Wall clock time and date at job start Mon Mar 30 2020 00:27:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36931 * 120.00221 * 2 1 4 4 H 1.07993 * 120.00521 * 146.23593 * 3 2 1 5 5 C 1.38816 * 119.99863 * 326.51318 * 3 2 1 6 6 N 1.31621 * 119.99851 * 4.11412 * 5 3 2 7 7 Si 1.86800 * 120.00121 * 184.11716 * 5 3 2 8 8 H 1.48499 * 109.47053 * 64.99801 * 7 5 3 9 9 H 1.48503 * 109.47098 * 184.99716 * 7 5 3 10 10 H 1.48495 * 109.46743 * 304.99693 * 7 5 3 11 11 C 1.46504 * 119.99738 * 179.97438 * 2 1 3 12 12 C 1.53010 * 109.46900 * 264.33251 * 11 2 1 13 13 H 1.09002 * 109.87214 * 304.49732 * 12 11 2 14 14 C 1.54323 * 109.88299 * 65.51186 * 12 11 2 15 15 C 1.55153 * 102.94182 * 141.60763 * 14 12 11 16 16 C 1.54915 * 101.58491 * 324.50007 * 15 14 12 17 17 N 1.47025 * 109.87980 * 183.32411 * 12 11 2 18 18 C 1.34777 * 125.65026 * 61.59164 * 17 12 11 19 19 O 1.21283 * 119.99862 * 4.26220 * 18 17 12 20 20 C 1.50700 * 119.99658 * 184.26015 * 18 17 12 21 21 C 1.53001 * 109.46906 * 170.72004 * 20 18 17 22 22 C 1.52998 * 109.47021 * 290.71561 * 20 18 17 23 23 C 1.52997 * 109.47285 * 50.72123 * 20 18 17 24 24 H 1.09007 * 109.46938 * 94.56634 * 1 2 3 25 25 H 1.09000 * 109.47355 * 214.56234 * 1 2 3 26 26 H 1.08996 * 109.47261 * 334.56407 * 1 2 3 27 27 H 0.97001 * 120.00226 * 180.02562 * 6 5 3 28 28 H 1.08996 * 109.47222 * 24.33244 * 11 2 1 29 29 H 1.09003 * 109.46936 * 144.33453 * 11 2 1 30 30 H 1.08999 * 110.72122 * 259.97152 * 14 12 11 31 31 H 1.09003 * 110.72027 * 23.24670 * 14 12 11 32 32 H 1.09006 * 111.00272 * 82.56897 * 15 14 12 33 33 H 1.08999 * 111.00886 * 206.38800 * 15 14 12 34 34 H 1.08995 * 110.36848 * 155.84238 * 16 15 14 35 35 H 1.08999 * 110.36608 * 278.05969 * 16 15 14 36 36 H 1.09006 * 109.46936 * 64.93453 * 21 20 18 37 37 H 1.08997 * 109.47396 * 184.93551 * 21 20 18 38 38 H 1.09004 * 109.46770 * 304.93881 * 21 20 18 39 39 H 1.09003 * 109.47034 * 70.68492 * 22 20 18 40 40 H 1.08997 * 109.47194 * 190.68263 * 22 20 18 41 41 H 1.08999 * 109.47631 * 310.68126 * 22 20 18 42 42 H 1.08996 * 109.47460 * 59.99627 * 23 20 18 43 43 H 1.08998 * 109.46947 * 180.02562 * 23 20 18 44 44 H 1.09008 * 109.46989 * 299.99633 * 23 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.0930 1.2648 0.5198 5 6 1.6284 2.2882 -0.6633 6 7 0.4393 2.2178 -1.2232 7 14 2.6146 3.8717 -0.7614 8 1 3.8453 3.6397 -1.5595 9 1 1.7949 4.9260 -1.4108 10 1 2.9876 4.3080 0.6081 11 6 2.1975 -1.2688 0.0006 12 6 2.5758 -1.6386 1.4363 13 1 3.1384 -0.8241 1.8927 14 6 1.3010 -1.9213 2.2588 15 6 1.7227 -3.1167 3.1535 16 6 2.6558 -3.9046 2.2005 17 7 3.3798 -2.8695 1.4402 18 6 4.5795 -3.0261 0.8462 19 8 5.1185 -2.0812 0.3099 20 6 5.2510 -4.3752 0.8485 21 6 6.4692 -4.3400 -0.0766 22 6 5.7000 -4.7189 2.2701 23 6 4.2657 -5.4362 0.3542 24 1 -0.3633 -0.0818 -1.0245 25 1 -0.3634 -0.8463 0.5830 26 1 -0.3633 0.9280 0.4414 27 1 0.0752 2.9880 -1.6870 28 1 1.5682 -2.0518 -0.4225 29 1 3.1022 -1.1663 -0.5987 30 1 1.0361 -1.0576 2.8687 31 1 0.4747 -2.2013 1.6054 32 1 2.2644 -2.7730 4.0348 33 1 0.8578 -3.7159 3.4381 34 1 3.3554 -4.5139 2.7725 35 1 2.0698 -4.5312 1.5281 36 1 7.2096 -3.6475 0.3239 37 1 6.9034 -5.3375 -0.1436 38 1 6.1623 -4.0099 -1.0690 39 1 4.8259 -4.9303 2.8861 40 1 6.3471 -5.5956 2.2448 41 1 6.2468 -3.8759 2.6924 42 1 3.9458 -5.1913 -0.6586 43 1 4.7513 -6.4120 0.3563 44 1 3.3978 -5.4612 1.0133 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733939031.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:27:15 Heat of formation + Delta-G solvation = -12.295231 kcal Electronic energy + Delta-G solvation = -22222.575773 eV Core-core repulsion = 19175.746116 eV Total energy + Delta-G solvation = -3046.829657 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.34214 -37.56350 -35.67190 -35.01959 -31.51948 -31.15637 -29.06687 -27.49378 -27.10610 -25.99215 -25.16355 -23.80169 -21.43731 -21.00682 -19.99423 -18.37924 -16.57978 -16.45562 -15.95133 -15.14298 -14.70270 -14.67157 -13.96728 -13.79275 -13.55777 -13.31160 -13.16178 -13.09307 -12.56332 -12.34691 -12.26436 -12.00076 -11.84628 -11.67009 -11.53683 -11.24572 -11.09200 -10.95550 -10.81895 -10.74130 -10.55690 -10.50828 -10.33987 -9.99713 -9.87651 -9.69029 -9.20864 -8.44322 -8.23045 -6.47018 -5.68793 -3.19768 2.98488 3.29275 3.45923 3.49826 3.53721 4.47242 4.58982 4.67989 4.72210 4.84625 5.00000 5.05479 5.31229 5.36214 5.42648 5.48741 5.54634 5.55431 5.65987 5.74035 5.76607 5.81954 5.85652 5.89046 5.93341 6.04039 6.09683 6.16935 6.28273 6.31723 6.34341 6.56563 6.68885 6.84042 6.94585 7.14897 7.46708 7.79711 7.92190 7.93391 8.54138 8.60275 9.36526 9.94740 10.49092 11.38066 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.022666 B = 0.005681 C = 0.004974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.032533 B = 4927.276272 C = 5627.975050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.163 3.837 2 N -0.596 5.596 3 C -0.254 4.254 4 H 0.063 0.937 5 C 0.011 3.989 6 N -0.907 5.907 7 Si 0.901 3.099 8 H -0.283 1.283 9 H -0.291 1.291 10 H -0.283 1.283 11 C 0.148 3.852 12 C 0.115 3.885 13 H 0.073 0.927 14 C -0.114 4.114 15 C -0.138 4.138 16 C 0.092 3.908 17 N -0.610 5.610 18 C 0.532 3.468 19 O -0.529 6.529 20 C -0.083 4.083 21 C -0.126 4.126 22 C -0.143 4.143 23 C -0.154 4.154 24 H 0.014 0.986 25 H -0.008 1.008 26 H 0.057 0.943 27 H 0.253 0.747 28 H 0.033 0.967 29 H 0.055 0.945 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.070 0.930 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.068 0.932 36 H 0.061 0.939 37 H 0.057 0.943 38 H 0.062 0.938 39 H 0.065 0.935 40 H 0.065 0.935 41 H 0.059 0.941 42 H 0.060 0.940 43 H 0.062 0.938 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.603 -17.659 8.379 20.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.319 5.319 3 C -0.384 4.384 4 H 0.081 0.919 5 C -0.187 4.187 6 N -0.552 5.552 7 Si 0.731 3.269 8 H -0.209 1.209 9 H -0.217 1.217 10 H -0.209 1.209 11 C 0.019 3.981 12 C 0.010 3.990 13 H 0.091 0.909 14 C -0.152 4.152 15 C -0.176 4.176 16 C -0.031 4.031 17 N -0.345 5.345 18 C 0.319 3.681 19 O -0.405 6.405 20 C -0.087 4.087 21 C -0.183 4.183 22 C -0.200 4.200 23 C -0.211 4.211 24 H 0.032 0.968 25 H 0.011 0.989 26 H 0.075 0.925 27 H 0.063 0.937 28 H 0.052 0.948 29 H 0.073 0.927 30 H 0.097 0.903 31 H 0.094 0.906 32 H 0.089 0.911 33 H 0.096 0.904 34 H 0.096 0.904 35 H 0.086 0.914 36 H 0.081 0.919 37 H 0.076 0.924 38 H 0.081 0.919 39 H 0.084 0.916 40 H 0.084 0.916 41 H 0.078 0.922 42 H 0.079 0.921 43 H 0.081 0.919 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 4.845 -16.991 7.932 19.368 hybrid contribution 0.413 0.923 -0.099 1.016 sum 5.258 -16.068 7.833 18.633 Atomic orbital electron populations 1.20869 0.82942 0.97082 0.97288 1.43700 1.01491 1.00362 1.86349 1.19080 1.04410 0.88118 1.26806 0.91880 1.25296 0.96951 0.99164 0.97339 1.70016 1.16081 1.29959 1.39100 0.86395 0.79769 0.82903 0.77858 1.20901 1.21664 1.20882 1.20987 0.96375 0.88538 0.92157 1.22563 0.90396 0.85443 1.00606 0.90933 1.22631 0.97329 0.97650 0.97631 1.22847 0.99052 0.97777 0.97932 1.22640 0.95080 0.91479 0.93910 1.48616 1.18707 1.14055 1.53087 1.20162 0.79795 0.90109 0.78022 1.90743 1.63312 1.41886 1.44546 1.20749 0.96910 0.93219 0.97787 1.21650 0.96049 1.01277 0.99373 1.21968 1.01667 1.02057 0.94335 1.22148 0.99125 0.97591 1.02237 0.96816 0.98942 0.92464 0.93707 0.94833 0.92705 0.90322 0.90581 0.91087 0.90376 0.90396 0.91373 0.91947 0.92363 0.91918 0.91638 0.91613 0.92178 0.92083 0.91864 0.91003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.07 8.69 59.85 0.52 4.59 16 2 N -0.60 -15.63 2.76 -181.11 -0.50 -16.13 16 3 C -0.25 -7.38 9.55 -15.06 -0.14 -7.53 16 4 H 0.06 1.86 7.83 -52.49 -0.41 1.45 16 5 C 0.01 0.32 5.33 -17.43 -0.09 0.23 16 6 N -0.91 -27.21 10.65 55.49 0.59 -26.62 16 7 Si 0.90 22.91 29.56 -169.99 -5.02 17.88 16 8 H -0.28 -7.24 7.11 56.52 0.40 -6.84 16 9 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 10 H -0.28 -7.05 7.11 56.52 0.40 -6.64 16 11 C 0.15 3.36 5.11 -4.03 -0.02 3.34 16 12 C 0.11 2.18 3.07 -66.95 -0.21 1.97 16 13 H 0.07 1.60 8.14 -51.93 -0.42 1.18 16 14 C -0.11 -1.78 5.62 -24.90 -0.14 -1.92 16 15 C -0.14 -1.56 7.08 -24.58 -0.17 -1.73 16 16 C 0.09 1.04 4.91 -2.52 -0.01 1.03 16 17 N -0.61 -9.65 3.04 -163.00 -0.50 -10.15 16 18 C 0.53 8.98 6.30 -10.99 -0.07 8.91 16 19 O -0.53 -11.51 15.17 5.56 0.08 -11.43 16 20 C -0.08 -1.01 0.75 -155.66 -0.12 -1.12 16 21 C -0.13 -1.51 7.75 37.16 0.29 -1.22 16 22 C -0.14 -1.38 8.31 37.16 0.31 -1.07 16 23 C -0.15 -1.53 8.15 37.16 0.30 -1.23 16 24 H 0.01 0.37 7.79 -51.93 -0.40 -0.04 16 25 H -0.01 -0.16 5.99 -51.93 -0.31 -0.48 16 26 H 0.06 1.55 6.94 -51.93 -0.36 1.18 16 27 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 28 H 0.03 0.72 7.95 -51.93 -0.41 0.31 16 29 H 0.05 1.41 6.84 -51.93 -0.36 1.06 16 30 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 31 H 0.08 1.21 6.18 -51.93 -0.32 0.89 16 32 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.08 0.71 4.53 -51.93 -0.24 0.48 16 35 H 0.07 0.70 6.89 -51.93 -0.36 0.35 16 36 H 0.06 0.80 8.12 -51.93 -0.42 0.38 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.06 0.84 8.09 -51.93 -0.42 0.42 16 39 H 0.06 0.55 5.15 -51.93 -0.27 0.29 16 40 H 0.06 0.51 8.11 -51.93 -0.42 0.09 16 41 H 0.06 0.65 8.10 -51.93 -0.42 0.23 16 42 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 43 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 44 H 0.07 0.65 4.19 -51.92 -0.22 0.43 16 LS Contribution 331.16 15.07 4.99 4.99 Total: -1.00 -33.12 331.16 -7.34 -40.46 By element: Atomic # 1 Polarization: 4.19 SS G_CDS: -7.43 Total: -3.24 kcal Atomic # 6 Polarization: 3.79 SS G_CDS: 0.44 Total: 4.24 kcal Atomic # 7 Polarization: -52.49 SS G_CDS: -0.40 Total: -52.90 kcal Atomic # 8 Polarization: -11.51 SS G_CDS: 0.08 Total: -11.43 kcal Atomic # 14 Polarization: 22.91 SS G_CDS: -5.02 Total: 17.88 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -33.12 -7.34 -40.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733939031.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.166 kcal (2) G-P(sol) polarization free energy of solvation -33.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds