Wall clock time and date at job start Mon Mar 30 2020 00:27:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47455 * 2 1 4 4 C 1.52991 * 109.47306 * 179.97438 * 3 2 1 5 5 C 1.50703 * 109.47197 * 179.97438 * 4 3 2 6 6 O 1.21276 * 119.99955 * 0.02562 * 5 4 3 7 7 N 1.34773 * 120.00024 * 180.02562 * 5 4 3 8 8 C 1.46924 * 120.63336 * 359.97438 * 7 5 4 9 9 C 1.53196 * 108.77623 * 126.41444 * 8 7 5 10 10 C 1.53039 * 109.30922 * 54.63603 * 9 8 7 11 11 C 1.53035 * 109.54222 * 298.63568 * 10 9 8 12 12 H 1.09003 * 109.49963 * 301.38308 * 11 10 9 13 13 N 1.46501 * 109.50118 * 181.31900 * 11 10 9 14 14 C 1.46500 * 119.99430 * 300.00310 * 13 11 10 15 15 C 1.36932 * 120.00268 * 120.00034 * 13 11 10 16 16 H 1.08005 * 119.99832 * 340.37210 * 15 13 11 17 17 C 1.38805 * 120.00212 * 160.37451 * 15 13 11 18 18 N 1.31624 * 120.00475 * 157.35616 * 17 15 13 19 19 Si 1.86805 * 119.99975 * 337.35785 * 17 15 13 20 20 H 1.48508 * 109.46911 * 86.21899 * 19 17 15 21 21 H 1.48494 * 109.47161 * 206.21843 * 19 17 15 22 22 H 1.48497 * 109.47309 * 326.22231 * 19 17 15 23 23 C 1.46924 * 120.63222 * 180.02562 * 7 5 4 24 24 H 1.09002 * 109.47335 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.47132 * 299.99785 * 1 2 3 26 26 H 1.08996 * 109.47105 * 60.00342 * 1 2 3 27 27 H 1.09002 * 109.46849 * 239.99535 * 2 1 3 28 28 H 1.09005 * 109.46742 * 120.00397 * 2 1 3 29 29 H 1.09003 * 109.47067 * 59.99570 * 3 2 1 30 30 H 1.09006 * 109.47073 * 300.00313 * 3 2 1 31 31 H 1.09003 * 109.47400 * 59.99785 * 4 3 2 32 32 H 1.08996 * 109.47363 * 300.00143 * 4 3 2 33 33 H 1.09005 * 109.58357 * 6.62662 * 8 7 5 34 34 H 1.08997 * 109.59429 * 246.20374 * 8 7 5 35 35 H 1.09003 * 109.49354 * 294.68909 * 9 8 7 36 36 H 1.08999 * 109.49621 * 174.59355 * 9 8 7 37 37 H 1.09002 * 109.45753 * 178.61475 * 10 9 8 38 38 H 1.09001 * 109.45779 * 58.66048 * 10 9 8 39 39 H 1.09004 * 109.46905 * 267.74925 * 14 13 11 40 40 H 1.09003 * 109.46816 * 147.75861 * 14 13 11 41 41 H 1.09001 * 109.47735 * 27.75369 * 14 13 11 42 42 H 0.97001 * 120.00473 * 180.02562 * 18 17 15 43 43 H 1.09000 * 109.59020 * 113.79554 * 23 7 5 44 44 H 1.09002 * 109.58720 * 353.37520 * 23 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.0724 2.8632 0.0000 6 8 3.2843 3.7850 -0.0004 7 7 5.3974 3.1094 -0.0001 8 6 6.3644 2.0033 0.0010 9 6 7.3373 2.1977 -1.1664 10 6 7.9716 3.5871 -1.0705 11 6 6.8805 4.6558 -1.1679 12 1 6.3449 4.5440 -2.1107 13 7 7.4918 5.9858 -1.1077 14 6 8.2701 6.3814 0.0687 15 6 7.3357 6.8590 -2.1508 16 1 7.0521 6.4906 -3.1256 17 6 7.5420 8.2177 -1.9554 18 7 7.8345 8.9928 -2.9782 19 14 7.4047 8.9462 -0.2408 20 1 8.7094 8.8189 0.4571 21 1 7.0347 10.3808 -0.3407 22 1 6.3610 8.2179 0.5244 23 6 5.9025 4.4891 -0.0002 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8901 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 3.9337 0.9284 -0.8891 32 1 3.9330 0.9287 0.8908 33 1 5.8369 1.0567 -0.1168 34 1 6.9169 2.0016 0.9406 35 1 6.7970 2.1087 -2.1089 36 1 8.1172 1.4376 -1.1204 37 1 8.6827 3.7187 -1.8860 38 1 8.4909 3.6842 -0.1170 39 1 7.6190 6.8869 0.7820 40 1 9.0698 7.0569 -0.2352 41 1 8.7006 5.4950 0.5346 42 1 7.9790 9.9422 -2.8416 43 1 6.4173 4.6899 0.9394 44 1 5.0702 5.1829 -0.1186 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731708306.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:27:48 Heat of formation + Delta-G solvation = -49.081374 kcal Electronic energy + Delta-G solvation = -21423.768316 eV Core-core repulsion = 18375.343492 eV Total energy + Delta-G solvation = -3048.424824 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.27600 -39.13863 -36.94174 -36.23286 -34.11351 -33.08390 -31.87773 -30.58650 -28.19927 -26.83172 -25.72843 -24.64819 -23.01783 -22.00860 -20.99164 -19.81580 -18.91723 -18.09872 -17.34447 -16.99293 -16.82867 -16.17543 -15.69523 -15.42955 -15.11740 -15.00934 -14.49977 -14.39903 -14.32015 -14.23708 -13.85384 -13.68337 -13.53503 -13.22105 -13.06683 -12.43094 -12.21262 -12.17233 -12.12853 -12.07433 -11.86266 -11.82920 -11.67890 -11.57887 -11.45680 -11.42363 -10.79691 -10.71990 -9.71614 -9.03355 -8.20821 -5.49090 1.25865 1.39002 1.46166 1.65408 2.01354 2.37085 3.02936 3.28876 3.56729 3.91946 3.93271 4.02582 4.07936 4.12070 4.18886 4.32467 4.37197 4.46497 4.48851 4.57738 4.63459 4.64597 4.73598 4.78541 4.83166 4.87767 4.93138 4.95675 5.01459 5.04870 5.12525 5.16589 5.30041 5.41085 5.41765 5.48238 5.49971 5.54109 5.77396 6.06010 6.49418 6.85402 7.22065 7.59093 7.90011 8.99075 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.026031 B = 0.004475 C = 0.004127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.403062 B = 6255.606668 C = 6782.355388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.116 4.116 3 C -0.106 4.106 4 C -0.126 4.126 5 C 0.497 3.503 6 O -0.601 6.601 7 N -0.609 5.609 8 C 0.103 3.897 9 C -0.124 4.124 10 C -0.124 4.124 11 C 0.167 3.833 12 H 0.042 0.958 13 N -0.616 5.616 14 C 0.095 3.905 15 C -0.253 4.253 16 H 0.052 0.948 17 C -0.036 4.036 18 N -0.956 5.956 19 Si 0.954 3.046 20 H -0.261 1.261 21 H -0.315 1.315 22 H -0.280 1.280 23 C 0.106 3.894 24 H 0.067 0.933 25 H 0.048 0.952 26 H 0.045 0.955 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.049 0.951 30 H 0.044 0.956 31 H 0.120 0.880 32 H 0.125 0.875 33 H 0.122 0.878 34 H 0.088 0.912 35 H 0.059 0.941 36 H 0.110 0.890 37 H 0.054 0.946 38 H 0.073 0.927 39 H 0.007 0.993 40 H 0.043 0.957 41 H 0.083 0.917 42 H 0.262 0.738 43 H 0.068 0.932 44 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.532 -24.415 9.901 26.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.154 4.154 3 C -0.144 4.144 4 C -0.165 4.165 5 C 0.288 3.712 6 O -0.483 6.483 7 N -0.342 5.342 8 C -0.018 4.018 9 C -0.163 4.163 10 C -0.163 4.163 11 C 0.060 3.940 12 H 0.061 0.939 13 N -0.339 5.339 14 C -0.049 4.049 15 C -0.382 4.382 16 H 0.070 0.930 17 C -0.230 4.230 18 N -0.602 5.602 19 Si 0.784 3.216 20 H -0.187 1.187 21 H -0.244 1.244 22 H -0.207 1.207 23 C -0.019 4.019 24 H 0.086 0.914 25 H 0.067 0.933 26 H 0.064 0.936 27 H 0.093 0.907 28 H 0.097 0.903 29 H 0.067 0.933 30 H 0.062 0.938 31 H 0.138 0.862 32 H 0.143 0.857 33 H 0.140 0.860 34 H 0.106 0.894 35 H 0.077 0.923 36 H 0.129 0.871 37 H 0.073 0.927 38 H 0.092 0.908 39 H 0.025 0.975 40 H 0.061 0.939 41 H 0.101 0.899 42 H 0.071 0.929 43 H 0.086 0.914 44 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -4.878 -23.801 9.857 26.219 hybrid contribution -0.275 1.708 0.201 1.741 sum -5.153 -22.093 10.058 24.816 Atomic orbital electron populations 1.21801 0.96095 1.02120 1.01400 1.21505 0.95831 0.94703 1.03328 1.21368 0.93566 0.97929 1.01572 1.21775 0.97212 0.90718 1.06790 1.21788 0.81503 0.93317 0.74623 1.90683 1.56293 1.48879 1.52404 1.48379 1.06246 1.07223 1.72376 1.22152 0.90674 0.89292 0.99708 1.21907 0.99459 0.96344 0.98585 1.21921 0.97576 0.94460 1.02385 1.20824 0.92821 0.84497 0.95845 0.93940 1.44319 1.58155 1.13308 1.18135 1.21485 0.94342 1.00374 0.88739 1.18900 1.42045 0.88195 0.89069 0.92979 1.25719 1.00560 0.96375 1.00389 1.69976 1.51842 1.05821 1.32593 0.85978 0.78852 0.75292 0.81460 1.18687 1.24382 1.20664 1.21974 0.97195 0.83369 0.99403 0.91373 0.93287 0.93552 0.90659 0.90299 0.93254 0.93752 0.86246 0.85661 0.85973 0.89379 0.92258 0.87130 0.92747 0.90802 0.97507 0.93860 0.89853 0.92883 0.91385 0.93751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.14 9.91 71.98 0.71 -1.43 16 2 C -0.12 -1.48 5.93 30.59 0.18 -1.30 16 3 C -0.11 -2.08 4.50 30.59 0.14 -1.94 16 4 C -0.13 -2.12 4.05 29.85 0.12 -2.00 16 5 C 0.50 14.65 7.70 87.66 0.67 15.32 16 6 O -0.60 -24.79 15.39 -3.02 -0.05 -24.83 16 7 N -0.61 -16.78 2.97 -818.84 -2.43 -19.21 16 8 C 0.10 1.65 6.34 86.36 0.55 2.20 16 9 C -0.12 -2.30 6.08 30.67 0.19 -2.11 16 10 C -0.12 -3.51 5.12 30.62 0.16 -3.36 16 11 C 0.17 6.55 2.74 45.08 0.12 6.67 16 12 H 0.04 1.89 7.84 -2.39 -0.02 1.87 16 13 N -0.62 -29.61 2.67 -702.27 -1.88 -31.48 16 14 C 0.09 4.00 7.29 127.77 0.93 4.93 16 15 C -0.25 -14.93 10.03 84.03 0.84 -14.09 16 16 H 0.05 3.37 7.99 -2.91 -0.02 3.35 16 17 C -0.04 -2.18 5.24 84.86 0.44 -1.73 16 18 N -0.96 -61.98 13.97 21.65 0.30 -61.68 16 19 Si 0.95 49.02 23.91 68.60 1.64 50.66 16 20 H -0.26 -12.18 6.42 99.48 0.64 -11.54 16 21 H -0.31 -16.46 7.11 99.48 0.71 -15.75 16 22 H -0.28 -14.36 6.58 99.48 0.65 -13.70 16 23 C 0.11 3.89 5.79 86.38 0.50 4.39 16 24 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 25 H 0.05 0.71 8.14 -2.38 -0.02 0.69 16 26 H 0.05 0.70 8.14 -2.39 -0.02 0.69 16 27 H 0.07 0.78 8.14 -2.39 -0.02 0.77 16 28 H 0.08 0.76 8.14 -2.38 -0.02 0.74 16 29 H 0.05 1.14 8.10 -2.39 -0.02 1.12 16 30 H 0.04 1.08 8.10 -2.38 -0.02 1.06 16 31 H 0.12 1.42 7.69 -2.39 -0.02 1.40 16 32 H 0.13 1.30 7.94 -2.39 -0.02 1.28 16 33 H 0.12 1.04 5.93 -2.38 -0.01 1.03 16 34 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.07 1.87 6.71 -2.39 -0.02 1.86 16 39 H 0.01 0.31 5.07 -2.39 -0.01 0.30 16 40 H 0.04 1.96 5.91 -2.39 -0.01 1.95 16 41 H 0.08 2.76 6.45 -2.39 -0.02 2.74 16 42 H 0.26 16.13 8.31 -92.71 -0.77 15.36 16 43 H 0.07 2.34 7.51 -2.39 -0.02 2.33 16 44 H 0.04 2.04 7.01 -2.39 -0.02 2.02 16 Total: -1.00 -79.43 333.62 3.98 -75.45 By element: Atomic # 1 Polarization: 4.72 SS G_CDS: 0.83 Total: 5.55 kcal Atomic # 6 Polarization: -0.02 SS G_CDS: 5.56 Total: 5.55 kcal Atomic # 7 Polarization: -108.37 SS G_CDS: -4.01 Total: -112.37 kcal Atomic # 8 Polarization: -24.79 SS G_CDS: -0.05 Total: -24.83 kcal Atomic # 14 Polarization: 49.02 SS G_CDS: 1.64 Total: 50.66 kcal Total: -79.43 3.98 -75.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731708306.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.370 kcal (2) G-P(sol) polarization free energy of solvation -79.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds