Wall clock time and date at job start Mon Mar 30 2020 00:34:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47516 * 2 1 4 4 C 1.53000 * 109.47581 * 120.00298 * 2 1 3 5 5 C 1.50691 * 109.47356 * 174.99783 * 4 2 1 6 6 O 1.21284 * 120.00150 * 0.02562 * 5 4 2 7 7 N 1.34781 * 119.99787 * 179.97438 * 5 4 2 8 8 C 1.46505 * 119.99610 * 180.27607 * 7 5 4 9 9 H 1.09000 * 108.44972 * 327.02898 * 8 7 5 10 10 C 1.52576 * 108.50884 * 209.49354 * 8 7 5 11 11 C 1.50880 * 109.35577 * 153.73757 * 10 8 7 12 12 C 1.53945 * 110.09598 * 91.88225 * 11 10 8 13 13 N 1.47599 * 112.14592 * 319.43197 * 12 11 10 14 14 C 1.36933 * 118.64239 * 137.88605 * 13 12 11 15 15 H 1.08006 * 120.00344 * 206.48032 * 14 13 12 16 16 C 1.38810 * 120.00358 * 26.48944 * 14 13 12 17 17 N 1.31621 * 119.99599 * 15.69357 * 16 14 13 18 18 Si 1.86801 * 120.00418 * 195.69333 * 16 14 13 19 19 H 1.48497 * 109.46763 * 359.97438 * 18 16 14 20 20 H 1.48495 * 109.47096 * 119.99890 * 18 16 14 21 21 H 1.48503 * 109.47103 * 239.99958 * 18 16 14 22 22 C 1.44583 * 122.71224 * 317.87091 * 13 12 11 23 23 C 1.47087 * 108.51654 * 84.72602 * 8 7 5 24 24 H 1.09000 * 109.46749 * 299.99770 * 1 2 3 25 25 H 1.08995 * 109.46990 * 59.99700 * 1 2 3 26 26 H 1.08996 * 109.47165 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.46935 * 240.00683 * 2 1 3 28 28 H 1.09002 * 109.47058 * 300.00463 * 3 2 1 29 29 H 1.09001 * 109.46877 * 59.99782 * 3 2 1 30 30 H 1.08997 * 109.47592 * 179.97438 * 3 2 1 31 31 H 1.09001 * 109.46859 * 54.99534 * 4 2 1 32 32 H 1.08997 * 109.46946 * 295.00242 * 4 2 1 33 33 H 0.96999 * 120.00526 * 0.02562 * 7 5 4 34 34 H 1.08995 * 109.48547 * 273.69897 * 10 8 7 35 35 H 1.08998 * 109.48959 * 33.76700 * 10 8 7 36 36 H 1.08997 * 109.36833 * 331.68636 * 11 10 8 37 37 H 1.09005 * 109.36478 * 212.07569 * 11 10 8 38 38 H 1.09005 * 108.94681 * 198.74105 * 12 11 10 39 39 H 1.09005 * 108.94901 * 80.12043 * 12 11 10 40 40 H 0.97002 * 119.99857 * 180.02562 * 17 16 14 41 41 H 1.09006 * 109.44528 * 330.68437 * 22 13 12 42 42 H 1.08996 * 109.44781 * 210.76493 * 22 13 12 43 43 H 1.09005 * 109.32610 * 304.32000 * 23 8 7 44 44 H 1.09011 * 109.32775 * 63.78903 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5419 -0.8294 1.1887 6 8 4.1450 -0.3740 0.2402 7 7 4.2150 -1.4314 2.1893 8 6 5.6756 -1.5312 2.1334 9 1 5.9746 -1.6347 1.0904 10 6 6.1042 -2.7885 2.8840 11 6 7.4236 -3.2730 2.3354 12 6 8.5865 -2.6637 3.1394 13 7 8.3493 -1.2456 3.4731 14 6 8.6705 -0.8043 4.7290 15 1 8.1526 0.0436 5.1524 16 6 9.6620 -1.4466 5.4580 17 7 10.4986 -2.2632 4.8535 18 14 9.8087 -1.1518 7.2967 19 1 8.7568 -0.1977 7.7306 20 1 9.6395 -2.4381 8.0193 21 1 11.1470 -0.5849 7.6019 22 6 7.7922 -0.3032 2.5287 23 6 6.2495 -0.2845 2.6624 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 3.1301 1.4425 0.0005 31 1 1.6054 -1.7198 1.2951 32 1 1.7517 -0.1584 2.1369 33 1 3.7327 -1.7953 2.9482 34 1 6.2131 -2.5597 3.9441 35 1 5.3496 -3.5643 2.7546 36 1 7.5117 -2.9756 1.2905 37 1 7.4667 -4.3599 2.4047 38 1 9.5016 -2.7408 2.5520 39 1 8.7124 -3.2284 4.0631 40 1 11.1912 -2.7124 5.3630 41 1 8.0652 -0.5999 1.5160 42 1 8.1864 0.6920 2.7337 43 1 5.8493 0.5621 2.1044 44 1 5.9796 -0.1805 3.7134 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733755269.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:34:40 Heat of formation + Delta-G solvation = -55.377022 kcal Electronic energy + Delta-G solvation = -21537.945625 eV Core-core repulsion = 18489.247801 eV Total energy + Delta-G solvation = -3048.697824 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.18045 -39.34173 -36.79359 -35.99977 -34.09097 -33.32917 -31.87055 -29.05319 -27.91878 -27.69681 -25.68179 -24.92345 -22.03855 -21.51521 -21.06212 -20.53312 -18.57910 -18.01501 -17.27846 -16.97072 -16.41149 -15.78871 -15.67766 -15.36930 -15.27230 -14.72217 -14.64987 -14.34245 -14.10255 -13.61237 -13.35396 -13.09539 -13.01988 -12.98051 -12.75406 -12.69187 -12.37627 -12.12218 -12.06180 -11.98804 -11.75009 -11.72139 -11.54505 -11.50748 -11.46333 -11.34766 -10.58706 -10.43346 -9.97810 -8.65248 -7.84041 -5.30691 1.46601 1.48862 1.58957 1.78413 2.33262 2.52953 3.29706 3.66178 3.75916 3.86118 3.97276 4.06352 4.14104 4.34091 4.42260 4.44960 4.45634 4.68501 4.73681 4.75416 4.78052 4.78886 4.88160 4.97119 5.00171 5.07549 5.11924 5.15472 5.16075 5.25051 5.33037 5.34615 5.48674 5.50353 5.55611 5.58677 5.67393 5.69712 5.82284 6.42244 6.71787 7.19975 7.41974 7.95274 8.35247 9.21331 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.033997 B = 0.004068 C = 0.003937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.406084 B = 6881.969313 C = 7111.115618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.081 4.081 3 C -0.153 4.153 4 C -0.130 4.130 5 C 0.503 3.497 6 O -0.583 6.583 7 N -0.721 5.721 8 C 0.167 3.833 9 H 0.056 0.944 10 C -0.100 4.100 11 C -0.130 4.130 12 C 0.188 3.812 13 N -0.602 5.602 14 C -0.262 4.262 15 H 0.064 0.936 16 C -0.048 4.048 17 N -0.936 5.936 18 Si 0.964 3.036 19 H -0.267 1.267 20 H -0.288 1.288 21 H -0.296 1.296 22 C 0.159 3.841 23 C -0.132 4.132 24 H 0.064 0.936 25 H 0.057 0.943 26 H 0.065 0.935 27 H 0.057 0.943 28 H 0.054 0.946 29 H 0.057 0.943 30 H 0.043 0.957 31 H 0.117 0.883 32 H 0.111 0.889 33 H 0.412 0.588 34 H 0.060 0.940 35 H 0.083 0.917 36 H 0.051 0.949 37 H 0.077 0.923 38 H -0.010 1.010 39 H 0.046 0.954 40 H 0.249 0.751 41 H 0.033 0.967 42 H 0.036 0.964 43 H 0.051 0.949 44 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.307 0.080 -5.468 21.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.100 4.100 3 C -0.210 4.210 4 C -0.169 4.169 5 C 0.291 3.709 6 O -0.463 6.463 7 N -0.372 5.372 8 C 0.063 3.937 9 H 0.074 0.926 10 C -0.138 4.138 11 C -0.169 4.169 12 C 0.063 3.937 13 N -0.324 5.324 14 C -0.393 4.393 15 H 0.082 0.918 16 C -0.243 4.243 17 N -0.582 5.582 18 Si 0.793 3.207 19 H -0.192 1.192 20 H -0.215 1.215 21 H -0.223 1.223 22 C 0.031 3.969 23 C -0.173 4.173 24 H 0.083 0.917 25 H 0.076 0.924 26 H 0.084 0.916 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.062 0.938 31 H 0.135 0.865 32 H 0.130 0.870 33 H 0.248 0.752 34 H 0.079 0.921 35 H 0.102 0.898 36 H 0.069 0.931 37 H 0.095 0.905 38 H 0.008 0.992 39 H 0.064 0.936 40 H 0.058 0.942 41 H 0.052 0.948 42 H 0.055 0.945 43 H 0.070 0.930 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -19.756 0.307 -6.100 20.679 hybrid contribution 0.798 0.055 1.188 1.432 sum -18.958 0.362 -4.912 19.587 Atomic orbital electron populations 1.21807 0.92931 1.02599 1.02493 1.20848 0.96540 0.95883 0.96761 1.21931 1.01260 0.96205 1.01610 1.21830 0.89157 1.04585 1.01365 1.21439 0.91611 0.76373 0.81436 1.90653 1.71654 1.48833 1.35146 1.46349 1.07323 1.59584 1.23992 1.19654 0.79580 0.95038 0.99435 0.92562 1.21117 0.96795 0.95686 1.00229 1.21837 0.95508 1.00512 0.99066 1.20798 0.92454 0.83630 0.96842 1.43862 1.73043 1.04832 1.10657 1.19517 1.13412 1.14131 0.92216 0.91806 1.25757 0.95520 1.00610 1.02458 1.70246 1.18508 1.34139 1.35315 0.85254 0.77157 0.77340 0.80968 1.19165 1.21506 1.22296 1.20659 0.91573 0.92691 0.91993 1.21574 0.98063 0.97225 1.00478 0.91651 0.92363 0.91551 0.92468 0.92660 0.92352 0.93755 0.86477 0.87046 0.75229 0.92097 0.89803 0.93051 0.90472 0.99199 0.93551 0.94226 0.94846 0.94522 0.93049 0.92718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.71 9.19 71.98 0.66 -1.05 16 2 C -0.08 -1.47 2.57 -10.79 -0.03 -1.50 16 3 C -0.15 -3.22 8.93 71.98 0.64 -2.58 16 4 C -0.13 -2.12 5.17 29.85 0.15 -1.96 16 5 C 0.50 12.98 7.38 87.65 0.65 13.63 16 6 O -0.58 -20.26 13.45 -3.04 -0.04 -20.30 16 7 N -0.72 -17.82 4.89 -452.04 -2.21 -20.02 16 8 C 0.17 5.38 1.95 43.01 0.08 5.46 16 9 H 0.06 2.05 6.65 -2.39 -0.02 2.03 16 10 C -0.10 -3.18 5.00 29.76 0.15 -3.03 16 11 C -0.13 -4.71 5.71 30.22 0.17 -4.54 16 12 C 0.19 9.02 4.67 86.49 0.40 9.42 16 13 N -0.60 -29.98 2.27 -698.37 -1.59 -31.56 16 14 C -0.26 -14.28 9.44 84.03 0.79 -13.48 16 15 H 0.06 3.42 7.88 -2.91 -0.02 3.40 16 16 C -0.05 -2.67 4.87 84.86 0.41 -2.26 16 17 N -0.94 -55.13 11.01 21.65 0.24 -54.89 16 18 Si 0.96 44.56 29.58 68.60 2.03 46.58 16 19 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 20 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 21 H -0.30 -13.82 7.11 99.48 0.71 -13.11 16 22 C 0.16 6.92 5.66 87.37 0.49 7.41 16 23 C -0.13 -4.85 5.19 29.39 0.15 -4.70 16 24 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 25 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 26 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 27 H 0.06 1.25 7.96 -2.38 -0.02 1.24 16 28 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.04 1.24 5.95 -2.39 -0.01 1.22 16 31 H 0.12 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.41 7.52 8.61 -92.71 -0.80 6.72 16 34 H 0.06 2.22 7.48 -2.39 -0.02 2.20 16 35 H 0.08 2.12 8.05 -2.39 -0.02 2.10 16 36 H 0.05 1.83 7.31 -2.39 -0.02 1.81 16 37 H 0.08 2.47 8.14 -2.38 -0.02 2.45 16 38 H -0.01 -0.54 8.03 -2.38 -0.02 -0.56 16 39 H 0.05 2.47 6.33 -2.38 -0.02 2.46 16 40 H 0.25 14.18 8.31 -92.71 -0.77 13.41 16 41 H 0.03 1.44 8.06 -2.38 -0.02 1.42 16 42 H 0.04 1.64 7.99 -2.39 -0.02 1.63 16 43 H 0.05 1.89 7.92 -2.38 -0.02 1.87 16 44 H 0.05 2.08 8.14 -2.38 -0.02 2.06 16 Total: -1.00 -67.11 338.08 3.33 -63.78 By element: Atomic # 1 Polarization: 15.42 SS G_CDS: 0.16 Total: 15.58 kcal Atomic # 6 Polarization: -3.92 SS G_CDS: 4.74 Total: 0.82 kcal Atomic # 7 Polarization: -102.92 SS G_CDS: -3.56 Total: -106.48 kcal Atomic # 8 Polarization: -20.26 SS G_CDS: -0.04 Total: -20.30 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.58 kcal Total: -67.11 3.33 -63.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733755269.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.405 kcal (2) G-P(sol) polarization free energy of solvation -67.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds