Wall clock time and date at job start Mon Mar 30 2020 00:43:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.46785 * 2 1 4 4 C 1.53001 * 109.47087 * 180.02562 * 3 2 1 5 5 H 1.09008 * 109.47026 * 305.00074 * 4 3 2 6 6 C 1.53001 * 109.47174 * 64.99632 * 4 3 2 7 7 C 1.53000 * 109.47254 * 184.99987 * 4 3 2 8 8 C 1.50698 * 109.47155 * 174.99815 * 7 4 3 9 9 O 1.21285 * 119.99902 * 359.97438 * 8 7 4 10 10 N 1.34773 * 120.00207 * 180.02562 * 8 7 4 11 11 C 1.46500 * 120.00008 * 180.02562 * 10 8 7 12 12 C 1.53004 * 109.46948 * 174.94227 * 11 10 8 13 13 N 1.46505 * 115.55024 * 80.38544 * 12 11 10 14 14 C 1.36942 * 119.99583 * 65.27855 * 13 12 11 15 15 H 1.08007 * 119.99964 * 354.96284 * 14 13 12 16 16 C 1.38809 * 119.99798 * 174.68484 * 14 13 12 17 17 N 1.31619 * 120.00146 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 119.99839 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47378 * 89.99754 * 18 16 14 20 20 H 1.48498 * 109.47141 * 210.00161 * 18 16 14 21 21 H 1.48500 * 109.47218 * 329.99749 * 18 16 14 22 22 C 1.52999 * 117.50098 * 226.06177 * 12 11 10 23 23 C 1.53002 * 117.49982 * 294.71995 * 12 11 10 24 24 H 1.09006 * 109.46505 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47472 * 299.99797 * 1 2 3 26 26 H 1.09003 * 109.47210 * 60.00471 * 1 2 3 27 27 H 1.09003 * 109.47275 * 240.00152 * 2 1 3 28 28 H 1.08999 * 109.47260 * 120.00035 * 2 1 3 29 29 H 1.08994 * 109.46949 * 59.99883 * 3 2 1 30 30 H 1.08999 * 109.47250 * 300.00041 * 3 2 1 31 31 H 1.08999 * 109.46901 * 60.00132 * 6 4 3 32 32 H 1.08998 * 109.46942 * 180.02562 * 6 4 3 33 33 H 1.08997 * 109.47376 * 300.00530 * 6 4 3 34 34 H 1.09002 * 109.47024 * 54.99952 * 7 4 3 35 35 H 1.09002 * 109.46875 * 294.99875 * 7 4 3 36 36 H 0.97001 * 119.99786 * 359.97438 * 10 8 7 37 37 H 1.08994 * 109.47255 * 54.94194 * 11 10 8 38 38 H 1.08999 * 109.46673 * 294.93754 * 11 10 8 39 39 H 0.96998 * 120.00497 * 245.27841 * 13 12 11 40 40 H 0.97000 * 119.99696 * 180.02562 * 17 16 14 41 41 H 1.08998 * 117.49974 * 215.00780 * 22 12 11 42 42 H 1.09000 * 117.49520 * 0.02562 * 22 12 11 43 43 H 1.09000 * 117.49687 * 359.97438 * 23 12 11 44 44 H 1.08995 * 117.49858 * 144.97063 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 1 3.9337 0.8530 0.8410 6 6 4.0795 0.8331 -1.3083 7 6 4.0800 2.8796 0.1251 8 6 5.5819 2.8707 0.2480 9 8 6.1850 1.8185 0.2367 10 7 6.2549 4.0318 0.3715 11 6 7.7150 4.0231 0.4905 12 6 8.2353 5.4619 0.4901 13 7 8.1378 6.1694 1.7693 14 6 8.8702 5.7430 2.8450 15 1 9.4564 4.8386 2.7749 16 6 8.8636 6.4763 4.0236 17 7 8.1531 7.5811 4.1074 18 14 9.8631 5.8951 5.4908 19 1 11.2258 6.4814 5.4251 20 1 9.1978 6.3281 6.7458 21 1 9.9602 4.4134 5.4680 22 6 9.4370 5.7784 -0.4025 23 6 8.0437 6.2821 -0.7872 24 1 -0.3632 -1.0278 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.6766 1.9563 0.8899 30 1 1.6766 1.9564 -0.8900 31 1 3.7157 1.4227 -2.1498 32 1 5.1694 0.8328 -1.3085 33 1 3.7161 -0.1906 -1.3979 34 1 3.6457 3.3431 1.0109 35 1 3.7912 3.4464 -0.7601 36 1 5.7725 4.8733 0.3810 37 1 8.1449 3.4810 -0.3518 38 1 8.0007 3.5336 1.4216 39 1 7.5547 6.9398 1.8543 40 1 8.1488 8.0936 4.9309 41 1 10.1551 6.5129 -0.0380 42 1 9.8566 4.9616 -0.9898 43 1 7.5473 5.7965 -1.6274 44 1 7.8447 7.3480 -0.6757 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733239706.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:43:56 Heat of formation + Delta-G solvation = -32.004859 kcal Electronic energy + Delta-G solvation = -20564.113740 eV Core-core repulsion = 17516.429409 eV Total energy + Delta-G solvation = -3047.684331 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.64436 -37.69888 -36.61803 -33.70554 -33.01335 -32.75263 -29.72051 -28.53894 -26.69552 -25.79224 -23.90767 -22.24846 -21.80302 -20.29426 -19.76292 -18.99325 -17.14862 -16.73993 -15.77978 -15.70958 -15.29065 -14.88951 -14.38279 -14.12436 -13.88587 -13.60709 -13.55828 -13.09314 -13.00389 -12.46669 -12.38090 -11.93160 -11.83996 -11.69814 -11.55821 -11.03898 -11.01328 -10.96229 -10.88231 -10.74762 -10.63580 -10.51856 -10.29169 -10.26277 -9.71841 -9.55048 -9.26856 -8.84940 -8.55397 -7.08161 -5.84991 -3.15540 2.99115 3.40537 3.46481 3.48041 3.52638 4.41793 4.57637 4.66735 4.75770 4.80843 5.03309 5.09975 5.20745 5.25210 5.29632 5.44106 5.48069 5.48635 5.58794 5.60264 5.64302 5.69010 5.75991 5.80987 5.83527 5.88846 6.04205 6.06369 6.09170 6.15839 6.27120 6.39592 6.42758 6.49177 6.57288 6.66852 6.77819 6.91493 7.68200 7.93556 8.33332 8.60960 9.44546 9.97861 10.33160 11.36974 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.020163 B = 0.003769 C = 0.003425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.351865 B = 7426.395063 C = 8174.041763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.116 4.116 4 C -0.075 4.075 5 H 0.077 0.923 6 C -0.153 4.153 7 C -0.138 4.138 8 C 0.508 3.492 9 O -0.549 6.549 10 N -0.713 5.713 11 C 0.148 3.852 12 C 0.128 3.872 13 N -0.690 5.690 14 C -0.237 4.237 15 H 0.072 0.928 16 C -0.010 4.010 17 N -0.932 5.932 18 Si 0.908 3.092 19 H -0.289 1.289 20 H -0.291 1.291 21 H -0.280 1.280 22 C -0.187 4.187 23 C -0.185 4.185 24 H 0.051 0.949 25 H 0.053 0.947 26 H 0.052 0.948 27 H 0.064 0.936 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.045 0.955 32 H 0.075 0.925 33 H 0.051 0.949 34 H 0.091 0.909 35 H 0.089 0.911 36 H 0.400 0.600 37 H 0.059 0.941 38 H 0.074 0.926 39 H 0.387 0.613 40 H 0.256 0.744 41 H 0.095 0.905 42 H 0.082 0.918 43 H 0.086 0.914 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.931 -9.201 -11.382 18.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.153 4.153 4 C -0.094 4.094 5 H 0.096 0.904 6 C -0.210 4.210 7 C -0.178 4.178 8 C 0.294 3.706 9 O -0.428 6.428 10 N -0.363 5.363 11 C 0.022 3.978 12 C 0.034 3.966 13 N -0.329 5.329 14 C -0.368 4.368 15 H 0.090 0.910 16 C -0.206 4.206 17 N -0.580 5.580 18 Si 0.739 3.261 19 H -0.216 1.216 20 H -0.217 1.217 21 H -0.206 1.206 22 C -0.228 4.228 23 C -0.223 4.223 24 H 0.070 0.930 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.082 0.918 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.064 0.936 32 H 0.094 0.906 33 H 0.070 0.930 34 H 0.110 0.890 35 H 0.107 0.893 36 H 0.234 0.766 37 H 0.077 0.923 38 H 0.092 0.908 39 H 0.222 0.778 40 H 0.066 0.934 41 H 0.114 0.886 42 H 0.100 0.900 43 H 0.105 0.895 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -11.381 -10.003 -11.212 18.849 hybrid contribution 0.191 0.606 0.949 1.142 sum -11.189 -9.397 -10.263 17.856 Atomic orbital electron populations 1.21784 0.96161 1.01367 1.01681 1.21574 0.95441 0.97113 1.02239 1.21688 0.94907 0.96820 1.01922 1.20884 0.94198 0.94519 0.99793 0.90427 1.21986 1.03218 0.99907 0.95870 1.21754 0.92653 0.99378 1.04012 1.20624 0.89923 0.83789 0.76223 1.90634 1.70499 1.30932 1.50726 1.45972 1.08337 1.08627 1.73380 1.21217 0.78865 0.96217 1.01511 1.20180 1.00331 0.91174 0.84909 1.41788 1.52085 1.34477 1.04562 1.19169 1.21303 1.05958 0.90389 0.90987 1.24760 1.00434 0.97073 0.98349 1.69658 1.44370 1.16739 1.27216 0.86177 0.79604 0.78078 0.82288 1.21618 1.21747 1.20595 1.23368 0.91823 1.03310 1.04324 1.23069 1.00938 1.00100 0.98203 0.92998 0.92818 0.92894 0.91764 0.92035 0.91971 0.92046 0.93620 0.90632 0.92999 0.89020 0.89283 0.76601 0.92270 0.90801 0.77763 0.93415 0.88623 0.89968 0.89527 0.89031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.91 37.16 0.37 -0.76 16 2 C -0.13 -1.07 5.69 -26.73 -0.15 -1.22 16 3 C -0.12 -1.04 4.68 -26.73 -0.13 -1.16 16 4 C -0.08 -0.84 2.04 -90.62 -0.18 -1.02 16 5 H 0.08 1.01 7.96 -51.92 -0.41 0.60 16 6 C -0.15 -1.73 8.69 37.16 0.32 -1.41 16 7 C -0.14 -1.58 5.17 -27.88 -0.14 -1.72 16 8 C 0.51 7.90 7.55 -10.99 -0.08 7.82 16 9 O -0.55 -10.33 13.96 5.55 0.08 -10.25 16 10 N -0.71 -11.28 5.51 -60.30 -0.33 -11.61 16 11 C 0.15 2.70 5.73 -4.04 -0.02 2.67 16 12 C 0.13 2.44 2.15 -131.81 -0.28 2.15 16 13 N -0.69 -16.43 5.49 -47.22 -0.26 -16.69 16 14 C -0.24 -6.40 9.56 -15.06 -0.14 -6.54 16 15 H 0.07 1.93 7.77 -52.48 -0.41 1.52 16 16 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 17 N -0.93 -27.36 13.06 55.49 0.72 -26.64 16 18 Si 0.91 22.24 29.55 -169.99 -5.02 17.22 16 19 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 20 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 21 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 22 C -0.19 -3.26 10.11 -26.70 -0.27 -3.53 16 23 C -0.19 -2.94 10.14 -26.69 -0.27 -3.21 16 24 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 27 H 0.06 0.54 6.56 -51.93 -0.34 0.20 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.07 1.06 5.95 -51.93 -0.31 0.75 16 33 H 0.05 0.53 6.56 -51.93 -0.34 0.19 16 34 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 35 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.40 5.72 8.48 -40.82 -0.35 5.38 16 37 H 0.06 1.03 7.94 -51.93 -0.41 0.62 16 38 H 0.07 1.58 7.73 -51.93 -0.40 1.18 16 39 H 0.39 9.78 8.04 -40.82 -0.33 9.45 16 40 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 41 H 0.10 1.81 8.14 -51.93 -0.42 1.39 16 42 H 0.08 1.27 8.08 -51.93 -0.42 0.85 16 43 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 44 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 LS Contribution 356.90 15.07 5.38 5.38 Total: -1.00 -30.17 356.90 -8.45 -38.62 By element: Atomic # 1 Polarization: 20.22 SS G_CDS: -7.93 Total: 12.29 kcal Atomic # 6 Polarization: -7.22 SS G_CDS: -1.08 Total: -8.31 kcal Atomic # 7 Polarization: -55.07 SS G_CDS: 0.13 Total: -54.94 kcal Atomic # 8 Polarization: -10.33 SS G_CDS: 0.08 Total: -10.25 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -30.17 -8.45 -38.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733239706.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.611 kcal (2) G-P(sol) polarization free energy of solvation -30.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds