Wall clock time and date at job start Mon Mar 30 2020 00:43:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53005 * 109.47353 * 2 1 4 4 C 1.52999 * 109.47540 * 180.02562 * 3 2 1 5 5 H 1.08997 * 109.46972 * 54.99381 * 4 3 2 6 6 C 1.53005 * 109.46783 * 294.99845 * 4 3 2 7 7 C 1.52996 * 109.47220 * 174.99915 * 4 3 2 8 8 C 1.50704 * 109.47023 * 184.99993 * 7 4 3 9 9 O 1.21279 * 119.99832 * 359.97438 * 8 7 4 10 10 N 1.34772 * 119.99933 * 180.02562 * 8 7 4 11 11 C 1.46498 * 120.00063 * 179.97438 * 10 8 7 12 12 C 1.53000 * 109.47537 * 175.81075 * 11 10 8 13 13 N 1.46506 * 115.55089 * 82.27655 * 12 11 10 14 14 C 1.36936 * 120.00209 * 278.08954 * 13 12 11 15 15 H 1.07992 * 119.99847 * 353.92716 * 14 13 12 16 16 C 1.38816 * 119.99793 * 173.92740 * 14 13 12 17 17 N 1.31616 * 119.99879 * 0.02562 * 16 14 13 18 18 Si 1.86794 * 119.99860 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.47146 * 180.02562 * 18 16 14 20 20 H 1.48503 * 109.47347 * 300.00287 * 18 16 14 21 21 H 1.48499 * 109.47032 * 60.00389 * 18 16 14 22 22 C 1.52989 * 117.52068 * 227.98326 * 12 11 10 23 23 C 1.53004 * 60.00317 * 107.47874 * 22 12 11 24 24 H 1.09000 * 109.47326 * 299.99952 * 1 2 3 25 25 H 1.09000 * 109.47481 * 60.00131 * 1 2 3 26 26 H 1.09005 * 109.47028 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47326 * 240.00048 * 2 1 3 28 28 H 1.09000 * 109.47481 * 119.99869 * 2 1 3 29 29 H 1.09000 * 109.46865 * 59.99766 * 3 2 1 30 30 H 1.09000 * 109.46720 * 300.00335 * 3 2 1 31 31 H 1.09002 * 109.46695 * 179.97438 * 6 4 3 32 32 H 1.09001 * 109.47123 * 300.00033 * 6 4 3 33 33 H 1.09002 * 109.47111 * 60.00183 * 6 4 3 34 34 H 1.09001 * 109.46898 * 64.99959 * 7 4 3 35 35 H 1.08996 * 109.47020 * 305.00008 * 7 4 3 36 36 H 0.97001 * 120.00107 * 0.02562 * 10 8 7 37 37 H 1.08997 * 109.47309 * 55.80716 * 11 10 8 38 38 H 1.09007 * 109.46841 * 295.80770 * 11 10 8 39 39 H 0.97001 * 119.99614 * 98.08521 * 13 12 11 40 40 H 0.97002 * 120.00094 * 180.02562 * 17 16 14 41 41 H 1.09001 * 117.50488 * 214.96637 * 22 12 11 42 42 H 1.09004 * 117.50058 * 359.97438 * 22 12 11 43 43 H 1.08995 * 117.50200 * 252.51713 * 23 22 12 44 44 H 1.08999 * 117.51821 * 107.48240 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 1 3.9329 0.8532 -0.8426 6 6 4.0805 0.8328 1.3065 7 6 4.0799 2.8796 -0.1264 8 6 5.5818 2.8706 -0.2505 9 8 6.1849 1.8184 -0.2391 10 7 6.2547 4.0318 -0.3733 11 6 7.7148 4.0231 -0.4934 12 6 8.2161 5.4503 -0.7232 13 7 8.3635 6.2700 0.4820 14 6 7.2718 6.8958 1.0222 15 1 6.3230 6.8665 0.5073 16 6 7.3849 7.5678 2.2316 17 7 8.5415 7.6039 2.8587 18 14 5.8959 8.4220 2.9681 19 1 6.2775 9.0619 4.2527 20 1 5.4038 9.4591 2.0260 21 1 4.8229 7.4246 3.2109 22 6 9.2199 5.6730 -1.8562 23 6 7.7758 6.1554 -2.0077 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6766 1.9563 0.8900 30 1 1.6766 1.9563 -0.8900 31 1 5.1705 0.8324 1.3058 32 1 3.7174 1.4221 2.1485 33 1 3.7172 -0.1910 1.3960 34 1 3.7919 3.4461 0.7592 35 1 3.6449 3.3433 -1.0117 36 1 5.7724 4.8734 -0.3813 37 1 8.0063 3.3956 -1.3355 38 1 8.1524 3.6275 0.4233 39 1 9.2345 6.3695 0.8974 40 1 8.6204 8.0732 3.7040 41 1 9.9899 6.4295 -1.7050 42 1 9.5236 4.8027 -2.4379 43 1 7.1293 5.6025 -2.6891 44 1 7.5955 7.2292 -1.9559 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733239707.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:43:58 Heat of formation + Delta-G solvation = -49.914215 kcal Electronic energy + Delta-G solvation = -20805.033429 eV Core-core repulsion = 17756.572490 eV Total energy + Delta-G solvation = -3048.460939 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.88959 -39.11747 -37.55615 -35.17613 -34.75549 -33.53437 -31.60095 -29.64243 -27.52805 -27.11236 -25.77321 -23.35599 -22.87448 -21.28922 -20.93728 -20.38891 -19.05219 -17.94654 -17.27401 -16.67168 -16.54566 -16.18427 -15.84425 -15.42098 -15.21805 -14.85128 -14.75687 -14.35978 -14.07442 -13.79273 -13.49033 -13.17162 -12.89566 -12.81318 -12.75080 -12.57596 -12.33202 -12.26289 -12.24561 -11.79872 -11.76634 -11.68906 -11.61780 -11.47008 -11.25128 -11.02397 -10.79285 -10.41229 -9.90549 -9.07450 -7.92058 -5.22394 1.48863 1.51117 1.56661 1.76440 2.30815 2.56290 3.13371 3.42719 3.66790 3.81293 3.83401 3.87362 3.99420 4.24406 4.26275 4.29016 4.31936 4.45588 4.58817 4.73106 4.76464 4.77914 4.83581 4.84487 4.94549 4.95463 4.99246 5.04189 5.08540 5.20299 5.21667 5.26033 5.32765 5.40411 5.45412 5.52069 5.56547 5.59070 5.66718 6.28965 6.71380 7.33677 7.38381 8.08447 8.32541 9.31306 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.016287 B = 0.004596 C = 0.003885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1718.754522 B = 6090.633821 C = 7204.939045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.127 4.127 3 C -0.109 4.109 4 C -0.069 4.069 5 H 0.064 0.936 6 C -0.152 4.152 7 C -0.134 4.134 8 C 0.503 3.497 9 O -0.585 6.585 10 N -0.710 5.710 11 C 0.158 3.842 12 C 0.095 3.905 13 N -0.705 5.705 14 C -0.221 4.221 15 H 0.084 0.916 16 C -0.077 4.077 17 N -0.972 5.972 18 Si 0.967 3.033 19 H -0.304 1.304 20 H -0.275 1.275 21 H -0.275 1.275 22 C -0.161 4.161 23 C -0.166 4.166 24 H 0.054 0.946 25 H 0.057 0.943 26 H 0.056 0.944 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.066 0.934 30 H 0.073 0.927 31 H 0.042 0.958 32 H 0.049 0.951 33 H 0.062 0.938 34 H 0.099 0.901 35 H 0.117 0.883 36 H 0.407 0.593 37 H 0.072 0.928 38 H 0.033 0.967 39 H 0.373 0.627 40 H 0.248 0.752 41 H 0.088 0.912 42 H 0.116 0.884 43 H 0.109 0.891 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.216 -10.496 -9.825 19.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.164 4.164 3 C -0.147 4.147 4 C -0.088 4.088 5 H 0.083 0.917 6 C -0.209 4.209 7 C -0.173 4.173 8 C 0.291 3.709 9 O -0.466 6.466 10 N -0.360 5.360 11 C 0.032 3.968 12 C 0.003 3.997 13 N -0.344 5.344 14 C -0.352 4.352 15 H 0.102 0.898 16 C -0.269 4.269 17 N -0.623 5.623 18 Si 0.796 3.204 19 H -0.231 1.231 20 H -0.201 1.201 21 H -0.201 1.201 22 C -0.199 4.199 23 C -0.205 4.205 24 H 0.073 0.927 25 H 0.077 0.923 26 H 0.075 0.925 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.084 0.916 30 H 0.092 0.908 31 H 0.061 0.939 32 H 0.069 0.931 33 H 0.081 0.919 34 H 0.118 0.882 35 H 0.136 0.864 36 H 0.243 0.757 37 H 0.090 0.910 38 H 0.051 0.949 39 H 0.205 0.795 40 H 0.057 0.943 41 H 0.106 0.894 42 H 0.134 0.866 43 H 0.127 0.873 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -12.956 -11.158 -9.764 19.691 hybrid contribution 0.045 1.090 1.146 1.582 sum -12.912 -10.068 -8.618 18.503 Atomic orbital electron populations 1.21764 0.95162 1.01860 1.02017 1.21569 0.96296 0.96608 1.01934 1.21640 0.92844 0.97450 1.02744 1.20842 0.95801 0.93732 0.98462 0.91721 1.21950 1.01086 1.00896 0.96967 1.21828 0.89602 1.00188 1.05719 1.21345 0.91562 0.82988 0.74973 1.90608 1.71629 1.32142 1.52254 1.46044 1.07639 1.09196 1.73142 1.21087 0.80398 0.95576 0.99788 1.20388 1.04991 0.90457 0.83882 1.41927 1.08152 1.55818 1.28464 1.19458 0.90951 1.23830 1.00994 0.89837 1.25559 0.99312 1.03543 0.98513 1.69819 1.25268 1.49301 1.17932 0.85304 0.79311 0.78565 0.77187 1.23092 1.20104 1.20133 1.23235 0.93000 1.03565 1.00145 1.23170 0.97448 1.00580 0.99261 0.92700 0.92350 0.92467 0.92246 0.92225 0.91567 0.90785 0.93893 0.93140 0.91904 0.88234 0.86442 0.75715 0.91007 0.94874 0.79468 0.94298 0.89368 0.86604 0.87291 0.89874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 9.91 71.98 0.71 -1.27 16 2 C -0.13 -1.99 5.69 30.59 0.17 -1.82 16 3 C -0.11 -1.83 4.68 30.60 0.14 -1.68 16 4 C -0.07 -1.54 2.04 -10.79 -0.02 -1.56 16 5 H 0.06 1.59 7.96 -2.39 -0.02 1.57 16 6 C -0.15 -3.86 8.69 71.98 0.63 -3.24 16 7 C -0.13 -3.08 5.17 29.85 0.15 -2.92 16 8 C 0.50 16.06 7.55 87.66 0.66 16.72 16 9 O -0.59 -22.57 13.96 -3.03 -0.04 -22.61 16 10 N -0.71 -23.23 5.49 -463.06 -2.54 -25.77 16 11 C 0.16 5.69 5.82 86.38 0.50 6.19 16 12 C 0.10 3.49 2.15 3.60 0.01 3.50 16 13 N -0.71 -33.66 5.48 -303.35 -1.66 -35.32 16 14 C -0.22 -11.28 9.82 84.03 0.82 -10.45 16 15 H 0.08 3.93 7.27 -2.91 -0.02 3.91 16 16 C -0.08 -4.25 5.50 84.86 0.47 -3.79 16 17 N -0.97 -58.47 13.07 21.65 0.28 -58.19 16 18 Si 0.97 44.18 29.55 68.60 2.03 46.21 16 19 H -0.30 -14.45 7.11 99.48 0.71 -13.74 16 20 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 21 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 22 C -0.16 -4.87 10.10 30.59 0.31 -4.56 16 23 C -0.17 -5.08 9.93 30.60 0.30 -4.78 16 24 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 25 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 26 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 27 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.06 0.99 6.57 -2.39 -0.02 0.98 16 29 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.04 1.38 5.95 -2.39 -0.01 1.37 16 32 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.06 1.40 6.57 -2.39 -0.02 1.39 16 34 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 35 H 0.12 2.05 8.14 -2.39 -0.02 2.03 16 36 H 0.41 12.63 7.86 -92.71 -0.73 11.90 16 37 H 0.07 2.36 7.93 -2.39 -0.02 2.34 16 38 H 0.03 1.41 8.14 -2.38 -0.02 1.39 16 39 H 0.37 19.80 8.04 -92.71 -0.75 19.06 16 40 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 41 H 0.09 2.80 8.14 -2.39 -0.02 2.78 16 42 H 0.12 2.86 8.07 -2.39 -0.02 2.84 16 43 H 0.11 2.77 8.14 -2.39 -0.02 2.76 16 44 H 0.08 2.80 8.14 -2.39 -0.02 2.78 16 Total: -1.00 -64.57 356.28 2.43 -62.14 By element: Atomic # 1 Polarization: 43.71 SS G_CDS: -0.50 Total: 43.21 kcal Atomic # 6 Polarization: -14.53 SS G_CDS: 4.87 Total: -9.67 kcal Atomic # 7 Polarization: -115.36 SS G_CDS: -3.92 Total: -119.28 kcal Atomic # 8 Polarization: -22.57 SS G_CDS: -0.04 Total: -22.61 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Total: -64.57 2.43 -62.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733239707.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.223 kcal (2) G-P(sol) polarization free energy of solvation -64.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds