Wall clock time and date at job start Mon Mar 30 2020 00:33:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47359 * 2 1 4 4 C 1.53007 * 109.46711 * 119.99751 * 2 1 3 5 5 C 1.50696 * 109.46728 * 175.00113 * 4 2 1 6 6 O 1.21283 * 120.00202 * 0.02562 * 5 4 2 7 7 N 1.34780 * 119.99866 * 180.02562 * 5 4 2 8 8 C 1.46496 * 120.00083 * 180.02562 * 7 5 4 9 9 H 1.09004 * 109.47374 * 324.99398 * 8 7 5 10 10 C 1.53000 * 109.47631 * 84.99376 * 8 7 5 11 11 C 1.52997 * 109.47060 * 59.99933 * 10 8 7 12 12 C 1.52999 * 109.47317 * 59.99960 * 11 10 8 13 13 C 1.53005 * 109.47159 * 300.00546 * 12 11 10 14 14 H 1.09002 * 109.46935 * 299.99411 * 13 12 11 15 15 N 1.46500 * 109.47094 * 179.97438 * 13 12 11 16 16 C 1.36943 * 120.00134 * 84.99505 * 15 13 12 17 17 H 1.08007 * 119.99758 * 0.02562 * 16 15 13 18 18 C 1.38802 * 120.00199 * 179.97438 * 16 15 13 19 19 N 1.31619 * 120.00039 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00111 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.46822 * 90.00721 * 20 18 16 22 22 H 1.48498 * 109.47357 * 210.00415 * 20 18 16 23 23 H 1.48500 * 109.47327 * 330.00670 * 20 18 16 24 24 C 1.52997 * 109.47452 * 59.99536 * 13 12 11 25 25 H 1.08994 * 109.47129 * 300.00728 * 1 2 3 26 26 H 1.09006 * 109.46761 * 60.00662 * 1 2 3 27 27 H 1.08999 * 109.47326 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47134 * 239.99825 * 2 1 3 29 29 H 1.08997 * 109.47376 * 179.97438 * 3 2 1 30 30 H 1.09001 * 109.47040 * 299.99698 * 3 2 1 31 31 H 1.08999 * 109.46924 * 59.99370 * 3 2 1 32 32 H 1.09000 * 109.46831 * 55.00320 * 4 2 1 33 33 H 1.08997 * 109.47081 * 295.00143 * 4 2 1 34 34 H 0.97000 * 119.99750 * 359.97438 * 7 5 4 35 35 H 1.09002 * 109.47398 * 180.02562 * 10 8 7 36 36 H 1.09001 * 109.47194 * 300.00282 * 10 8 7 37 37 H 1.08996 * 109.47853 * 180.02562 * 11 10 8 38 38 H 1.09002 * 109.47153 * 300.00319 * 11 10 8 39 39 H 1.09000 * 109.47486 * 180.02562 * 12 11 10 40 40 H 1.09002 * 109.46716 * 60.00091 * 12 11 10 41 41 H 0.97004 * 120.00223 * 264.99822 * 15 13 12 42 42 H 0.97006 * 119.99987 * 180.02562 * 19 18 16 43 43 H 1.08993 * 109.47194 * 179.97438 * 24 13 12 44 44 H 1.09002 * 109.46695 * 59.99734 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 1.2494 5 6 3.5418 -0.8294 1.1890 6 8 4.1450 -0.3740 0.2405 7 7 4.2148 -1.4322 2.1892 8 6 5.6748 -1.5368 2.1309 9 1 5.9878 -1.6798 1.0966 10 6 6.3006 -0.2532 2.6802 11 6 5.8613 -0.0525 4.1320 12 6 6.3211 -1.2447 4.9735 13 6 5.6954 -2.5284 4.4240 14 1 4.6090 -2.4505 4.4675 15 7 6.1361 -3.6700 5.2294 16 6 5.4694 -3.9937 6.3809 17 1 4.6184 -3.4076 6.6952 18 6 5.8867 -5.0757 7.1437 19 7 6.9235 -5.7903 6.7606 20 14 4.9777 -5.5168 8.7149 21 1 3.8867 -6.4749 8.4032 22 1 5.9234 -6.1391 9.6759 23 1 4.4002 -4.2871 9.3146 24 6 6.1347 -2.7291 2.9723 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 3.1300 1.4425 0.0005 30 1 1.6768 1.9563 -0.8900 31 1 1.6767 1.9563 0.8899 32 1 1.6053 -1.7198 1.2952 33 1 1.7515 -0.1583 2.1370 34 1 3.7323 -1.7960 2.9480 35 1 7.3869 -0.3309 2.6364 36 1 5.9730 0.5962 2.0808 37 1 6.3067 0.8621 4.5233 38 1 4.7749 0.0254 4.1754 39 1 6.0078 -1.1020 6.0076 40 1 7.4074 -1.3226 4.9300 41 1 6.9003 -4.1966 4.9470 42 1 7.2148 -6.5467 7.2935 43 1 5.6893 -3.6437 2.5811 44 1 7.2210 -2.8069 2.9289 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731682878.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:33:40 Heat of formation + Delta-G solvation = -60.922398 kcal Electronic energy + Delta-G solvation = -21286.841542 eV Core-core repulsion = 18237.903252 eV Total energy + Delta-G solvation = -3048.938290 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.16664 -38.18945 -35.63419 -34.40770 -33.02840 -31.17159 -30.01341 -28.08761 -27.56237 -27.19611 -23.75752 -22.21394 -21.53582 -20.91535 -19.90880 -18.78237 -17.35964 -16.95676 -15.87751 -15.41322 -15.15132 -14.73923 -14.41035 -13.97697 -13.91992 -13.65813 -13.40489 -13.05525 -12.62275 -12.44750 -12.29494 -12.13753 -11.91694 -11.80711 -11.71116 -11.22880 -11.01537 -10.96597 -10.90654 -10.79904 -10.77248 -10.37827 -10.20740 -10.17357 -9.75176 -9.57526 -9.53015 -8.93365 -8.80128 -6.99355 -5.80007 -3.09044 2.76279 3.34252 3.40464 3.45754 3.47539 4.54502 4.63864 4.74978 4.79836 5.03795 5.11395 5.18735 5.23053 5.38241 5.47474 5.48597 5.52053 5.56647 5.58757 5.69449 5.76253 5.76864 5.85835 5.87786 5.97785 6.00777 6.06624 6.11343 6.23892 6.26226 6.29170 6.36098 6.50068 6.56968 6.71210 6.73340 6.93248 7.07593 7.65599 7.68026 8.37326 8.38511 9.49641 10.07348 10.41709 11.42586 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.023469 B = 0.004148 C = 0.003797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.781682 B = 6747.832119 C = 7371.876850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.080 4.080 3 C -0.153 4.153 4 C -0.140 4.140 5 C 0.512 3.488 6 O -0.546 6.546 7 N -0.719 5.719 8 C 0.151 3.849 9 H 0.082 0.918 10 C -0.127 4.127 11 C -0.114 4.114 12 C -0.137 4.137 13 C 0.181 3.819 14 H 0.041 0.959 15 N -0.725 5.725 16 C -0.240 4.240 17 H 0.070 0.930 18 C -0.013 4.013 19 N -0.932 5.932 20 Si 0.905 3.095 21 H -0.290 1.290 22 H -0.292 1.292 23 H -0.282 1.282 24 C -0.133 4.133 25 H 0.054 0.946 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.049 0.951 31 H 0.046 0.954 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.402 0.598 35 H 0.068 0.932 36 H 0.060 0.940 37 H 0.052 0.948 38 H 0.055 0.945 39 H 0.060 0.940 40 H 0.055 0.945 41 H 0.384 0.616 42 H 0.255 0.745 43 H 0.068 0.932 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.662 11.962 -11.336 18.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.098 4.098 3 C -0.210 4.210 4 C -0.180 4.180 5 C 0.299 3.701 6 O -0.424 6.424 7 N -0.372 5.372 8 C 0.046 3.954 9 H 0.100 0.900 10 C -0.165 4.165 11 C -0.153 4.153 12 C -0.177 4.177 13 C 0.071 3.929 14 H 0.059 0.941 15 N -0.365 5.365 16 C -0.371 4.371 17 H 0.088 0.912 18 C -0.209 4.209 19 N -0.580 5.580 20 Si 0.736 3.264 21 H -0.217 1.217 22 H -0.218 1.218 23 H -0.208 1.208 24 C -0.172 4.172 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.095 0.905 29 H 0.094 0.906 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.110 0.890 33 H 0.110 0.890 34 H 0.238 0.762 35 H 0.087 0.913 36 H 0.078 0.922 37 H 0.071 0.929 38 H 0.073 0.927 39 H 0.079 0.921 40 H 0.074 0.926 41 H 0.217 0.783 42 H 0.065 0.935 43 H 0.087 0.913 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -8.330 12.237 -11.847 18.960 hybrid contribution -0.400 -0.676 1.356 1.567 sum -8.729 11.562 -10.491 17.886 Atomic orbital electron populations 1.21871 0.95158 1.01705 1.01834 1.20840 0.94860 0.96870 0.97276 1.21956 1.03255 0.95013 1.00779 1.21800 0.92450 1.03002 1.00793 1.20676 0.90026 0.77322 0.82116 1.90634 1.70517 1.47707 1.33561 1.46274 1.08021 1.59264 1.23606 1.20923 0.79239 0.95268 0.99961 0.89964 1.21885 1.00490 0.97470 0.96660 1.21495 1.00507 0.98520 0.94758 1.22284 1.00844 0.95248 0.99331 1.20143 0.96238 0.87950 0.88576 0.94081 1.42432 1.36736 1.31720 1.25653 1.19220 1.09251 1.09584 0.99022 0.91241 1.24736 0.98400 0.98451 0.99296 1.69660 1.27322 1.21047 1.40021 0.86219 0.78738 0.78121 0.83274 1.21734 1.21788 1.20782 1.22123 1.01951 0.96689 0.96458 0.92670 0.92557 0.92680 0.90532 0.90594 0.93192 0.93472 0.88967 0.89012 0.76155 0.91296 0.92174 0.92941 0.92658 0.92123 0.92590 0.78256 0.93496 0.91301 0.90646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.19 37.16 0.34 -0.81 16 2 C -0.08 -0.77 2.57 -90.62 -0.23 -1.01 16 3 C -0.15 -1.57 8.93 37.16 0.33 -1.24 16 4 C -0.14 -1.36 5.17 -27.88 -0.14 -1.51 16 5 C 0.51 6.58 7.51 -10.99 -0.08 6.50 16 6 O -0.55 -8.63 13.63 5.55 0.08 -8.56 16 7 N -0.72 -9.14 4.23 -53.81 -0.23 -9.37 16 8 C 0.15 2.09 2.78 -67.93 -0.19 1.90 16 9 H 0.08 1.20 7.58 -51.93 -0.39 0.80 16 10 C -0.13 -1.70 5.60 -26.73 -0.15 -1.85 16 11 C -0.11 -1.59 5.77 -26.73 -0.15 -1.75 16 12 C -0.14 -2.34 5.50 -26.73 -0.15 -2.48 16 13 C 0.18 3.33 2.60 -67.93 -0.18 3.15 16 14 H 0.04 0.75 6.44 -51.93 -0.33 0.41 16 15 N -0.72 -17.40 5.12 -53.42 -0.27 -17.67 16 16 C -0.24 -6.42 9.93 -15.06 -0.15 -6.57 16 17 H 0.07 1.80 7.83 -52.48 -0.41 1.39 16 18 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 19 N -0.93 -27.68 13.06 55.49 0.72 -26.96 16 20 Si 0.91 21.93 29.55 -169.99 -5.02 16.91 16 21 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 22 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 23 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 24 C -0.13 -2.09 5.08 -26.73 -0.14 -2.23 16 25 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 26 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 28 H 0.08 0.84 7.95 -51.93 -0.41 0.43 16 29 H 0.08 0.96 5.95 -51.93 -0.31 0.65 16 30 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.40 4.83 6.87 -40.82 -0.28 4.55 16 35 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.05 0.75 7.60 -51.93 -0.39 0.35 16 39 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 40 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.38 9.90 7.80 -40.82 -0.32 9.58 16 42 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 43 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 44 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 LS Contribution 343.37 15.07 5.17 5.17 Total: -1.00 -30.17 343.37 -8.44 -38.62 By element: Atomic # 1 Polarization: 18.10 SS G_CDS: -7.91 Total: 10.20 kcal Atomic # 6 Polarization: -7.36 SS G_CDS: -0.98 Total: -8.34 kcal Atomic # 7 Polarization: -54.22 SS G_CDS: 0.22 Total: -54.00 kcal Atomic # 8 Polarization: -8.63 SS G_CDS: 0.08 Total: -8.56 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -30.17 -8.44 -38.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731682878.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.307 kcal (2) G-P(sol) polarization free energy of solvation -30.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds