Wall clock time and date at job start Mon Mar 30 2020 00:43:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53005 * 109.47353 * 2 1 4 4 C 1.52999 * 109.47540 * 180.02562 * 3 2 1 5 5 H 1.08997 * 109.46972 * 54.99381 * 4 3 2 6 6 C 1.53005 * 109.46783 * 294.99845 * 4 3 2 7 7 C 1.52996 * 109.47220 * 174.99915 * 4 3 2 8 8 C 1.50704 * 109.47023 * 184.99993 * 7 4 3 9 9 O 1.21279 * 119.99832 * 359.97438 * 8 7 4 10 10 N 1.34772 * 119.99933 * 180.02562 * 8 7 4 11 11 C 1.46498 * 120.00063 * 179.97438 * 10 8 7 12 12 C 1.53000 * 109.47537 * 175.81075 * 11 10 8 13 13 N 1.46506 * 115.55089 * 82.27655 * 12 11 10 14 14 C 1.36936 * 120.00209 * 278.08954 * 13 12 11 15 15 H 1.07992 * 119.99847 * 353.92716 * 14 13 12 16 16 C 1.38816 * 119.99793 * 173.92740 * 14 13 12 17 17 N 1.31616 * 119.99879 * 0.02562 * 16 14 13 18 18 Si 1.86794 * 119.99860 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.47146 * 180.02562 * 18 16 14 20 20 H 1.48503 * 109.47347 * 300.00287 * 18 16 14 21 21 H 1.48499 * 109.47032 * 60.00389 * 18 16 14 22 22 C 1.52989 * 117.52068 * 227.98326 * 12 11 10 23 23 C 1.53004 * 60.00317 * 107.47874 * 22 12 11 24 24 H 1.09000 * 109.47326 * 299.99952 * 1 2 3 25 25 H 1.09000 * 109.47481 * 60.00131 * 1 2 3 26 26 H 1.09005 * 109.47028 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47326 * 240.00048 * 2 1 3 28 28 H 1.09000 * 109.47481 * 119.99869 * 2 1 3 29 29 H 1.09000 * 109.46865 * 59.99766 * 3 2 1 30 30 H 1.09000 * 109.46720 * 300.00335 * 3 2 1 31 31 H 1.09002 * 109.46695 * 179.97438 * 6 4 3 32 32 H 1.09001 * 109.47123 * 300.00033 * 6 4 3 33 33 H 1.09002 * 109.47111 * 60.00183 * 6 4 3 34 34 H 1.09001 * 109.46898 * 64.99959 * 7 4 3 35 35 H 1.08996 * 109.47020 * 305.00008 * 7 4 3 36 36 H 0.97001 * 120.00107 * 0.02562 * 10 8 7 37 37 H 1.08997 * 109.47309 * 55.80716 * 11 10 8 38 38 H 1.09007 * 109.46841 * 295.80770 * 11 10 8 39 39 H 0.97001 * 119.99614 * 98.08521 * 13 12 11 40 40 H 0.97002 * 120.00094 * 180.02562 * 17 16 14 41 41 H 1.09001 * 117.50488 * 214.96637 * 22 12 11 42 42 H 1.09004 * 117.50058 * 359.97438 * 22 12 11 43 43 H 1.08995 * 117.50200 * 252.51713 * 23 22 12 44 44 H 1.08999 * 117.51821 * 107.48240 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 1 3.9329 0.8532 -0.8426 6 6 4.0805 0.8328 1.3065 7 6 4.0799 2.8796 -0.1264 8 6 5.5818 2.8706 -0.2505 9 8 6.1849 1.8184 -0.2391 10 7 6.2547 4.0318 -0.3733 11 6 7.7148 4.0231 -0.4934 12 6 8.2161 5.4503 -0.7232 13 7 8.3635 6.2700 0.4820 14 6 7.2718 6.8958 1.0222 15 1 6.3230 6.8665 0.5073 16 6 7.3849 7.5678 2.2316 17 7 8.5415 7.6039 2.8587 18 14 5.8959 8.4220 2.9681 19 1 6.2775 9.0619 4.2527 20 1 5.4038 9.4591 2.0260 21 1 4.8229 7.4246 3.2109 22 6 9.2199 5.6730 -1.8562 23 6 7.7758 6.1554 -2.0077 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6766 1.9563 0.8900 30 1 1.6766 1.9563 -0.8900 31 1 5.1705 0.8324 1.3058 32 1 3.7174 1.4221 2.1485 33 1 3.7172 -0.1910 1.3960 34 1 3.7919 3.4461 0.7592 35 1 3.6449 3.3433 -1.0117 36 1 5.7724 4.8734 -0.3813 37 1 8.0063 3.3956 -1.3355 38 1 8.1524 3.6275 0.4233 39 1 9.2345 6.3695 0.8974 40 1 8.6204 8.0732 3.7040 41 1 9.9899 6.4295 -1.7050 42 1 9.5236 4.8027 -2.4379 43 1 7.1293 5.6025 -2.6891 44 1 7.5955 7.2292 -1.9559 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733239707.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:43:59 Heat of formation + Delta-G solvation = -32.033445 kcal Electronic energy + Delta-G solvation = -20804.258061 eV Core-core repulsion = 17756.572490 eV Total energy + Delta-G solvation = -3047.685571 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.57435 -37.69412 -36.56790 -33.59652 -33.02185 -32.70077 -29.70051 -28.48165 -26.62792 -25.83974 -23.85728 -22.15459 -21.86792 -20.22191 -19.69642 -18.97720 -17.12575 -16.60787 -15.85900 -15.56743 -15.20160 -14.96686 -14.36369 -14.12538 -13.76995 -13.61504 -13.52487 -13.25153 -12.84928 -12.45131 -12.30473 -11.90072 -11.78612 -11.63607 -11.51569 -11.04434 -10.98745 -10.93536 -10.92049 -10.69532 -10.57087 -10.46678 -10.37672 -10.11259 -9.82558 -9.56945 -9.05531 -8.96162 -8.47481 -7.12561 -5.86261 -3.17397 3.06569 3.36259 3.40557 3.42932 3.60588 4.42820 4.54661 4.71708 4.80447 4.86562 5.09322 5.14240 5.23236 5.28616 5.32376 5.43222 5.48573 5.55473 5.63406 5.65552 5.71957 5.73849 5.80696 5.84211 5.88566 5.92575 6.09942 6.11718 6.12027 6.18350 6.27101 6.39962 6.45909 6.58642 6.59620 6.65345 6.77158 6.99728 7.58784 8.04577 8.31810 8.69284 9.42237 9.98404 10.33887 11.35697 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.016287 B = 0.004596 C = 0.003885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1718.754522 B = 6090.633821 C = 7204.939045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C -0.116 4.116 4 C -0.073 4.073 5 H 0.075 0.925 6 C -0.154 4.154 7 C -0.139 4.139 8 C 0.508 3.492 9 O -0.554 6.554 10 N -0.710 5.710 11 C 0.148 3.852 12 C 0.123 3.877 13 N -0.691 5.691 14 C -0.237 4.237 15 H 0.069 0.931 16 C -0.009 4.009 17 N -0.929 5.929 18 Si 0.906 3.094 19 H -0.291 1.291 20 H -0.285 1.285 21 H -0.285 1.285 22 C -0.177 4.177 23 C -0.185 4.185 24 H 0.053 0.947 25 H 0.052 0.948 26 H 0.051 0.949 27 H 0.060 0.940 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.060 0.940 31 H 0.076 0.924 32 H 0.047 0.953 33 H 0.050 0.950 34 H 0.092 0.908 35 H 0.088 0.912 36 H 0.404 0.596 37 H 0.057 0.943 38 H 0.067 0.933 39 H 0.389 0.611 40 H 0.257 0.743 41 H 0.094 0.906 42 H 0.087 0.913 43 H 0.082 0.918 44 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.894 -10.288 -8.044 17.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.154 4.154 4 C -0.092 4.092 5 H 0.094 0.906 6 C -0.211 4.211 7 C -0.180 4.180 8 C 0.294 3.706 9 O -0.433 6.433 10 N -0.360 5.360 11 C 0.021 3.979 12 C 0.029 3.971 13 N -0.332 5.332 14 C -0.368 4.368 15 H 0.087 0.913 16 C -0.206 4.206 17 N -0.576 5.576 18 Si 0.736 3.264 19 H -0.216 1.216 20 H -0.212 1.212 21 H -0.212 1.212 22 C -0.216 4.216 23 C -0.224 4.224 24 H 0.072 0.928 25 H 0.071 0.929 26 H 0.070 0.930 27 H 0.079 0.921 28 H 0.083 0.917 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.094 0.906 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.111 0.889 35 H 0.107 0.893 36 H 0.239 0.761 37 H 0.075 0.925 38 H 0.085 0.915 39 H 0.224 0.776 40 H 0.067 0.933 41 H 0.112 0.888 42 H 0.105 0.895 43 H 0.100 0.900 44 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -10.594 -10.934 -7.926 17.164 hybrid contribution -0.728 1.109 0.679 1.490 sum -11.322 -9.825 -7.247 16.651 Atomic orbital electron populations 1.21783 0.96194 1.01325 1.01686 1.21568 0.95402 0.97141 1.02203 1.21694 0.94989 0.96762 1.01937 1.20864 0.94108 0.94470 0.99743 0.90619 1.21994 1.03344 0.99795 0.95973 1.21764 0.92735 0.99363 1.04093 1.20621 0.89948 0.83828 0.76154 1.90615 1.70573 1.31077 1.51020 1.46018 1.08202 1.08725 1.73021 1.21362 0.79516 0.96056 1.00927 1.20204 1.01562 0.90649 0.84714 1.41771 1.09326 1.55128 1.26932 1.19023 0.90130 1.25984 1.01687 0.91337 1.24777 0.96934 1.01471 0.97375 1.69647 1.23108 1.47226 1.17618 0.86298 0.82128 0.79370 0.78556 1.21643 1.21190 1.21169 1.23132 0.93356 1.02867 1.02211 1.23186 0.96686 1.01302 1.01241 0.92833 0.92897 0.93021 0.92139 0.91700 0.91922 0.92114 0.90552 0.93425 0.93074 0.88944 0.89344 0.76130 0.92496 0.91453 0.77615 0.93294 0.88796 0.89472 0.90002 0.88625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.91 37.15 0.37 -0.82 16 2 C -0.13 -1.12 5.69 -26.73 -0.15 -1.28 16 3 C -0.12 -1.13 4.68 -26.73 -0.13 -1.25 16 4 C -0.07 -0.87 2.04 -90.62 -0.18 -1.06 16 5 H 0.08 0.98 7.96 -51.93 -0.41 0.57 16 6 C -0.15 -2.00 8.69 37.16 0.32 -1.68 16 7 C -0.14 -1.77 5.17 -27.88 -0.14 -1.91 16 8 C 0.51 8.39 7.55 -10.99 -0.08 8.31 16 9 O -0.55 -10.69 13.96 5.56 0.08 -10.61 16 10 N -0.71 -12.09 5.49 -60.29 -0.33 -12.42 16 11 C 0.15 2.71 5.82 -4.04 -0.02 2.69 16 12 C 0.12 2.33 2.15 -131.82 -0.28 2.04 16 13 N -0.69 -16.43 5.48 -47.23 -0.26 -16.69 16 14 C -0.24 -6.11 9.82 -15.06 -0.15 -6.26 16 15 H 0.07 1.67 7.27 -52.49 -0.38 1.29 16 16 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 17 N -0.93 -27.18 13.07 55.49 0.73 -26.45 16 18 Si 0.91 21.46 29.55 -169.99 -5.02 16.44 16 19 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 20 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 21 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 22 C -0.18 -2.87 10.10 -26.73 -0.27 -3.14 16 23 C -0.18 -3.08 9.93 -26.73 -0.27 -3.35 16 24 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.06 0.59 6.57 -51.93 -0.34 0.25 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.08 1.21 5.95 -51.93 -0.31 0.91 16 32 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.05 0.59 6.57 -51.93 -0.34 0.25 16 34 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.40 6.68 7.86 -40.82 -0.32 6.36 16 37 H 0.06 0.98 7.93 -51.93 -0.41 0.57 16 38 H 0.07 1.40 8.14 -51.92 -0.42 0.98 16 39 H 0.39 10.05 8.04 -40.82 -0.33 9.72 16 40 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 41 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 42 H 0.09 1.22 8.07 -51.93 -0.42 0.81 16 43 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 44 H 0.10 1.72 8.14 -51.93 -0.42 1.30 16 LS Contribution 356.28 15.07 5.37 5.37 Total: -1.00 -29.44 356.28 -8.42 -37.86 By element: Atomic # 1 Polarization: 22.45 SS G_CDS: -7.90 Total: 14.56 kcal Atomic # 6 Polarization: -6.97 SS G_CDS: -1.08 Total: -8.05 kcal Atomic # 7 Polarization: -55.69 SS G_CDS: 0.14 Total: -55.56 kcal Atomic # 8 Polarization: -10.69 SS G_CDS: 0.08 Total: -10.61 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -29.44 -8.42 -37.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733239707.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.823 kcal (2) G-P(sol) polarization free energy of solvation -29.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds