Wall clock time and date at job start Mon Mar 30 2020 00:27:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36935 * 120.00115 * 2 1 4 4 H 1.08007 * 119.99700 * 186.44563 * 3 2 1 5 5 C 1.38814 * 120.00173 * 6.43927 * 3 2 1 6 6 N 1.31617 * 119.99549 * 6.52487 * 5 3 2 7 7 Si 1.86793 * 119.99881 * 186.52025 * 5 3 2 8 8 H 1.48506 * 109.47187 * 60.00389 * 7 5 3 9 9 H 1.48495 * 109.47152 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47329 * 300.00293 * 7 5 3 11 11 C 1.46503 * 119.99537 * 180.02562 * 2 1 3 12 12 C 1.53006 * 109.46762 * 275.34457 * 11 2 1 13 13 H 1.08997 * 109.87168 * 53.87818 * 12 11 2 14 14 C 1.54328 * 109.88323 * 292.85884 * 12 11 2 15 15 C 1.55543 * 102.75679 * 218.26978 * 14 12 11 16 16 C 1.54909 * 101.60271 * 35.53460 * 15 14 12 17 17 N 1.47024 * 109.87826 * 174.89079 * 12 11 2 18 18 C 1.34772 * 125.65142 * 298.54530 * 17 12 11 19 19 O 1.21278 * 120.00197 * 5.42464 * 18 17 12 20 20 C 1.50705 * 120.00149 * 185.41715 * 18 17 12 21 21 C 1.52993 * 109.47126 * 185.56593 * 20 18 17 22 22 C 1.52998 * 109.46955 * 305.56829 * 20 18 17 23 23 C 1.53002 * 109.46810 * 65.56499 * 20 18 17 24 24 H 1.08996 * 109.47431 * 174.71064 * 1 2 3 25 25 H 1.09003 * 109.46786 * 294.71634 * 1 2 3 26 26 H 1.09001 * 109.46871 * 54.70642 * 1 2 3 27 27 H 0.96997 * 119.99450 * 179.97438 * 6 5 3 28 28 H 1.08997 * 109.47021 * 155.34652 * 11 2 1 29 29 H 1.08998 * 109.47597 * 35.34515 * 11 2 1 30 30 H 1.08997 * 110.71726 * 336.60077 * 14 12 11 31 31 H 1.08991 * 110.71692 * 99.87093 * 14 12 11 32 32 H 1.08997 * 111.02627 * 277.43579 * 15 14 12 33 33 H 1.09008 * 110.99557 * 153.61761 * 15 14 12 34 34 H 1.09004 * 110.36296 * 204.11846 * 16 15 14 35 35 H 1.08993 * 110.36429 * 81.79408 * 16 15 14 36 36 H 1.09000 * 109.47470 * 59.99876 * 21 20 18 37 37 H 1.09003 * 109.47329 * 180.02562 * 21 20 18 38 38 H 1.09004 * 109.47005 * 300.00102 * 21 20 18 39 39 H 1.08997 * 109.47936 * 59.99525 * 22 20 18 40 40 H 1.09003 * 109.46681 * 180.02562 * 22 20 18 41 41 H 1.09004 * 109.47190 * 299.99421 * 22 20 18 42 42 H 1.08995 * 109.46810 * 66.06630 * 23 20 18 43 43 H 1.09002 * 109.46676 * 186.07016 * 23 20 18 44 44 H 1.08997 * 109.47237 * 306.06582 * 23 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.2247 1.1888 -0.1050 5 6 1.4623 2.3843 0.1348 6 7 0.1713 2.3771 0.3909 7 14 2.3695 4.0070 -0.0471 8 1 2.9706 4.0888 -1.4027 9 1 1.4169 5.1304 0.1410 10 1 3.4424 4.0917 0.9760 11 6 2.1974 -1.2688 -0.0006 12 6 2.3360 -1.7783 1.4355 13 1 1.3545 -1.8298 1.9067 14 6 3.2558 -0.8359 2.2403 15 6 4.0646 -1.8227 3.1300 16 6 4.2323 -3.0338 2.1789 17 7 2.9612 -3.1089 1.4358 18 6 2.4564 -4.2141 0.8526 19 8 1.4490 -4.1394 0.1815 20 6 3.1438 -5.5429 1.0344 21 6 2.4550 -6.5966 0.1649 22 6 4.6112 -5.4190 0.6193 23 6 3.0631 -5.9620 2.5037 24 1 -0.3634 -1.0232 -0.0947 25 1 -0.3633 0.4297 0.9336 26 1 -0.3633 0.5938 -0.8388 27 1 -0.3090 3.2145 0.4855 28 1 3.1879 -1.1163 -0.4292 29 1 1.6532 -2.0023 -0.5954 30 1 3.9187 -0.2831 1.5747 31 1 2.6672 -0.1539 2.8538 32 1 3.4995 -2.0999 4.0198 33 1 5.0328 -1.4011 3.4003 34 1 4.3911 -3.9472 2.7522 35 1 5.0631 -2.8658 1.4937 36 1 2.5125 -6.2980 -0.8818 37 1 2.9519 -7.5578 0.2967 38 1 1.4096 -6.6848 0.4607 39 1 5.1020 -4.6683 1.2386 40 1 5.1082 -6.3802 0.7503 41 1 4.6687 -5.1204 -0.4275 42 1 2.0239 -6.1548 2.7699 43 1 3.6512 -6.8671 2.6561 44 1 3.4569 -5.1629 3.1316 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733939032.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:27:18 Heat of formation + Delta-G solvation = -5.865201 kcal Electronic energy + Delta-G solvation = -22252.157320 eV Core-core repulsion = 19205.606490 eV Total energy + Delta-G solvation = -3046.550830 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.35513 -37.50963 -35.72779 -35.08292 -31.46334 -31.11828 -29.01229 -27.50028 -27.12636 -25.84192 -25.22861 -23.76966 -21.35950 -21.12033 -19.80709 -18.32201 -16.88130 -16.35433 -16.01462 -15.12552 -14.70691 -14.59662 -13.97710 -13.67082 -13.61667 -13.41813 -13.03179 -12.75477 -12.61250 -12.36509 -12.22013 -12.01420 -11.95087 -11.69088 -11.52588 -11.18545 -11.03744 -10.96366 -10.86736 -10.72846 -10.44072 -10.37439 -10.24335 -10.07613 -9.74126 -9.68737 -9.18924 -8.55205 -8.24796 -6.78578 -5.54910 -2.99154 2.94741 3.28484 3.41908 3.47772 3.48487 4.46516 4.56543 4.69119 4.79613 4.82479 5.02865 5.13828 5.32974 5.39420 5.47404 5.50481 5.53265 5.59326 5.70562 5.72569 5.76409 5.81331 5.86914 5.89182 6.00753 6.04520 6.11802 6.15437 6.25480 6.40678 6.50082 6.64582 6.75351 6.90869 6.97094 7.10198 7.69771 7.80882 7.92196 8.03461 8.45538 8.53794 9.35163 9.99119 10.44227 11.43526 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.030103 B = 0.005217 C = 0.004807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.918149 B = 5365.667897 C = 5823.323631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.168 3.832 2 N -0.605 5.605 3 C -0.240 4.240 4 H 0.071 0.929 5 C -0.007 4.007 6 N -0.917 5.917 7 Si 0.906 3.094 8 H -0.287 1.287 9 H -0.291 1.291 10 H -0.286 1.286 11 C 0.148 3.852 12 C 0.114 3.886 13 H 0.066 0.934 14 C -0.105 4.105 15 C -0.141 4.141 16 C 0.092 3.908 17 N -0.609 5.609 18 C 0.532 3.468 19 O -0.535 6.535 20 C -0.084 4.084 21 C -0.126 4.126 22 C -0.155 4.155 23 C -0.144 4.144 24 H -0.006 1.006 25 H 0.048 0.952 26 H 0.032 0.968 27 H 0.249 0.751 28 H 0.042 0.958 29 H 0.051 0.949 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.069 0.931 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.068 0.932 36 H 0.060 0.940 37 H 0.057 0.943 38 H 0.062 0.938 39 H 0.072 0.928 40 H 0.063 0.937 41 H 0.060 0.940 42 H 0.060 0.940 43 H 0.065 0.935 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.881 -15.577 5.732 19.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.328 5.328 3 C -0.369 4.369 4 H 0.089 0.911 5 C -0.203 4.203 6 N -0.565 5.565 7 Si 0.736 3.264 8 H -0.213 1.213 9 H -0.217 1.217 10 H -0.212 1.212 11 C 0.020 3.980 12 C 0.009 3.991 13 H 0.084 0.916 14 C -0.143 4.143 15 C -0.179 4.179 16 C -0.031 4.031 17 N -0.344 5.344 18 C 0.320 3.680 19 O -0.412 6.412 20 C -0.087 4.087 21 C -0.183 4.183 22 C -0.212 4.212 23 C -0.201 4.201 24 H 0.013 0.987 25 H 0.067 0.933 26 H 0.051 0.949 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.070 0.930 30 H 0.097 0.903 31 H 0.099 0.901 32 H 0.088 0.912 33 H 0.096 0.904 34 H 0.097 0.903 35 H 0.086 0.914 36 H 0.080 0.920 37 H 0.076 0.924 38 H 0.081 0.919 39 H 0.091 0.909 40 H 0.082 0.918 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.084 0.916 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 9.155 -15.428 5.326 18.713 hybrid contribution 0.487 1.024 0.022 1.135 sum 9.642 -14.403 5.347 18.139 Atomic orbital electron populations 1.21006 0.81646 0.93306 1.01625 1.44005 1.02411 1.00326 1.86045 1.19241 0.91228 0.83738 1.42686 0.91126 1.24844 0.95959 0.97698 1.01766 1.70192 1.06890 1.24683 1.54769 0.86307 0.78431 0.83746 0.77885 1.21337 1.21711 1.21215 1.21086 0.96146 0.88335 0.92469 1.22702 0.95922 0.79600 1.00909 0.91578 1.22569 0.97831 0.96321 0.97619 1.22943 1.01048 0.95954 0.97937 1.22636 0.87045 0.99084 0.94305 1.48704 1.22376 1.09618 1.53683 1.20147 0.84547 0.84369 0.78925 1.90698 1.25793 1.85757 1.38939 1.20746 0.96752 0.93453 0.97733 1.21644 1.00587 0.96433 0.99651 1.22175 0.93769 1.02818 1.02437 1.21970 1.02695 1.01749 0.93732 0.98706 0.93321 0.94916 0.94018 0.93936 0.93037 0.90299 0.90082 0.91226 0.90411 0.90346 0.91432 0.92049 0.92383 0.91899 0.90906 0.91816 0.92133 0.92102 0.91642 0.91581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 4.52 9.00 59.85 0.54 5.06 16 2 N -0.60 -15.80 2.83 -181.11 -0.51 -16.32 16 3 C -0.24 -6.56 8.86 -15.06 -0.13 -6.69 16 4 H 0.07 1.86 7.59 -52.48 -0.40 1.46 16 5 C -0.01 -0.18 5.40 -17.43 -0.09 -0.28 16 6 N -0.92 -27.07 9.59 55.49 0.53 -26.54 16 7 Si 0.91 22.05 29.56 -169.99 -5.02 17.03 16 8 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 9 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 10 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 11 C 0.15 3.33 5.09 -4.04 -0.02 3.31 16 12 C 0.11 2.18 3.14 -66.95 -0.21 1.97 16 13 H 0.07 1.44 8.14 -51.93 -0.42 1.01 16 14 C -0.11 -1.80 5.78 -24.68 -0.14 -1.95 16 15 C -0.14 -1.73 7.10 -24.37 -0.17 -1.91 16 16 C 0.09 1.09 4.77 -2.53 -0.01 1.08 16 17 N -0.61 -9.64 3.06 -163.01 -0.50 -10.14 16 18 C 0.53 8.75 6.41 -10.98 -0.07 8.68 16 19 O -0.54 -11.11 14.75 5.56 0.08 -11.03 16 20 C -0.08 -0.98 0.75 -155.66 -0.12 -1.10 16 21 C -0.13 -1.44 7.78 37.15 0.29 -1.15 16 22 C -0.15 -1.50 8.15 37.16 0.30 -1.19 16 23 C -0.14 -1.39 8.28 37.16 0.31 -1.08 16 24 H -0.01 -0.14 7.84 -51.93 -0.41 -0.55 16 25 H 0.05 1.39 6.80 -51.93 -0.35 1.04 16 26 H 0.03 0.93 7.33 -51.93 -0.38 0.55 16 27 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 28 H 0.04 0.94 7.84 -51.93 -0.41 0.53 16 29 H 0.05 1.24 6.38 -51.93 -0.33 0.91 16 30 H 0.08 1.44 7.24 -51.93 -0.38 1.07 16 31 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 32 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.08 0.80 8.14 -51.92 -0.42 0.38 16 34 H 0.08 0.74 4.30 -51.93 -0.22 0.52 16 35 H 0.07 0.75 7.34 -51.93 -0.38 0.36 16 36 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.06 0.79 8.04 -51.93 -0.42 0.37 16 39 H 0.07 0.65 4.15 -51.93 -0.22 0.44 16 40 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 41 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.07 0.62 5.26 -51.93 -0.27 0.34 16 LS Contribution 331.44 15.07 4.99 4.99 Total: -1.00 -31.72 331.44 -7.49 -39.21 By element: Atomic # 1 Polarization: 5.59 SS G_CDS: -7.53 Total: -1.94 kcal Atomic # 6 Polarization: 4.27 SS G_CDS: 0.47 Total: 4.73 kcal Atomic # 7 Polarization: -52.52 SS G_CDS: -0.48 Total: -53.00 kcal Atomic # 8 Polarization: -11.11 SS G_CDS: 0.08 Total: -11.03 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -31.72 -7.49 -39.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733939032.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.342 kcal (2) G-P(sol) polarization free energy of solvation -31.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds