Wall clock time and date at job start Mon Mar 30 2020 00:27:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36931 * 120.00221 * 2 1 4 4 H 1.07993 * 120.00521 * 146.23593 * 3 2 1 5 5 C 1.38816 * 119.99863 * 326.51318 * 3 2 1 6 6 N 1.31621 * 119.99851 * 4.11412 * 5 3 2 7 7 Si 1.86800 * 120.00121 * 184.11716 * 5 3 2 8 8 H 1.48499 * 109.47053 * 64.99801 * 7 5 3 9 9 H 1.48503 * 109.47098 * 184.99716 * 7 5 3 10 10 H 1.48495 * 109.46743 * 304.99693 * 7 5 3 11 11 C 1.46504 * 119.99738 * 179.97438 * 2 1 3 12 12 C 1.53010 * 109.46900 * 264.33251 * 11 2 1 13 13 H 1.09002 * 109.87214 * 304.49732 * 12 11 2 14 14 C 1.54323 * 109.88299 * 65.51186 * 12 11 2 15 15 C 1.55153 * 102.94182 * 141.60763 * 14 12 11 16 16 C 1.54915 * 101.58491 * 324.50007 * 15 14 12 17 17 N 1.47025 * 109.87980 * 183.32411 * 12 11 2 18 18 C 1.34777 * 125.65026 * 61.59164 * 17 12 11 19 19 O 1.21283 * 119.99862 * 4.26220 * 18 17 12 20 20 C 1.50700 * 119.99658 * 184.26015 * 18 17 12 21 21 C 1.53001 * 109.46906 * 170.72004 * 20 18 17 22 22 C 1.52998 * 109.47021 * 290.71561 * 20 18 17 23 23 C 1.52997 * 109.47285 * 50.72123 * 20 18 17 24 24 H 1.09007 * 109.46938 * 94.56634 * 1 2 3 25 25 H 1.09000 * 109.47355 * 214.56234 * 1 2 3 26 26 H 1.08996 * 109.47261 * 334.56407 * 1 2 3 27 27 H 0.97001 * 120.00226 * 180.02562 * 6 5 3 28 28 H 1.08996 * 109.47222 * 24.33244 * 11 2 1 29 29 H 1.09003 * 109.46936 * 144.33453 * 11 2 1 30 30 H 1.08999 * 110.72122 * 259.97152 * 14 12 11 31 31 H 1.09003 * 110.72027 * 23.24670 * 14 12 11 32 32 H 1.09006 * 111.00272 * 82.56897 * 15 14 12 33 33 H 1.08999 * 111.00886 * 206.38800 * 15 14 12 34 34 H 1.08995 * 110.36848 * 155.84238 * 16 15 14 35 35 H 1.08999 * 110.36608 * 278.05969 * 16 15 14 36 36 H 1.09006 * 109.46936 * 64.93453 * 21 20 18 37 37 H 1.08997 * 109.47396 * 184.93551 * 21 20 18 38 38 H 1.09004 * 109.46770 * 304.93881 * 21 20 18 39 39 H 1.09003 * 109.47034 * 70.68492 * 22 20 18 40 40 H 1.08997 * 109.47194 * 190.68263 * 22 20 18 41 41 H 1.08999 * 109.47631 * 310.68126 * 22 20 18 42 42 H 1.08996 * 109.47460 * 59.99627 * 23 20 18 43 43 H 1.08998 * 109.46947 * 180.02562 * 23 20 18 44 44 H 1.09008 * 109.46989 * 299.99633 * 23 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.0930 1.2648 0.5198 5 6 1.6284 2.2882 -0.6633 6 7 0.4393 2.2178 -1.2232 7 14 2.6146 3.8717 -0.7614 8 1 3.8453 3.6397 -1.5595 9 1 1.7949 4.9260 -1.4108 10 1 2.9876 4.3080 0.6081 11 6 2.1975 -1.2688 0.0006 12 6 2.5758 -1.6386 1.4363 13 1 3.1384 -0.8241 1.8927 14 6 1.3010 -1.9213 2.2588 15 6 1.7227 -3.1167 3.1535 16 6 2.6558 -3.9046 2.2005 17 7 3.3798 -2.8695 1.4402 18 6 4.5795 -3.0261 0.8462 19 8 5.1185 -2.0812 0.3099 20 6 5.2510 -4.3752 0.8485 21 6 6.4692 -4.3400 -0.0766 22 6 5.7000 -4.7189 2.2701 23 6 4.2657 -5.4362 0.3542 24 1 -0.3633 -0.0818 -1.0245 25 1 -0.3634 -0.8463 0.5830 26 1 -0.3633 0.9280 0.4414 27 1 0.0752 2.9880 -1.6870 28 1 1.5682 -2.0518 -0.4225 29 1 3.1022 -1.1663 -0.5987 30 1 1.0361 -1.0576 2.8687 31 1 0.4747 -2.2013 1.6054 32 1 2.2644 -2.7730 4.0348 33 1 0.8578 -3.7159 3.4381 34 1 3.3554 -4.5139 2.7725 35 1 2.0698 -4.5312 1.5281 36 1 7.2096 -3.6475 0.3239 37 1 6.9034 -5.3375 -0.1436 38 1 6.1623 -4.0099 -1.0690 39 1 4.8259 -4.9303 2.8861 40 1 6.3471 -5.5956 2.2448 41 1 6.2468 -3.8759 2.6924 42 1 3.9458 -5.1913 -0.6586 43 1 4.7513 -6.4120 0.3563 44 1 3.3978 -5.4612 1.0133 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733939031.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:27:15 Heat of formation + Delta-G solvation = -33.687925 kcal Electronic energy + Delta-G solvation = -22223.503430 eV Core-core repulsion = 19175.746116 eV Total energy + Delta-G solvation = -3047.757314 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.59752 -38.93774 -37.18621 -36.57372 -33.54940 -32.38996 -30.67366 -28.24595 -28.14200 -27.97765 -26.81384 -25.19241 -22.97253 -22.41909 -21.36808 -19.66452 -18.64582 -17.78243 -17.21177 -16.78096 -16.34634 -15.75770 -15.55683 -15.27313 -14.92947 -14.71611 -14.61527 -14.41481 -13.81485 -13.74212 -13.38601 -13.15002 -13.04168 -12.99001 -12.82978 -12.80042 -12.58247 -12.52988 -12.37080 -12.26080 -12.14194 -11.98188 -11.88620 -11.55537 -11.45979 -11.37122 -10.64632 -10.56368 -9.66432 -8.60559 -7.93214 -5.47244 1.37914 1.41950 1.48435 1.69244 2.05090 2.45348 3.22574 3.43332 3.66956 3.75213 3.81132 3.94267 3.95913 4.06951 4.27454 4.33856 4.40892 4.49736 4.55079 4.70923 4.75581 4.83242 4.86436 4.90914 4.92674 4.98459 5.01112 5.07066 5.10349 5.13380 5.18361 5.23742 5.30119 5.37757 5.38232 5.43328 5.56194 5.60121 5.68407 6.34226 6.67748 7.13998 7.26338 7.80981 8.28095 9.10812 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.022666 B = 0.005681 C = 0.004974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.032533 B = 4927.276272 C = 5627.975050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.179 3.821 2 N -0.611 5.611 3 C -0.269 4.269 4 H 0.047 0.953 5 C -0.037 4.037 6 N -0.930 5.930 7 Si 0.963 3.037 8 H -0.287 1.287 9 H -0.282 1.282 10 H -0.273 1.273 11 C 0.156 3.844 12 C 0.123 3.877 13 H 0.029 0.971 14 C -0.111 4.111 15 C -0.123 4.123 16 C 0.085 3.915 17 N -0.610 5.610 18 C 0.518 3.482 19 O -0.595 6.595 20 C -0.078 4.078 21 C -0.126 4.126 22 C -0.138 4.138 23 C -0.150 4.150 24 H -0.011 1.011 25 H 0.035 0.965 26 H 0.032 0.968 27 H 0.252 0.748 28 H 0.047 0.953 29 H 0.012 0.988 30 H 0.066 0.934 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.116 0.884 34 H 0.110 0.890 35 H 0.090 0.910 36 H 0.044 0.956 37 H 0.095 0.905 38 H 0.036 0.964 39 H 0.084 0.916 40 H 0.095 0.905 41 H 0.041 0.959 42 H 0.041 0.959 43 H 0.095 0.905 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.327 -20.763 10.265 23.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.335 5.335 3 C -0.400 4.400 4 H 0.065 0.935 5 C -0.233 4.233 6 N -0.575 5.575 7 Si 0.791 3.209 8 H -0.213 1.213 9 H -0.207 1.207 10 H -0.199 1.199 11 C 0.028 3.972 12 C 0.017 3.983 13 H 0.047 0.953 14 C -0.149 4.149 15 C -0.160 4.160 16 C -0.035 4.035 17 N -0.343 5.343 18 C 0.308 3.692 19 O -0.475 6.475 20 C -0.081 4.081 21 C -0.183 4.183 22 C -0.195 4.195 23 C -0.207 4.207 24 H 0.007 0.993 25 H 0.053 0.947 26 H 0.051 0.949 27 H 0.062 0.938 28 H 0.066 0.934 29 H 0.030 0.970 30 H 0.085 0.915 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.134 0.866 34 H 0.128 0.872 35 H 0.108 0.892 36 H 0.063 0.937 37 H 0.113 0.887 38 H 0.055 0.945 39 H 0.102 0.898 40 H 0.114 0.886 41 H 0.060 0.940 42 H 0.061 0.939 43 H 0.114 0.886 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 4.555 -20.153 9.858 22.893 hybrid contribution 0.530 1.854 -0.708 2.055 sum 5.085 -18.299 9.149 21.081 Atomic orbital electron populations 1.20637 0.82173 0.97505 0.96214 1.43857 1.02113 1.00751 1.86767 1.19183 1.04155 0.89694 1.26953 0.93531 1.25977 0.97912 1.02219 0.97225 1.70157 1.16994 1.30724 1.39622 0.85424 0.78104 0.79327 0.78087 1.21318 1.20732 1.19894 1.20952 0.94317 0.87543 0.94363 1.22089 0.92169 0.86186 0.97830 0.95290 1.22529 0.95089 0.99445 0.97823 1.22866 1.00332 0.95827 0.97018 1.23040 0.95670 0.90655 0.94150 1.48716 1.18414 1.14046 1.53104 1.21316 0.79732 0.91484 0.76638 1.90708 1.65049 1.44468 1.47259 1.20826 0.96864 0.90610 0.99765 1.21676 0.95955 1.02792 0.97910 1.21975 1.02781 1.02504 0.92246 1.22166 0.99237 0.97961 1.01314 0.99288 0.94707 0.94949 0.93836 0.93434 0.96979 0.91532 0.90454 0.90507 0.86607 0.87193 0.89232 0.93697 0.88669 0.94478 0.89763 0.88608 0.94020 0.93938 0.88643 0.89519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.12 8.69 127.77 1.11 10.23 16 2 N -0.61 -33.32 2.76 -726.92 -2.01 -35.32 16 3 C -0.27 -16.37 9.55 84.04 0.80 -15.57 16 4 H 0.05 2.93 7.83 -2.91 -0.02 2.90 16 5 C -0.04 -2.23 5.33 84.86 0.45 -1.78 16 6 N -0.93 -57.21 10.65 21.65 0.23 -56.98 16 7 Si 0.96 48.42 29.56 68.60 2.03 50.45 16 8 H -0.29 -14.51 7.11 99.48 0.71 -13.80 16 9 H -0.28 -13.69 7.11 99.48 0.71 -12.99 16 10 H -0.27 -13.24 7.11 99.48 0.71 -12.53 16 11 C 0.16 7.38 5.11 86.38 0.44 7.82 16 12 C 0.12 4.79 3.07 45.34 0.14 4.93 16 13 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 14 C -0.11 -3.27 5.62 31.78 0.18 -3.09 16 15 C -0.12 -2.27 7.08 31.99 0.23 -2.04 16 16 C 0.09 1.59 4.91 86.86 0.43 2.02 16 17 N -0.61 -18.91 3.04 -788.01 -2.39 -21.31 16 18 C 0.52 17.80 6.30 87.66 0.55 18.35 16 19 O -0.59 -27.78 15.17 -3.04 -0.05 -27.83 16 20 C -0.08 -1.73 0.75 -52.93 -0.04 -1.77 16 21 C -0.13 -2.95 7.75 71.98 0.56 -2.39 16 22 C -0.14 -2.19 8.31 71.98 0.60 -1.59 16 23 C -0.15 -2.44 8.15 71.98 0.59 -1.85 16 24 H -0.01 -0.62 7.79 -2.38 -0.02 -0.64 16 25 H 0.03 1.45 5.99 -2.39 -0.01 1.44 16 26 H 0.03 1.78 6.94 -2.39 -0.02 1.76 16 27 H 0.25 14.95 8.31 -92.71 -0.77 14.18 16 28 H 0.05 2.07 7.95 -2.39 -0.02 2.06 16 29 H 0.01 0.66 6.84 -2.39 -0.02 0.64 16 30 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 31 H 0.08 2.27 6.18 -2.39 -0.01 2.25 16 32 H 0.08 1.38 8.14 -2.38 -0.02 1.36 16 33 H 0.12 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.11 1.40 4.53 -2.39 -0.01 1.39 16 35 H 0.09 1.38 6.89 -2.39 -0.02 1.36 16 36 H 0.04 1.18 8.12 -2.38 -0.02 1.16 16 37 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.04 1.03 8.09 -2.38 -0.02 1.01 16 39 H 0.08 1.00 5.15 -2.39 -0.01 0.98 16 40 H 0.10 1.00 8.11 -2.39 -0.02 0.98 16 41 H 0.04 0.82 8.10 -2.39 -0.02 0.81 16 42 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 43 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 44 H 0.09 1.14 4.19 -2.38 -0.01 1.13 16 Total: -1.00 -78.97 331.16 4.81 -74.16 By element: Atomic # 1 Polarization: 2.62 SS G_CDS: 0.96 Total: 3.58 kcal Atomic # 6 Polarization: 7.22 SS G_CDS: 6.03 Total: 13.26 kcal Atomic # 7 Polarization: -109.44 SS G_CDS: -4.17 Total: -113.61 kcal Atomic # 8 Polarization: -27.78 SS G_CDS: -0.05 Total: -27.83 kcal Atomic # 14 Polarization: 48.42 SS G_CDS: 2.03 Total: 50.45 kcal Total: -78.97 4.81 -74.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733939031.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.469 kcal (2) G-P(sol) polarization free energy of solvation -78.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds