atomic # 8 Polarization: -21.23 SS G_CDS: -0.04 Total: -21.27 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Total: -66.66 3.23 -63.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731328613.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.473 kcal (2) G-P(sol) polarization free energy of solvation -66.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds