Wall clock time and date at job start Mon Mar 30 2020 00:43:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.46785 * 2 1 4 4 C 1.53001 * 109.47087 * 180.02562 * 3 2 1 5 5 H 1.09008 * 109.47026 * 305.00074 * 4 3 2 6 6 C 1.53001 * 109.47174 * 64.99632 * 4 3 2 7 7 C 1.53000 * 109.47254 * 184.99987 * 4 3 2 8 8 C 1.50698 * 109.47155 * 174.99815 * 7 4 3 9 9 O 1.21285 * 119.99902 * 359.97438 * 8 7 4 10 10 N 1.34773 * 120.00207 * 180.02562 * 8 7 4 11 11 C 1.46500 * 120.00008 * 180.02562 * 10 8 7 12 12 C 1.53004 * 109.46948 * 174.94227 * 11 10 8 13 13 N 1.46505 * 115.55024 * 80.38544 * 12 11 10 14 14 C 1.36942 * 119.99583 * 65.27855 * 13 12 11 15 15 H 1.08007 * 119.99964 * 354.96284 * 14 13 12 16 16 C 1.38809 * 119.99798 * 174.68484 * 14 13 12 17 17 N 1.31619 * 120.00146 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 119.99839 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47378 * 89.99754 * 18 16 14 20 20 H 1.48498 * 109.47141 * 210.00161 * 18 16 14 21 21 H 1.48500 * 109.47218 * 329.99749 * 18 16 14 22 22 C 1.52999 * 117.50098 * 226.06177 * 12 11 10 23 23 C 1.53002 * 117.49982 * 294.71995 * 12 11 10 24 24 H 1.09006 * 109.46505 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47472 * 299.99797 * 1 2 3 26 26 H 1.09003 * 109.47210 * 60.00471 * 1 2 3 27 27 H 1.09003 * 109.47275 * 240.00152 * 2 1 3 28 28 H 1.08999 * 109.47260 * 120.00035 * 2 1 3 29 29 H 1.08994 * 109.46949 * 59.99883 * 3 2 1 30 30 H 1.08999 * 109.47250 * 300.00041 * 3 2 1 31 31 H 1.08999 * 109.46901 * 60.00132 * 6 4 3 32 32 H 1.08998 * 109.46942 * 180.02562 * 6 4 3 33 33 H 1.08997 * 109.47376 * 300.00530 * 6 4 3 34 34 H 1.09002 * 109.47024 * 54.99952 * 7 4 3 35 35 H 1.09002 * 109.46875 * 294.99875 * 7 4 3 36 36 H 0.97001 * 119.99786 * 359.97438 * 10 8 7 37 37 H 1.08994 * 109.47255 * 54.94194 * 11 10 8 38 38 H 1.08999 * 109.46673 * 294.93754 * 11 10 8 39 39 H 0.96998 * 120.00497 * 245.27841 * 13 12 11 40 40 H 0.97000 * 119.99696 * 180.02562 * 17 16 14 41 41 H 1.08998 * 117.49974 * 215.00780 * 22 12 11 42 42 H 1.09000 * 117.49520 * 0.02562 * 22 12 11 43 43 H 1.09000 * 117.49687 * 359.97438 * 23 12 11 44 44 H 1.08995 * 117.49858 * 144.97063 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 1 3.9337 0.8530 0.8410 6 6 4.0795 0.8331 -1.3083 7 6 4.0800 2.8796 0.1251 8 6 5.5819 2.8707 0.2480 9 8 6.1850 1.8185 0.2367 10 7 6.2549 4.0318 0.3715 11 6 7.7150 4.0231 0.4905 12 6 8.2353 5.4619 0.4901 13 7 8.1378 6.1694 1.7693 14 6 8.8702 5.7430 2.8450 15 1 9.4564 4.8386 2.7749 16 6 8.8636 6.4763 4.0236 17 7 8.1531 7.5811 4.1074 18 14 9.8631 5.8951 5.4908 19 1 11.2258 6.4814 5.4251 20 1 9.1978 6.3281 6.7458 21 1 9.9602 4.4134 5.4680 22 6 9.4370 5.7784 -0.4025 23 6 8.0437 6.2821 -0.7872 24 1 -0.3632 -1.0278 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.6766 1.9563 0.8899 30 1 1.6766 1.9564 -0.8900 31 1 3.7157 1.4227 -2.1498 32 1 5.1694 0.8328 -1.3085 33 1 3.7161 -0.1906 -1.3979 34 1 3.6457 3.3431 1.0109 35 1 3.7912 3.4464 -0.7601 36 1 5.7725 4.8733 0.3810 37 1 8.1449 3.4810 -0.3518 38 1 8.0007 3.5336 1.4216 39 1 7.5547 6.9398 1.8543 40 1 8.1488 8.0936 4.9309 41 1 10.1551 6.5129 -0.0380 42 1 9.8566 4.9616 -0.9898 43 1 7.5473 5.7965 -1.6274 44 1 7.8447 7.3480 -0.6757 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733239706.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:43:56 Heat of formation + Delta-G solvation = -50.685024 kcal Electronic energy + Delta-G solvation = -20564.923773 eV Core-core repulsion = 17516.429409 eV Total energy + Delta-G solvation = -3048.494364 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.89860 -39.11887 -37.55482 -35.27233 -34.76785 -33.53321 -31.66114 -29.63014 -27.49213 -27.01005 -25.93595 -23.36168 -22.85930 -21.31229 -20.92789 -20.40235 -19.14896 -17.99737 -17.23229 -16.83876 -16.37557 -16.18885 -15.88963 -15.49354 -15.10306 -14.87566 -14.79469 -14.34418 -14.06562 -13.77902 -13.56085 -13.13938 -12.96243 -12.85306 -12.75109 -12.56472 -12.33056 -12.29901 -12.21433 -12.00470 -11.78680 -11.64966 -11.56982 -11.45912 -11.24793 -10.97516 -10.91048 -10.45423 -9.93327 -9.04063 -7.97647 -5.26326 1.45352 1.45693 1.54086 1.76115 2.28338 2.51909 3.10286 3.36522 3.66177 3.81792 3.83778 3.86130 4.00856 4.19550 4.28015 4.30959 4.32305 4.46039 4.60682 4.72854 4.78266 4.80073 4.81816 4.84764 4.94431 4.96664 5.01199 5.03718 5.08779 5.18501 5.22661 5.27991 5.32824 5.38356 5.46066 5.52793 5.53568 5.59534 5.65937 6.25754 6.70002 7.31750 7.37779 8.05051 8.28850 9.24756 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.020163 B = 0.003769 C = 0.003425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.351865 B = 7426.395063 C = 8174.041763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.128 4.128 3 C -0.109 4.109 4 C -0.074 4.074 5 H 0.051 0.949 6 C -0.149 4.149 7 C -0.130 4.130 8 C 0.503 3.497 9 O -0.586 6.586 10 N -0.710 5.710 11 C 0.161 3.839 12 C 0.101 3.899 13 N -0.699 5.699 14 C -0.230 4.230 15 H 0.067 0.933 16 C -0.068 4.068 17 N -0.964 5.964 18 Si 0.964 3.036 19 H -0.287 1.287 20 H -0.294 1.294 21 H -0.276 1.276 22 C -0.187 4.187 23 C -0.151 4.151 24 H 0.055 0.945 25 H 0.053 0.947 26 H 0.059 0.941 27 H 0.064 0.936 28 H 0.051 0.949 29 H 0.066 0.934 30 H 0.076 0.924 31 H 0.062 0.938 32 H 0.045 0.955 33 H 0.058 0.942 34 H 0.104 0.896 35 H 0.119 0.881 36 H 0.409 0.591 37 H 0.069 0.931 38 H 0.034 0.966 39 H 0.378 0.622 40 H 0.251 0.749 41 H 0.077 0.923 42 H 0.105 0.895 43 H 0.118 0.882 44 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.173 -9.392 -12.980 20.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.165 4.165 3 C -0.146 4.146 4 C -0.093 4.093 5 H 0.070 0.930 6 C -0.206 4.206 7 C -0.170 4.170 8 C 0.291 3.709 9 O -0.467 6.467 10 N -0.360 5.360 11 C 0.034 3.966 12 C 0.009 3.991 13 N -0.338 5.338 14 C -0.362 4.362 15 H 0.085 0.915 16 C -0.261 4.261 17 N -0.615 5.615 18 Si 0.794 3.206 19 H -0.214 1.214 20 H -0.221 1.221 21 H -0.201 1.201 22 C -0.228 4.228 23 C -0.188 4.188 24 H 0.074 0.926 25 H 0.073 0.927 26 H 0.078 0.922 27 H 0.083 0.917 28 H 0.070 0.930 29 H 0.084 0.916 30 H 0.094 0.906 31 H 0.081 0.919 32 H 0.064 0.936 33 H 0.077 0.923 34 H 0.122 0.878 35 H 0.137 0.863 36 H 0.245 0.755 37 H 0.087 0.913 38 H 0.052 0.948 39 H 0.211 0.789 40 H 0.060 0.940 41 H 0.095 0.905 42 H 0.123 0.877 43 H 0.136 0.864 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -12.624 -10.211 -12.850 20.706 hybrid contribution 0.589 0.600 1.359 1.598 sum -12.035 -9.611 -11.491 19.216 Atomic orbital electron populations 1.21766 0.95128 1.01836 1.02066 1.21579 0.96335 0.96783 1.01823 1.21632 0.92867 0.97304 1.02815 1.20862 0.95820 0.93919 0.98672 0.93030 1.21923 1.01189 1.00837 0.96616 1.21807 0.89132 1.00112 1.05929 1.21408 0.91618 0.82898 0.74942 1.90627 1.71644 1.32192 1.52211 1.45947 1.07387 1.09376 1.73306 1.20890 0.80538 0.95289 0.99865 1.20357 1.02801 0.91718 0.84242 1.41819 1.51613 1.34498 1.05826 1.19394 1.20292 1.05174 0.91340 0.91461 1.25430 1.02168 0.97685 1.00821 1.69781 1.46236 1.17954 1.27485 0.85275 0.78239 0.77708 0.79371 1.21382 1.22083 1.20128 1.23376 0.91956 1.03651 1.03781 1.23135 0.99210 0.99860 0.96613 0.92571 0.92742 0.92173 0.91743 0.92999 0.91569 0.90570 0.91932 0.93628 0.92324 0.87752 0.86334 0.75536 0.91254 0.94768 0.78870 0.93981 0.90458 0.87674 0.86357 0.88986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 9.91 71.98 0.71 -1.20 16 2 C -0.13 -1.96 5.69 30.60 0.17 -1.78 16 3 C -0.11 -1.70 4.68 30.60 0.14 -1.55 16 4 C -0.07 -1.54 2.04 -10.79 -0.02 -1.57 16 5 H 0.05 1.34 7.96 -2.38 -0.02 1.33 16 6 C -0.15 -3.18 8.69 71.98 0.63 -2.55 16 7 C -0.13 -2.70 5.17 29.85 0.15 -2.54 16 8 C 0.50 15.20 7.55 87.66 0.66 15.86 16 9 O -0.59 -22.20 13.96 -3.04 -0.04 -22.25 16 10 N -0.71 -21.64 5.51 -463.06 -2.55 -24.19 16 11 C 0.16 5.79 5.73 86.38 0.49 6.29 16 12 C 0.10 3.75 2.15 3.60 0.01 3.76 16 13 N -0.70 -33.44 5.49 -303.32 -1.67 -35.11 16 14 C -0.23 -12.54 9.56 84.03 0.80 -11.74 16 15 H 0.07 3.66 7.77 -2.91 -0.02 3.64 16 16 C -0.07 -3.87 5.50 84.86 0.47 -3.40 16 17 N -0.96 -57.44 13.06 21.65 0.28 -57.16 16 18 Si 0.96 46.31 29.55 68.60 2.03 48.34 16 19 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 20 H -0.29 -14.17 7.11 99.48 0.71 -13.46 16 21 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 22 C -0.19 -6.20 10.11 30.62 0.31 -5.89 16 23 C -0.15 -4.36 10.14 30.62 0.31 -4.05 16 24 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 25 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 26 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 27 H 0.06 0.98 6.56 -2.39 -0.02 0.96 16 28 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.04 1.26 5.95 -2.39 -0.01 1.25 16 33 H 0.06 1.14 6.56 -2.39 -0.02 1.13 16 34 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.12 1.80 8.14 -2.39 -0.02 1.78 16 36 H 0.41 10.97 8.48 -92.71 -0.79 10.19 16 37 H 0.07 2.35 7.94 -2.39 -0.02 2.33 16 38 H 0.03 1.49 7.73 -2.39 -0.02 1.48 16 39 H 0.38 19.24 8.04 -92.71 -0.75 18.49 16 40 H 0.25 14.61 8.31 -92.71 -0.77 13.83 16 41 H 0.08 2.86 8.14 -2.39 -0.02 2.84 16 42 H 0.10 2.99 8.08 -2.39 -0.02 2.97 16 43 H 0.12 2.73 8.14 -2.39 -0.02 2.71 16 44 H 0.09 2.72 8.14 -2.39 -0.02 2.70 16 Total: -1.00 -66.12 356.90 2.33 -63.78 By element: Atomic # 1 Polarization: 37.51 SS G_CDS: -0.56 Total: 36.96 kcal Atomic # 6 Polarization: -15.22 SS G_CDS: 4.84 Total: -10.38 kcal Atomic # 7 Polarization: -112.52 SS G_CDS: -3.94 Total: -116.46 kcal Atomic # 8 Polarization: -22.20 SS G_CDS: -0.04 Total: -22.25 kcal Atomic # 14 Polarization: 46.31 SS G_CDS: 2.03 Total: 48.34 kcal Total: -66.12 2.33 -63.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733239706.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.099 kcal (2) G-P(sol) polarization free energy of solvation -66.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds