Wall clock time and date at job start Mon Mar 30 2020 00:33:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47359 * 2 1 4 4 C 1.53007 * 109.46711 * 119.99751 * 2 1 3 5 5 C 1.50696 * 109.46728 * 175.00113 * 4 2 1 6 6 O 1.21283 * 120.00202 * 0.02562 * 5 4 2 7 7 N 1.34780 * 119.99866 * 180.02562 * 5 4 2 8 8 C 1.46496 * 120.00083 * 180.02562 * 7 5 4 9 9 H 1.09004 * 109.47374 * 324.99398 * 8 7 5 10 10 C 1.53000 * 109.47631 * 84.99376 * 8 7 5 11 11 C 1.52997 * 109.47060 * 59.99933 * 10 8 7 12 12 C 1.52999 * 109.47317 * 59.99960 * 11 10 8 13 13 C 1.53005 * 109.47159 * 300.00546 * 12 11 10 14 14 H 1.09002 * 109.46935 * 299.99411 * 13 12 11 15 15 N 1.46500 * 109.47094 * 179.97438 * 13 12 11 16 16 C 1.36943 * 120.00134 * 84.99505 * 15 13 12 17 17 H 1.08007 * 119.99758 * 0.02562 * 16 15 13 18 18 C 1.38802 * 120.00199 * 179.97438 * 16 15 13 19 19 N 1.31619 * 120.00039 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00111 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.46822 * 90.00721 * 20 18 16 22 22 H 1.48498 * 109.47357 * 210.00415 * 20 18 16 23 23 H 1.48500 * 109.47327 * 330.00670 * 20 18 16 24 24 C 1.52997 * 109.47452 * 59.99536 * 13 12 11 25 25 H 1.08994 * 109.47129 * 300.00728 * 1 2 3 26 26 H 1.09006 * 109.46761 * 60.00662 * 1 2 3 27 27 H 1.08999 * 109.47326 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47134 * 239.99825 * 2 1 3 29 29 H 1.08997 * 109.47376 * 179.97438 * 3 2 1 30 30 H 1.09001 * 109.47040 * 299.99698 * 3 2 1 31 31 H 1.08999 * 109.46924 * 59.99370 * 3 2 1 32 32 H 1.09000 * 109.46831 * 55.00320 * 4 2 1 33 33 H 1.08997 * 109.47081 * 295.00143 * 4 2 1 34 34 H 0.97000 * 119.99750 * 359.97438 * 7 5 4 35 35 H 1.09002 * 109.47398 * 180.02562 * 10 8 7 36 36 H 1.09001 * 109.47194 * 300.00282 * 10 8 7 37 37 H 1.08996 * 109.47853 * 180.02562 * 11 10 8 38 38 H 1.09002 * 109.47153 * 300.00319 * 11 10 8 39 39 H 1.09000 * 109.47486 * 180.02562 * 12 11 10 40 40 H 1.09002 * 109.46716 * 60.00091 * 12 11 10 41 41 H 0.97004 * 120.00223 * 264.99822 * 15 13 12 42 42 H 0.97006 * 119.99987 * 180.02562 * 19 18 16 43 43 H 1.08993 * 109.47194 * 179.97438 * 24 13 12 44 44 H 1.09002 * 109.46695 * 59.99734 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 1.2494 5 6 3.5418 -0.8294 1.1890 6 8 4.1450 -0.3740 0.2405 7 7 4.2148 -1.4322 2.1892 8 6 5.6748 -1.5368 2.1309 9 1 5.9878 -1.6798 1.0966 10 6 6.3006 -0.2532 2.6802 11 6 5.8613 -0.0525 4.1320 12 6 6.3211 -1.2447 4.9735 13 6 5.6954 -2.5284 4.4240 14 1 4.6090 -2.4505 4.4675 15 7 6.1361 -3.6700 5.2294 16 6 5.4694 -3.9937 6.3809 17 1 4.6184 -3.4076 6.6952 18 6 5.8867 -5.0757 7.1437 19 7 6.9235 -5.7903 6.7606 20 14 4.9777 -5.5168 8.7149 21 1 3.8867 -6.4749 8.4032 22 1 5.9234 -6.1391 9.6759 23 1 4.4002 -4.2871 9.3146 24 6 6.1347 -2.7291 2.9723 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 3.1300 1.4425 0.0005 30 1 1.6768 1.9563 -0.8900 31 1 1.6767 1.9563 0.8899 32 1 1.6053 -1.7198 1.2952 33 1 1.7515 -0.1583 2.1370 34 1 3.7323 -1.7960 2.9480 35 1 7.3869 -0.3309 2.6364 36 1 5.9730 0.5962 2.0808 37 1 6.3067 0.8621 4.5233 38 1 4.7749 0.0254 4.1754 39 1 6.0078 -1.1020 6.0076 40 1 7.4074 -1.3226 4.9300 41 1 6.9003 -4.1966 4.9470 42 1 7.2148 -6.5467 7.2935 43 1 5.6893 -3.6437 2.5811 44 1 7.2210 -2.8069 2.9289 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731682878.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:33:39 Heat of formation + Delta-G solvation = -78.998263 kcal Electronic energy + Delta-G solvation = -21287.625370 eV Core-core repulsion = 18237.903252 eV Total energy + Delta-G solvation = -3049.722118 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.26621 -39.41445 -36.57744 -35.95414 -34.38867 -32.91764 -31.19725 -29.62112 -28.54779 -27.90758 -25.67492 -23.44086 -22.71558 -22.21131 -20.74723 -20.06604 -19.13645 -18.12236 -16.99732 -16.72818 -16.36022 -16.11521 -15.71878 -15.25982 -15.02968 -14.89173 -14.70856 -14.52312 -13.90298 -13.55957 -13.34680 -13.04641 -13.01400 -12.92731 -12.86185 -12.80071 -12.68341 -12.21720 -12.05457 -12.01574 -11.94102 -11.71291 -11.56648 -11.53732 -11.44455 -10.98840 -10.82940 -10.60882 -9.92931 -8.97597 -7.91590 -5.19641 1.49372 1.50223 1.58422 1.76412 2.33623 2.58099 3.42099 3.66093 3.84533 3.89894 3.93803 3.97989 4.08048 4.30992 4.32104 4.37479 4.43907 4.56747 4.67831 4.71806 4.74877 4.75891 4.79948 4.82857 4.88930 4.97976 5.08275 5.10391 5.17474 5.19464 5.23919 5.33138 5.38218 5.47913 5.52087 5.53926 5.56040 5.61444 5.70967 6.30708 6.66238 7.36622 7.36882 8.13623 8.35672 9.32066 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.023469 B = 0.004148 C = 0.003797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.781682 B = 6747.832119 C = 7371.876850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.080 4.080 3 C -0.150 4.150 4 C -0.136 4.136 5 C 0.510 3.490 6 O -0.578 6.578 7 N -0.717 5.717 8 C 0.159 3.841 9 H 0.077 0.923 10 C -0.120 4.120 11 C -0.103 4.103 12 C -0.128 4.128 13 C 0.178 3.822 14 H 0.049 0.951 15 N -0.738 5.738 16 C -0.234 4.234 17 H 0.078 0.922 18 C -0.077 4.077 19 N -0.971 5.971 20 Si 0.968 3.032 21 H -0.288 1.288 22 H -0.300 1.300 23 H -0.269 1.269 24 C -0.121 4.121 25 H 0.064 0.936 26 H 0.059 0.941 27 H 0.061 0.939 28 H 0.058 0.942 29 H 0.049 0.951 30 H 0.055 0.945 31 H 0.057 0.943 32 H 0.109 0.891 33 H 0.111 0.889 34 H 0.408 0.592 35 H 0.074 0.926 36 H 0.061 0.939 37 H 0.066 0.934 38 H 0.064 0.936 39 H 0.041 0.959 40 H 0.045 0.955 41 H 0.371 0.629 42 H 0.249 0.751 43 H 0.060 0.940 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.533 13.243 -11.273 20.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.099 4.099 3 C -0.208 4.208 4 C -0.176 4.176 5 C 0.298 3.702 6 O -0.458 6.458 7 N -0.369 5.369 8 C 0.054 3.946 9 H 0.095 0.905 10 C -0.159 4.159 11 C -0.141 4.141 12 C -0.168 4.168 13 C 0.070 3.930 14 H 0.067 0.933 15 N -0.378 5.378 16 C -0.366 4.366 17 H 0.096 0.904 18 C -0.269 4.269 19 N -0.622 5.622 20 Si 0.798 3.202 21 H -0.215 1.215 22 H -0.227 1.227 23 H -0.194 1.194 24 C -0.160 4.160 25 H 0.083 0.917 26 H 0.078 0.922 27 H 0.080 0.920 28 H 0.076 0.924 29 H 0.068 0.932 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.127 0.873 33 H 0.129 0.871 34 H 0.244 0.756 35 H 0.092 0.908 36 H 0.080 0.920 37 H 0.085 0.915 38 H 0.082 0.918 39 H 0.060 0.940 40 H 0.064 0.936 41 H 0.203 0.797 42 H 0.058 0.942 43 H 0.079 0.921 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -10.241 13.565 -11.794 20.688 hybrid contribution 0.185 -1.012 1.262 1.629 sum -10.056 12.552 -10.532 19.225 Atomic orbital electron populations 1.21824 0.93304 1.02406 1.02515 1.20834 0.96311 0.96191 0.96545 1.21914 1.01486 0.95746 1.01621 1.21856 0.89820 1.04323 1.01557 1.21248 0.91308 0.76352 0.81292 1.90631 1.71443 1.48986 1.34719 1.46243 1.07469 1.59282 1.23911 1.20747 0.80185 0.94577 0.99141 0.90464 1.21829 1.00824 0.97056 0.96171 1.21395 1.01071 0.97401 0.94268 1.22111 1.00063 0.95848 0.98772 1.20370 0.96650 0.86712 0.89318 0.93346 1.42661 1.36248 1.33151 1.25695 1.19620 1.08818 1.08792 0.99363 0.90413 1.25509 0.99651 0.99117 1.02622 1.69818 1.29296 1.21777 1.41344 0.85208 0.77316 0.78055 0.79611 1.21472 1.22704 1.19362 1.21958 1.01801 0.97312 0.94893 0.91726 0.92175 0.91986 0.92358 0.93218 0.92637 0.92380 0.87292 0.87097 0.75565 0.90781 0.92005 0.91529 0.91773 0.93985 0.93588 0.79730 0.94216 0.92076 0.90840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 9.19 71.98 0.66 -1.18 16 2 C -0.08 -1.41 2.57 -10.79 -0.03 -1.43 16 3 C -0.15 -2.87 8.93 71.98 0.64 -2.22 16 4 C -0.14 -2.30 5.17 29.85 0.15 -2.15 16 5 C 0.51 12.28 7.51 87.66 0.66 12.94 16 6 O -0.58 -17.84 13.63 -3.04 -0.04 -17.88 16 7 N -0.72 -16.94 4.23 -442.53 -1.87 -18.81 16 8 C 0.16 4.19 2.78 44.99 0.13 4.32 16 9 H 0.08 2.18 7.58 -2.39 -0.02 2.16 16 10 C -0.12 -3.01 5.60 30.59 0.17 -2.83 16 11 C -0.10 -2.64 5.77 30.59 0.18 -2.46 16 12 C -0.13 -4.23 5.50 30.60 0.17 -4.06 16 13 C 0.18 6.38 2.60 44.99 0.12 6.49 16 14 H 0.05 1.68 6.44 -2.39 -0.02 1.66 16 15 N -0.74 -35.48 5.12 -322.93 -1.65 -37.13 16 16 C -0.23 -12.45 9.93 84.03 0.83 -11.62 16 17 H 0.08 3.93 7.83 -2.91 -0.02 3.91 16 18 C -0.08 -4.31 5.50 84.86 0.47 -3.85 16 19 N -0.97 -58.65 13.06 21.65 0.28 -58.37 16 20 Si 0.97 45.10 29.55 68.60 2.03 47.13 16 21 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 22 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16 23 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 24 C -0.12 -3.71 5.08 30.59 0.16 -3.55 16 25 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 26 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 27 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.06 1.24 7.95 -2.39 -0.02 1.22 16 29 H 0.05 1.22 5.95 -2.39 -0.01 1.21 16 30 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.41 8.87 6.87 -92.71 -0.64 8.24 16 35 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.06 1.55 7.60 -2.39 -0.02 1.53 16 39 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 40 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 41 H 0.37 19.49 7.80 -92.71 -0.72 18.77 16 42 H 0.25 14.68 8.31 -92.70 -0.77 13.91 16 43 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 44 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 Total: -1.00 -64.65 343.37 2.66 -61.99 By element: Atomic # 1 Polarization: 35.07 SS G_CDS: -0.39 Total: 34.68 kcal Atomic # 6 Polarization: -15.91 SS G_CDS: 4.30 Total: -11.61 kcal Atomic # 7 Polarization: -111.07 SS G_CDS: -3.24 Total: -114.31 kcal Atomic # 8 Polarization: -17.84 SS G_CDS: -0.04 Total: -17.88 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.13 kcal Total: -64.65 2.66 -61.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731682878.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.010 kcal (2) G-P(sol) polarization free energy of solvation -64.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds