Wall clock time and date at job start Mon Mar 30 2020 00:34:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47516 * 2 1 4 4 C 1.53000 * 109.47581 * 120.00298 * 2 1 3 5 5 C 1.50691 * 109.47356 * 174.99783 * 4 2 1 6 6 O 1.21284 * 120.00150 * 0.02562 * 5 4 2 7 7 N 1.34781 * 119.99787 * 179.97438 * 5 4 2 8 8 C 1.46505 * 119.99610 * 180.27607 * 7 5 4 9 9 H 1.09000 * 108.44972 * 327.02898 * 8 7 5 10 10 C 1.52576 * 108.50884 * 209.49354 * 8 7 5 11 11 C 1.50880 * 109.35577 * 153.73757 * 10 8 7 12 12 C 1.53945 * 110.09598 * 91.88225 * 11 10 8 13 13 N 1.47599 * 112.14592 * 319.43197 * 12 11 10 14 14 C 1.36933 * 118.64239 * 137.88605 * 13 12 11 15 15 H 1.08006 * 120.00344 * 206.48032 * 14 13 12 16 16 C 1.38810 * 120.00358 * 26.48944 * 14 13 12 17 17 N 1.31621 * 119.99599 * 15.69357 * 16 14 13 18 18 Si 1.86801 * 120.00418 * 195.69333 * 16 14 13 19 19 H 1.48497 * 109.46763 * 359.97438 * 18 16 14 20 20 H 1.48495 * 109.47096 * 119.99890 * 18 16 14 21 21 H 1.48503 * 109.47103 * 239.99958 * 18 16 14 22 22 C 1.44583 * 122.71224 * 317.87091 * 13 12 11 23 23 C 1.47087 * 108.51654 * 84.72602 * 8 7 5 24 24 H 1.09000 * 109.46749 * 299.99770 * 1 2 3 25 25 H 1.08995 * 109.46990 * 59.99700 * 1 2 3 26 26 H 1.08996 * 109.47165 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.46935 * 240.00683 * 2 1 3 28 28 H 1.09002 * 109.47058 * 300.00463 * 3 2 1 29 29 H 1.09001 * 109.46877 * 59.99782 * 3 2 1 30 30 H 1.08997 * 109.47592 * 179.97438 * 3 2 1 31 31 H 1.09001 * 109.46859 * 54.99534 * 4 2 1 32 32 H 1.08997 * 109.46946 * 295.00242 * 4 2 1 33 33 H 0.96999 * 120.00526 * 0.02562 * 7 5 4 34 34 H 1.08995 * 109.48547 * 273.69897 * 10 8 7 35 35 H 1.08998 * 109.48959 * 33.76700 * 10 8 7 36 36 H 1.08997 * 109.36833 * 331.68636 * 11 10 8 37 37 H 1.09005 * 109.36478 * 212.07569 * 11 10 8 38 38 H 1.09005 * 108.94681 * 198.74105 * 12 11 10 39 39 H 1.09005 * 108.94901 * 80.12043 * 12 11 10 40 40 H 0.97002 * 119.99857 * 180.02562 * 17 16 14 41 41 H 1.09006 * 109.44528 * 330.68437 * 22 13 12 42 42 H 1.08996 * 109.44781 * 210.76493 * 22 13 12 43 43 H 1.09005 * 109.32610 * 304.32000 * 23 8 7 44 44 H 1.09011 * 109.32775 * 63.78903 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5419 -0.8294 1.1887 6 8 4.1450 -0.3740 0.2402 7 7 4.2150 -1.4314 2.1893 8 6 5.6756 -1.5312 2.1334 9 1 5.9746 -1.6347 1.0904 10 6 6.1042 -2.7885 2.8840 11 6 7.4236 -3.2730 2.3354 12 6 8.5865 -2.6637 3.1394 13 7 8.3493 -1.2456 3.4731 14 6 8.6705 -0.8043 4.7290 15 1 8.1526 0.0436 5.1524 16 6 9.6620 -1.4466 5.4580 17 7 10.4986 -2.2632 4.8535 18 14 9.8087 -1.1518 7.2967 19 1 8.7568 -0.1977 7.7306 20 1 9.6395 -2.4381 8.0193 21 1 11.1470 -0.5849 7.6019 22 6 7.7922 -0.3032 2.5287 23 6 6.2495 -0.2845 2.6624 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 3.1301 1.4425 0.0005 31 1 1.6054 -1.7198 1.2951 32 1 1.7517 -0.1584 2.1369 33 1 3.7327 -1.7953 2.9482 34 1 6.2131 -2.5597 3.9441 35 1 5.3496 -3.5643 2.7546 36 1 7.5117 -2.9756 1.2905 37 1 7.4667 -4.3599 2.4047 38 1 9.5016 -2.7408 2.5520 39 1 8.7124 -3.2284 4.0631 40 1 11.1912 -2.7124 5.3630 41 1 8.0652 -0.5999 1.5160 42 1 8.1864 0.6920 2.7337 43 1 5.8493 0.5621 2.1044 44 1 5.9796 -0.1805 3.7134 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733755269.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:34:41 Heat of formation + Delta-G solvation = -37.612931 kcal Electronic energy + Delta-G solvation = -21537.175316 eV Core-core repulsion = 18489.247801 eV Total energy + Delta-G solvation = -3047.927515 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.98610 -37.85659 -35.68597 -34.62423 -32.46649 -31.60485 -30.23292 -28.01221 -27.18034 -25.94580 -23.98189 -23.20664 -20.93297 -20.15875 -19.67533 -19.15470 -16.95190 -16.67184 -16.00886 -15.37668 -15.08330 -14.60863 -14.08249 -14.03510 -13.66203 -13.52765 -13.31515 -12.93628 -12.55701 -12.38863 -12.22203 -11.99388 -11.91346 -11.37928 -11.24432 -11.19987 -10.95792 -10.84898 -10.78428 -10.65986 -10.41104 -10.21542 -10.06351 -9.85789 -9.74480 -9.59080 -9.38167 -8.73078 -8.38052 -6.63728 -5.76089 -3.19540 2.85047 3.36529 3.42933 3.45067 3.46831 4.51360 4.65459 4.78077 4.81098 5.15603 5.28614 5.35834 5.37516 5.45728 5.48626 5.52309 5.59647 5.65295 5.76937 5.78402 5.85591 6.01857 6.05190 6.09604 6.23929 6.26360 6.35933 6.43663 6.50257 6.53540 6.68855 6.78848 6.86334 6.89185 6.96863 7.08210 7.45645 7.72783 7.77315 7.84816 8.47203 8.49496 9.26648 9.93783 10.39146 11.31235 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.033997 B = 0.004068 C = 0.003937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.406084 B = 6881.969313 C = 7111.115618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.080 4.080 3 C -0.154 4.154 4 C -0.139 4.139 5 C 0.508 3.492 6 O -0.541 6.541 7 N -0.730 5.730 8 C 0.160 3.840 9 H 0.073 0.927 10 C -0.111 4.111 11 C -0.141 4.141 12 C 0.178 3.822 13 N -0.591 5.591 14 C -0.256 4.256 15 H 0.065 0.935 16 C 0.003 3.997 17 N -0.904 5.904 18 Si 0.899 3.101 19 H -0.278 1.278 20 H -0.290 1.290 21 H -0.291 1.291 22 C 0.162 3.838 23 C -0.153 4.153 24 H 0.054 0.946 25 H 0.056 0.944 26 H 0.053 0.947 27 H 0.076 0.924 28 H 0.049 0.951 29 H 0.046 0.954 30 H 0.077 0.923 31 H 0.088 0.912 32 H 0.090 0.910 33 H 0.395 0.605 34 H 0.079 0.921 35 H 0.049 0.951 36 H 0.047 0.953 37 H 0.055 0.945 38 H 0.024 0.976 39 H 0.074 0.926 40 H 0.252 0.748 41 H 0.033 0.967 42 H 0.048 0.952 43 H 0.051 0.949 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.324 0.453 -6.115 18.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.099 4.099 3 C -0.211 4.211 4 C -0.179 4.179 5 C 0.294 3.706 6 O -0.419 6.419 7 N -0.380 5.380 8 C 0.057 3.943 9 H 0.091 0.909 10 C -0.149 4.149 11 C -0.180 4.180 12 C 0.053 3.947 13 N -0.312 5.312 14 C -0.386 4.386 15 H 0.083 0.917 16 C -0.195 4.195 17 N -0.549 5.549 18 Si 0.729 3.271 19 H -0.203 1.203 20 H -0.217 1.217 21 H -0.218 1.218 22 C 0.033 3.967 23 C -0.194 4.194 24 H 0.073 0.927 25 H 0.075 0.925 26 H 0.072 0.928 27 H 0.095 0.905 28 H 0.068 0.932 29 H 0.065 0.935 30 H 0.096 0.904 31 H 0.107 0.893 32 H 0.108 0.892 33 H 0.228 0.772 34 H 0.098 0.902 35 H 0.067 0.933 36 H 0.066 0.934 37 H 0.074 0.926 38 H 0.043 0.957 39 H 0.093 0.907 40 H 0.062 0.938 41 H 0.052 0.948 42 H 0.066 0.934 43 H 0.070 0.930 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -16.721 0.674 -6.753 18.046 hybrid contribution -0.161 -0.125 1.467 1.481 sum -16.883 0.549 -5.286 17.699 Atomic orbital electron populations 1.21867 0.95241 1.01537 1.01840 1.20844 0.94743 0.97012 0.97313 1.21961 1.03469 0.94886 1.00760 1.21790 0.92717 1.02629 1.00743 1.20645 0.89884 0.77641 0.82402 1.90654 1.70453 1.47278 1.33521 1.46551 1.08822 1.59499 1.23176 1.20001 0.77463 0.96032 1.00788 0.90886 1.21238 0.96994 0.94837 1.01848 1.21980 0.96609 0.99561 0.99860 1.21013 0.91522 0.84030 0.98148 1.43686 1.72815 1.03978 1.10740 1.19251 1.13799 1.14334 0.91210 0.91725 1.25031 0.95605 1.00343 0.98533 1.70085 1.17829 1.32935 1.34004 0.86271 0.77456 0.77446 0.85892 1.20342 1.21652 1.21784 1.20570 0.89583 0.93882 0.92645 1.21846 1.00687 0.95975 1.00884 0.92729 0.92527 0.92815 0.90523 0.93155 0.93497 0.90437 0.89313 0.89192 0.77230 0.90186 0.93266 0.93447 0.92612 0.95747 0.90722 0.93782 0.94830 0.93393 0.93011 0.92084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.19 37.16 0.34 -0.80 16 2 C -0.08 -0.81 2.57 -90.62 -0.23 -1.04 16 3 C -0.15 -1.71 8.93 37.16 0.33 -1.38 16 4 C -0.14 -1.36 5.17 -27.89 -0.14 -1.51 16 5 C 0.51 7.06 7.38 -10.99 -0.08 6.98 16 6 O -0.54 -9.53 13.45 5.55 0.07 -9.45 16 7 N -0.73 -9.94 4.89 -56.81 -0.28 -10.21 16 8 C 0.16 2.68 1.95 -70.98 -0.14 2.54 16 9 H 0.07 1.36 6.65 -51.93 -0.35 1.02 16 10 C -0.11 -1.87 5.00 -28.01 -0.14 -2.01 16 11 C -0.14 -2.61 5.71 -27.30 -0.16 -2.77 16 12 C 0.18 4.17 4.67 -2.95 -0.01 4.16 16 13 N -0.59 -14.43 2.27 -172.09 -0.39 -14.82 16 14 C -0.26 -6.88 9.44 -15.06 -0.14 -7.02 16 15 H 0.07 1.73 7.88 -52.48 -0.41 1.31 16 16 C 0.00 0.09 4.87 -17.43 -0.08 0.00 16 17 N -0.90 -25.92 11.01 55.49 0.61 -25.31 16 18 Si 0.90 21.47 29.58 -169.99 -5.03 16.44 16 19 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 20 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 21 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 22 C 0.16 3.47 5.66 -4.09 -0.02 3.45 16 23 C -0.15 -2.83 5.19 -28.59 -0.15 -2.98 16 24 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 26 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.08 0.88 7.96 -51.93 -0.41 0.47 16 28 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.08 1.08 5.95 -51.93 -0.31 0.78 16 31 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.39 4.32 8.61 -40.82 -0.35 3.96 16 34 H 0.08 1.52 7.48 -51.93 -0.39 1.13 16 35 H 0.05 0.71 8.05 -51.93 -0.42 0.30 16 36 H 0.05 0.86 7.31 -51.93 -0.38 0.48 16 37 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.02 0.63 8.03 -51.93 -0.42 0.21 16 39 H 0.07 1.94 6.33 -51.93 -0.33 1.61 16 40 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 41 H 0.03 0.71 8.06 -51.93 -0.42 0.29 16 42 H 0.05 1.05 7.99 -51.93 -0.41 0.64 16 43 H 0.05 0.96 7.92 -51.93 -0.41 0.55 16 44 H 0.06 1.19 8.14 -51.92 -0.42 0.76 16 LS Contribution 338.08 15.07 5.09 5.09 Total: -1.00 -30.06 338.08 -8.50 -38.56 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: -7.95 Total: 2.07 kcal Atomic # 6 Polarization: -1.73 SS G_CDS: -0.63 Total: -2.37 kcal Atomic # 7 Polarization: -50.29 SS G_CDS: -0.06 Total: -50.35 kcal Atomic # 8 Polarization: -9.53 SS G_CDS: 0.07 Total: -9.45 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.03 Total: 16.44 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -30.06 -8.50 -38.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733755269.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.944 kcal (2) G-P(sol) polarization free energy of solvation -30.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds