Wall clock time and date at job start Mon Mar 30 2020 00:27:18
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46502 * 1
3 3 C 1.36935 * 120.00115 * 2 1
4 4 H 1.08007 * 119.99700 * 186.44563 * 3 2 1
5 5 C 1.38814 * 120.00173 * 6.43927 * 3 2 1
6 6 N 1.31617 * 119.99549 * 6.52487 * 5 3 2
7 7 Si 1.86793 * 119.99881 * 186.52025 * 5 3 2
8 8 H 1.48506 * 109.47187 * 60.00389 * 7 5 3
9 9 H 1.48495 * 109.47152 * 180.02562 * 7 5 3
10 10 H 1.48501 * 109.47329 * 300.00293 * 7 5 3
11 11 C 1.46503 * 119.99537 * 180.02562 * 2 1 3
12 12 C 1.53006 * 109.46762 * 275.34457 * 11 2 1
13 13 H 1.08997 * 109.87168 * 53.87818 * 12 11 2
14 14 C 1.54328 * 109.88323 * 292.85884 * 12 11 2
15 15 C 1.55543 * 102.75679 * 218.26978 * 14 12 11
16 16 C 1.54909 * 101.60271 * 35.53460 * 15 14 12
17 17 N 1.47024 * 109.87826 * 174.89079 * 12 11 2
18 18 C 1.34772 * 125.65142 * 298.54530 * 17 12 11
19 19 O 1.21278 * 120.00197 * 5.42464 * 18 17 12
20 20 C 1.50705 * 120.00149 * 185.41715 * 18 17 12
21 21 C 1.52993 * 109.47126 * 185.56593 * 20 18 17
22 22 C 1.52998 * 109.46955 * 305.56829 * 20 18 17
23 23 C 1.53002 * 109.46810 * 65.56499 * 20 18 17
24 24 H 1.08996 * 109.47431 * 174.71064 * 1 2 3
25 25 H 1.09003 * 109.46786 * 294.71634 * 1 2 3
26 26 H 1.09001 * 109.46871 * 54.70642 * 1 2 3
27 27 H 0.96997 * 119.99450 * 179.97438 * 6 5 3
28 28 H 1.08997 * 109.47021 * 155.34652 * 11 2 1
29 29 H 1.08998 * 109.47597 * 35.34515 * 11 2 1
30 30 H 1.08997 * 110.71726 * 336.60077 * 14 12 11
31 31 H 1.08991 * 110.71692 * 99.87093 * 14 12 11
32 32 H 1.08997 * 111.02627 * 277.43579 * 15 14 12
33 33 H 1.09008 * 110.99557 * 153.61761 * 15 14 12
34 34 H 1.09004 * 110.36296 * 204.11846 * 16 15 14
35 35 H 1.08993 * 110.36429 * 81.79408 * 16 15 14
36 36 H 1.09000 * 109.47470 * 59.99876 * 21 20 18
37 37 H 1.09003 * 109.47329 * 180.02562 * 21 20 18
38 38 H 1.09004 * 109.47005 * 300.00102 * 21 20 18
39 39 H 1.08997 * 109.47936 * 59.99525 * 22 20 18
40 40 H 1.09003 * 109.46681 * 180.02562 * 22 20 18
41 41 H 1.09004 * 109.47190 * 299.99421 * 22 20 18
42 42 H 1.08995 * 109.46810 * 66.06630 * 23 20 18
43 43 H 1.09002 * 109.46676 * 186.07016 * 23 20 18
44 44 H 1.08997 * 109.47237 * 306.06582 * 23 20 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1497 1.1859 0.0000
4 1 3.2247 1.1888 -0.1050
5 6 1.4623 2.3843 0.1348
6 7 0.1713 2.3771 0.3909
7 14 2.3695 4.0070 -0.0471
8 1 2.9706 4.0888 -1.4027
9 1 1.4169 5.1304 0.1410
10 1 3.4424 4.0917 0.9760
11 6 2.1974 -1.2688 -0.0006
12 6 2.3360 -1.7783 1.4355
13 1 1.3545 -1.8298 1.9067
14 6 3.2558 -0.8359 2.2403
15 6 4.0646 -1.8227 3.1300
16 6 4.2323 -3.0338 2.1789
17 7 2.9612 -3.1089 1.4358
18 6 2.4564 -4.2141 0.8526
19 8 1.4490 -4.1394 0.1815
20 6 3.1438 -5.5429 1.0344
21 6 2.4550 -6.5966 0.1649
22 6 4.6112 -5.4190 0.6193
23 6 3.0631 -5.9620 2.5037
24 1 -0.3634 -1.0232 -0.0947
25 1 -0.3633 0.4297 0.9336
26 1 -0.3633 0.5938 -0.8388
27 1 -0.3090 3.2145 0.4855
28 1 3.1879 -1.1163 -0.4292
29 1 1.6532 -2.0023 -0.5954
30 1 3.9187 -0.2831 1.5747
31 1 2.6672 -0.1539 2.8538
32 1 3.4995 -2.0999 4.0198
33 1 5.0328 -1.4011 3.4003
34 1 4.3911 -3.9472 2.7522
35 1 5.0631 -2.8658 1.4937
36 1 2.5125 -6.2980 -0.8818
37 1 2.9519 -7.5578 0.2967
38 1 1.4096 -6.6848 0.4607
39 1 5.1020 -4.6683 1.2386
40 1 5.1082 -6.3802 0.7503
41 1 4.6687 -5.1204 -0.4275
42 1 2.0239 -6.1548 2.7699
43 1 3.6512 -6.8671 2.6561
44 1 3.4569 -5.1629 3.1316
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001733939032.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 00:27:18
Heat of formation + Delta-G solvation = -5.865201 kcal
Electronic energy + Delta-G solvation = -22252.157320 eV
Core-core repulsion = 19205.606490 eV
Total energy + Delta-G solvation = -3046.550830 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 268.189 amu
Computer time = 0.56 seconds
Orbital eigenvalues (eV)
-40.35513 -37.50963 -35.72779 -35.08292 -31.46334 -31.11828 -29.01229 -27.50028
-27.12636 -25.84192 -25.22861 -23.76966 -21.35950 -21.12033 -19.80709 -18.32201
-16.88130 -16.35433 -16.01462 -15.12552 -14.70691 -14.59662 -13.97710 -13.67082
-13.61667 -13.41813 -13.03179 -12.75477 -12.61250 -12.36509 -12.22013 -12.01420
-11.95087 -11.69088 -11.52588 -11.18545 -11.03744 -10.96366 -10.86736 -10.72846
-10.44072 -10.37439 -10.24335 -10.07613 -9.74126 -9.68737 -9.18924 -8.55205
-8.24796 -6.78578 -5.54910 -2.99154 2.94741 3.28484 3.41908 3.47772
3.48487 4.46516 4.56543 4.69119 4.79613 4.82479 5.02865 5.13828
5.32974 5.39420 5.47404 5.50481 5.53265 5.59326 5.70562 5.72569
5.76409 5.81331 5.86914 5.89182 6.00753 6.04520 6.11802 6.15437
6.25480 6.40678 6.50082 6.64582 6.75351 6.90869 6.97094 7.10198
7.69771 7.80882 7.92196 8.03461 8.45538 8.53794 9.35163 9.99119
10.44227 11.43526
Molecular weight = 268.19amu
Principal moments of inertia in cm(-1)
A = 0.030103 B = 0.005217 C = 0.004807
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 929.918149 B = 5365.667897 C = 5823.323631
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.168 3.832
2 N -0.605 5.605
3 C -0.240 4.240
4 H 0.071 0.929
5 C -0.007 4.007
6 N -0.917 5.917
7 Si 0.906 3.094
8 H -0.287 1.287
9 H -0.291 1.291
10 H -0.286 1.286
11 C 0.148 3.852
12 C 0.114 3.886
13 H 0.066 0.934
14 C -0.105 4.105
15 C -0.141 4.141
16 C 0.092 3.908
17 N -0.609 5.609
18 C 0.532 3.468
19 O -0.535 6.535
20 C -0.084 4.084
21 C -0.126 4.126
22 C -0.155 4.155
23 C -0.144 4.144
24 H -0.006 1.006
25 H 0.048 0.952
26 H 0.032 0.968
27 H 0.249 0.751
28 H 0.042 0.958
29 H 0.051 0.949
30 H 0.078 0.922
31 H 0.081 0.919
32 H 0.069 0.931
33 H 0.077 0.923
34 H 0.079 0.921
35 H 0.068 0.932
36 H 0.060 0.940
37 H 0.057 0.943
38 H 0.062 0.938
39 H 0.072 0.928
40 H 0.063 0.937
41 H 0.060 0.940
42 H 0.060 0.940
43 H 0.065 0.935
44 H 0.065 0.935
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 9.881 -15.577 5.732 19.317
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C 0.024 3.976
2 N -0.328 5.328
3 C -0.369 4.369
4 H 0.089 0.911
5 C -0.203 4.203
6 N -0.565 5.565
7 Si 0.736 3.264
8 H -0.213 1.213
9 H -0.217 1.217
10 H -0.212 1.212
11 C 0.020 3.980
12 C 0.009 3.991
13 H 0.084 0.916
14 C -0.143 4.143
15 C -0.179 4.179
16 C -0.031 4.031
17 N -0.344 5.344
18 C 0.320 3.680
19 O -0.412 6.412
20 C -0.087 4.087
21 C -0.183 4.183
22 C -0.212 4.212
23 C -0.201 4.201
24 H 0.013 0.987
25 H 0.067 0.933
26 H 0.051 0.949
27 H 0.060 0.940
28 H 0.061 0.939
29 H 0.070 0.930
30 H 0.097 0.903
31 H 0.099 0.901
32 H 0.088 0.912
33 H 0.096 0.904
34 H 0.097 0.903
35 H 0.086 0.914
36 H 0.080 0.920
37 H 0.076 0.924
38 H 0.081 0.919
39 H 0.091 0.909
40 H 0.082 0.918
41 H 0.079 0.921
42 H 0.079 0.921
43 H 0.084 0.916
44 H 0.084 0.916
Dipole moment (debyes) X Y Z Total
from point charges 9.155 -15.428 5.326 18.713
hybrid contribution 0.487 1.024 0.022 1.135
sum 9.642 -14.403 5.347 18.139
Atomic orbital electron populations
1.21006 0.81646 0.93306 1.01625 1.44005 1.02411 1.00326 1.86045
1.19241 0.91228 0.83738 1.42686 0.91126 1.24844 0.95959 0.97698
1.01766 1.70192 1.06890 1.24683 1.54769 0.86307 0.78431 0.83746
0.77885 1.21337 1.21711 1.21215 1.21086 0.96146 0.88335 0.92469
1.22702 0.95922 0.79600 1.00909 0.91578 1.22569 0.97831 0.96321
0.97619 1.22943 1.01048 0.95954 0.97937 1.22636 0.87045 0.99084
0.94305 1.48704 1.22376 1.09618 1.53683 1.20147 0.84547 0.84369
0.78925 1.90698 1.25793 1.85757 1.38939 1.20746 0.96752 0.93453
0.97733 1.21644 1.00587 0.96433 0.99651 1.22175 0.93769 1.02818
1.02437 1.21970 1.02695 1.01749 0.93732 0.98706 0.93321 0.94916
0.94018 0.93936 0.93037 0.90299 0.90082 0.91226 0.90411 0.90346
0.91432 0.92049 0.92383 0.91899 0.90906 0.91816 0.92133 0.92102
0.91642 0.91581
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.17 4.52 9.00 59.85 0.54 5.06 16
2 N -0.60 -15.80 2.83 -181.11 -0.51 -16.32 16
3 C -0.24 -6.56 8.86 -15.06 -0.13 -6.69 16
4 H 0.07 1.86 7.59 -52.48 -0.40 1.46 16
5 C -0.01 -0.18 5.40 -17.43 -0.09 -0.28 16
6 N -0.92 -27.07 9.59 55.49 0.53 -26.54 16
7 Si 0.91 22.05 29.56 -169.99 -5.02 17.03 16
8 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16
9 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16
10 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16
11 C 0.15 3.33 5.09 -4.04 -0.02 3.31 16
12 C 0.11 2.18 3.14 -66.95 -0.21 1.97 16
13 H 0.07 1.44 8.14 -51.93 -0.42 1.01 16
14 C -0.11 -1.80 5.78 -24.68 -0.14 -1.95 16
15 C -0.14 -1.73 7.10 -24.37 -0.17 -1.91 16
16 C 0.09 1.09 4.77 -2.53 -0.01 1.08 16
17 N -0.61 -9.64 3.06 -163.01 -0.50 -10.14 16
18 C 0.53 8.75 6.41 -10.98 -0.07 8.68 16
19 O -0.54 -11.11 14.75 5.56 0.08 -11.03 16
20 C -0.08 -0.98 0.75 -155.66 -0.12 -1.10 16
21 C -0.13 -1.44 7.78 37.15 0.29 -1.15 16
22 C -0.15 -1.50 8.15 37.16 0.30 -1.19 16
23 C -0.14 -1.39 8.28 37.16 0.31 -1.08 16
24 H -0.01 -0.14 7.84 -51.93 -0.41 -0.55 16
25 H 0.05 1.39 6.80 -51.93 -0.35 1.04 16
26 H 0.03 0.93 7.33 -51.93 -0.38 0.55 16
27 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16
28 H 0.04 0.94 7.84 -51.93 -0.41 0.53 16
29 H 0.05 1.24 6.38 -51.93 -0.33 0.91 16
30 H 0.08 1.44 7.24 -51.93 -0.38 1.07 16
31 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16
32 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16
33 H 0.08 0.80 8.14 -51.92 -0.42 0.38 16
34 H 0.08 0.74 4.30 -51.93 -0.22 0.52 16
35 H 0.07 0.75 7.34 -51.93 -0.38 0.36 16
36 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16
37 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16
38 H 0.06 0.79 8.04 -51.93 -0.42 0.37 16
39 H 0.07 0.65 4.15 -51.93 -0.22 0.44 16
40 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16
41 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16
42 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16
43 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16
44 H 0.07 0.62 5.26 -51.93 -0.27 0.34 16
LS Contribution 331.44 15.07 4.99 4.99
Total: -1.00 -31.72 331.44 -7.49 -39.21
By element:
Atomic # 1 Polarization: 5.59 SS G_CDS: -7.53 Total: -1.94 kcal
Atomic # 6 Polarization: 4.27 SS G_CDS: 0.47 Total: 4.73 kcal
Atomic # 7 Polarization: -52.52 SS G_CDS: -0.48 Total: -53.00 kcal
Atomic # 8 Polarization: -11.11 SS G_CDS: 0.08 Total: -11.03 kcal
Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal
Total LS contribution 4.99 Total: 4.99 kcal
Total: -31.72 -7.49 -39.21 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001733939032.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 33.342 kcal
(2) G-P(sol) polarization free energy of solvation -31.719 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.623 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.488 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.207 kcal
(6) G-S(sol) free energy of system = (1) + (5) -5.865 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.56 seconds