Wall clock time and date at job start Mon Mar 30 2020 00:27:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47455 * 2 1 4 4 C 1.52991 * 109.47306 * 179.97438 * 3 2 1 5 5 C 1.50703 * 109.47197 * 179.97438 * 4 3 2 6 6 O 1.21276 * 119.99955 * 0.02562 * 5 4 3 7 7 N 1.34773 * 120.00024 * 180.02562 * 5 4 3 8 8 C 1.46924 * 120.63336 * 359.97438 * 7 5 4 9 9 C 1.53196 * 108.77623 * 126.41444 * 8 7 5 10 10 C 1.53039 * 109.30922 * 54.63603 * 9 8 7 11 11 C 1.53035 * 109.54222 * 298.63568 * 10 9 8 12 12 H 1.09003 * 109.49963 * 301.38308 * 11 10 9 13 13 N 1.46501 * 109.50118 * 181.31900 * 11 10 9 14 14 C 1.46500 * 119.99430 * 300.00310 * 13 11 10 15 15 C 1.36932 * 120.00268 * 120.00034 * 13 11 10 16 16 H 1.08005 * 119.99832 * 340.37210 * 15 13 11 17 17 C 1.38805 * 120.00212 * 160.37451 * 15 13 11 18 18 N 1.31624 * 120.00475 * 157.35616 * 17 15 13 19 19 Si 1.86805 * 119.99975 * 337.35785 * 17 15 13 20 20 H 1.48508 * 109.46911 * 86.21899 * 19 17 15 21 21 H 1.48494 * 109.47161 * 206.21843 * 19 17 15 22 22 H 1.48497 * 109.47309 * 326.22231 * 19 17 15 23 23 C 1.46924 * 120.63222 * 180.02562 * 7 5 4 24 24 H 1.09002 * 109.47335 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.47132 * 299.99785 * 1 2 3 26 26 H 1.08996 * 109.47105 * 60.00342 * 1 2 3 27 27 H 1.09002 * 109.46849 * 239.99535 * 2 1 3 28 28 H 1.09005 * 109.46742 * 120.00397 * 2 1 3 29 29 H 1.09003 * 109.47067 * 59.99570 * 3 2 1 30 30 H 1.09006 * 109.47073 * 300.00313 * 3 2 1 31 31 H 1.09003 * 109.47400 * 59.99785 * 4 3 2 32 32 H 1.08996 * 109.47363 * 300.00143 * 4 3 2 33 33 H 1.09005 * 109.58357 * 6.62662 * 8 7 5 34 34 H 1.08997 * 109.59429 * 246.20374 * 8 7 5 35 35 H 1.09003 * 109.49354 * 294.68909 * 9 8 7 36 36 H 1.08999 * 109.49621 * 174.59355 * 9 8 7 37 37 H 1.09002 * 109.45753 * 178.61475 * 10 9 8 38 38 H 1.09001 * 109.45779 * 58.66048 * 10 9 8 39 39 H 1.09004 * 109.46905 * 267.74925 * 14 13 11 40 40 H 1.09003 * 109.46816 * 147.75861 * 14 13 11 41 41 H 1.09001 * 109.47735 * 27.75369 * 14 13 11 42 42 H 0.97001 * 120.00473 * 180.02562 * 18 17 15 43 43 H 1.09000 * 109.59020 * 113.79554 * 23 7 5 44 44 H 1.09002 * 109.58720 * 353.37520 * 23 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.0724 2.8632 0.0000 6 8 3.2843 3.7850 -0.0004 7 7 5.3974 3.1094 -0.0001 8 6 6.3644 2.0033 0.0010 9 6 7.3373 2.1977 -1.1664 10 6 7.9716 3.5871 -1.0705 11 6 6.8805 4.6558 -1.1679 12 1 6.3449 4.5440 -2.1107 13 7 7.4918 5.9858 -1.1077 14 6 8.2701 6.3814 0.0687 15 6 7.3357 6.8590 -2.1508 16 1 7.0521 6.4906 -3.1256 17 6 7.5420 8.2177 -1.9554 18 7 7.8345 8.9928 -2.9782 19 14 7.4047 8.9462 -0.2408 20 1 8.7094 8.8189 0.4571 21 1 7.0347 10.3808 -0.3407 22 1 6.3610 8.2179 0.5244 23 6 5.9025 4.4891 -0.0002 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8901 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 3.9337 0.9284 -0.8891 32 1 3.9330 0.9287 0.8908 33 1 5.8369 1.0567 -0.1168 34 1 6.9169 2.0016 0.9406 35 1 6.7970 2.1087 -2.1089 36 1 8.1172 1.4376 -1.1204 37 1 8.6827 3.7187 -1.8860 38 1 8.4909 3.6842 -0.1170 39 1 7.6190 6.8869 0.7820 40 1 9.0698 7.0569 -0.2352 41 1 8.7006 5.4950 0.5346 42 1 7.9790 9.9422 -2.8416 43 1 6.4173 4.6899 0.9394 44 1 5.0702 5.1829 -0.1186 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731708306.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:27:48 Heat of formation + Delta-G solvation = -26.799534 kcal Electronic energy + Delta-G solvation = -21422.802103 eV Core-core repulsion = 18375.343492 eV Total energy + Delta-G solvation = -3047.458611 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.05668 -37.72215 -35.46670 -35.30574 -32.41162 -31.52268 -30.82345 -29.28870 -26.29016 -25.73048 -24.32846 -23.39225 -21.70167 -21.24145 -19.55447 -18.62329 -16.94928 -16.80579 -16.08131 -15.63645 -15.32346 -14.91286 -14.33352 -14.16080 -13.85511 -13.77961 -13.42594 -13.22762 -12.88888 -12.63643 -12.46262 -12.35388 -12.11518 -12.03029 -11.53276 -11.46902 -11.18896 -11.17034 -11.01876 -10.73260 -10.68467 -10.47891 -10.18183 -10.05763 -9.98512 -9.57267 -9.40803 -8.65359 -8.40260 -7.06195 -5.92896 -3.25520 2.81565 3.16253 3.36237 3.53189 3.55009 4.49103 4.56206 4.69594 4.76868 4.78180 5.00600 5.03980 5.13181 5.15185 5.22513 5.31722 5.36188 5.43729 5.51139 5.62020 5.64953 5.69174 5.73765 5.75793 5.85667 5.95724 5.99367 6.09120 6.10698 6.18587 6.24067 6.29645 6.37451 6.42058 6.62358 6.69008 6.82095 6.86669 7.62060 7.91347 8.31314 8.38978 8.93994 9.74041 10.03102 11.22960 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.026031 B = 0.004475 C = 0.004127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.403062 B = 6255.606668 C = 6782.355388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.124 4.124 3 C -0.106 4.106 4 C -0.138 4.138 5 C 0.508 3.492 6 O -0.542 6.542 7 N -0.610 5.610 8 C 0.108 3.892 9 C -0.132 4.132 10 C -0.133 4.133 11 C 0.170 3.830 12 H 0.074 0.926 13 N -0.601 5.601 14 C 0.096 3.904 15 C -0.263 4.263 16 H 0.089 0.911 17 C 0.023 3.977 18 N -0.907 5.907 19 Si 0.892 3.108 20 H -0.289 1.289 21 H -0.306 1.306 22 H -0.278 1.278 23 C 0.094 3.906 24 H 0.052 0.948 25 H 0.054 0.946 26 H 0.055 0.945 27 H 0.061 0.939 28 H 0.060 0.940 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.091 0.909 32 H 0.089 0.911 33 H 0.080 0.920 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.071 0.929 37 H 0.069 0.931 38 H 0.058 0.942 39 H 0.011 0.989 40 H 0.059 0.941 41 H 0.039 0.961 42 H 0.263 0.737 43 H 0.058 0.942 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.541 -20.461 7.527 22.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.162 4.162 3 C -0.144 4.144 4 C -0.178 4.178 5 C 0.296 3.704 6 O -0.419 6.419 7 N -0.344 5.344 8 C -0.016 4.016 9 C -0.170 4.170 10 C -0.173 4.173 11 C 0.062 3.938 12 H 0.092 0.908 13 N -0.324 5.324 14 C -0.049 4.049 15 C -0.390 4.390 16 H 0.107 0.893 17 C -0.176 4.176 18 N -0.551 5.551 19 Si 0.723 3.277 20 H -0.216 1.216 21 H -0.235 1.235 22 H -0.204 1.204 23 C -0.030 4.030 24 H 0.071 0.929 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.109 0.891 32 H 0.107 0.893 33 H 0.099 0.901 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.089 0.911 37 H 0.088 0.912 38 H 0.077 0.923 39 H 0.029 0.971 40 H 0.077 0.923 41 H 0.057 0.943 42 H 0.072 0.928 43 H 0.076 0.924 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -5.915 -19.761 7.452 21.932 hybrid contribution 0.078 0.564 1.021 1.169 sum -5.836 -19.197 8.473 21.780 Atomic orbital electron populations 1.21764 0.95801 1.01368 1.02089 1.21545 0.96070 0.96734 1.01823 1.21388 0.92943 0.96370 1.03710 1.21712 0.97885 0.94355 1.03873 1.20722 0.81931 0.91589 0.76141 1.90703 1.54769 1.46606 1.49827 1.48269 1.05328 1.07812 1.72960 1.21745 0.91247 0.89446 0.99124 1.21907 0.98438 0.98305 0.98389 1.22046 0.99413 0.93611 1.02216 1.20672 0.91288 0.85118 0.96771 0.90790 1.44203 1.57062 1.12550 1.18539 1.21444 0.95156 0.98628 0.89692 1.18948 1.43943 0.87288 0.88864 0.89345 1.25093 0.99760 0.95933 0.96808 1.69855 1.49251 1.05614 1.30349 0.87006 0.77942 0.76964 0.85774 1.21591 1.23496 1.20384 1.22485 0.99261 0.81431 0.99833 0.92905 0.92703 0.92603 0.92024 0.92132 0.91302 0.91126 0.89079 0.89287 0.90118 0.91597 0.91522 0.91074 0.91217 0.92346 0.97146 0.92282 0.94277 0.92754 0.92379 0.89021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.91 37.16 0.37 -0.80 16 2 C -0.12 -0.98 5.93 -26.73 -0.16 -1.14 16 3 C -0.11 -1.11 4.50 -26.74 -0.12 -1.23 16 4 C -0.14 -1.41 4.05 -27.89 -0.11 -1.53 16 5 C 0.51 7.78 7.70 -10.99 -0.08 7.70 16 6 O -0.54 -10.76 15.39 5.56 0.09 -10.68 16 7 N -0.61 -9.04 2.97 -172.74 -0.51 -9.55 16 8 C 0.11 1.15 6.34 -3.71 -0.02 1.12 16 9 C -0.13 -1.50 6.08 -26.61 -0.16 -1.67 16 10 C -0.13 -2.05 5.12 -26.69 -0.14 -2.19 16 11 C 0.17 3.32 2.74 -67.79 -0.19 3.13 16 12 H 0.07 1.56 7.84 -51.93 -0.41 1.15 16 13 N -0.60 -14.29 2.67 -173.32 -0.46 -14.75 16 14 C 0.10 2.10 7.29 59.85 0.44 2.53 16 15 C -0.26 -7.44 10.03 -15.06 -0.15 -7.59 16 16 H 0.09 2.67 7.99 -52.48 -0.42 2.25 16 17 C 0.02 0.67 5.24 -17.43 -0.09 0.58 16 18 N -0.91 -28.27 13.97 55.49 0.78 -27.50 16 19 Si 0.89 23.20 23.91 -169.99 -4.06 19.14 16 20 H -0.29 -7.13 6.42 56.52 0.36 -6.76 16 21 H -0.31 -8.13 7.11 56.52 0.40 -7.73 16 22 H -0.28 -7.23 6.58 56.52 0.37 -6.86 16 23 C 0.09 1.73 5.79 -3.69 -0.02 1.71 16 24 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 25 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.07 0.80 8.10 -51.93 -0.42 0.38 16 30 H 0.07 0.85 8.10 -51.93 -0.42 0.43 16 31 H 0.09 0.78 7.69 -51.93 -0.40 0.38 16 32 H 0.09 0.72 7.94 -51.93 -0.41 0.31 16 33 H 0.08 0.63 5.93 -51.93 -0.31 0.32 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 38 H 0.06 0.87 6.71 -51.93 -0.35 0.52 16 39 H 0.01 0.25 5.07 -51.93 -0.26 -0.02 16 40 H 0.06 1.39 5.91 -51.93 -0.31 1.08 16 41 H 0.04 0.71 6.45 -51.93 -0.34 0.38 16 42 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 43 H 0.06 1.05 7.51 -51.93 -0.39 0.66 16 44 H 0.09 2.01 7.01 -51.93 -0.36 1.65 16 LS Contribution 333.62 15.07 5.03 5.03 Total: -1.00 -33.20 333.62 -7.40 -40.60 By element: Atomic # 1 Polarization: 4.89 SS G_CDS: -7.80 Total: -2.91 kcal Atomic # 6 Polarization: 1.07 SS G_CDS: -0.44 Total: 0.63 kcal Atomic # 7 Polarization: -51.60 SS G_CDS: -0.20 Total: -51.81 kcal Atomic # 8 Polarization: -10.76 SS G_CDS: 0.09 Total: -10.68 kcal Atomic # 14 Polarization: 23.20 SS G_CDS: -4.06 Total: 19.14 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -33.20 -7.40 -40.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731708306.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.801 kcal (2) G-P(sol) polarization free energy of solvation -33.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds