Wall clock time and date at job start Mon Mar 30 2020 00:27:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36935 * 120.00115 * 2 1 4 4 H 1.08007 * 119.99700 * 186.44563 * 3 2 1 5 5 C 1.38814 * 120.00173 * 6.43927 * 3 2 1 6 6 N 1.31617 * 119.99549 * 6.52487 * 5 3 2 7 7 Si 1.86793 * 119.99881 * 186.52025 * 5 3 2 8 8 H 1.48506 * 109.47187 * 60.00389 * 7 5 3 9 9 H 1.48495 * 109.47152 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47329 * 300.00293 * 7 5 3 11 11 C 1.46503 * 119.99537 * 180.02562 * 2 1 3 12 12 C 1.53006 * 109.46762 * 275.34457 * 11 2 1 13 13 H 1.08997 * 109.87168 * 53.87818 * 12 11 2 14 14 C 1.54328 * 109.88323 * 292.85884 * 12 11 2 15 15 C 1.55543 * 102.75679 * 218.26978 * 14 12 11 16 16 C 1.54909 * 101.60271 * 35.53460 * 15 14 12 17 17 N 1.47024 * 109.87826 * 174.89079 * 12 11 2 18 18 C 1.34772 * 125.65142 * 298.54530 * 17 12 11 19 19 O 1.21278 * 120.00197 * 5.42464 * 18 17 12 20 20 C 1.50705 * 120.00149 * 185.41715 * 18 17 12 21 21 C 1.52993 * 109.47126 * 185.56593 * 20 18 17 22 22 C 1.52998 * 109.46955 * 305.56829 * 20 18 17 23 23 C 1.53002 * 109.46810 * 65.56499 * 20 18 17 24 24 H 1.08996 * 109.47431 * 174.71064 * 1 2 3 25 25 H 1.09003 * 109.46786 * 294.71634 * 1 2 3 26 26 H 1.09001 * 109.46871 * 54.70642 * 1 2 3 27 27 H 0.96997 * 119.99450 * 179.97438 * 6 5 3 28 28 H 1.08997 * 109.47021 * 155.34652 * 11 2 1 29 29 H 1.08998 * 109.47597 * 35.34515 * 11 2 1 30 30 H 1.08997 * 110.71726 * 336.60077 * 14 12 11 31 31 H 1.08991 * 110.71692 * 99.87093 * 14 12 11 32 32 H 1.08997 * 111.02627 * 277.43579 * 15 14 12 33 33 H 1.09008 * 110.99557 * 153.61761 * 15 14 12 34 34 H 1.09004 * 110.36296 * 204.11846 * 16 15 14 35 35 H 1.08993 * 110.36429 * 81.79408 * 16 15 14 36 36 H 1.09000 * 109.47470 * 59.99876 * 21 20 18 37 37 H 1.09003 * 109.47329 * 180.02562 * 21 20 18 38 38 H 1.09004 * 109.47005 * 300.00102 * 21 20 18 39 39 H 1.08997 * 109.47936 * 59.99525 * 22 20 18 40 40 H 1.09003 * 109.46681 * 180.02562 * 22 20 18 41 41 H 1.09004 * 109.47190 * 299.99421 * 22 20 18 42 42 H 1.08995 * 109.46810 * 66.06630 * 23 20 18 43 43 H 1.09002 * 109.46676 * 186.07016 * 23 20 18 44 44 H 1.08997 * 109.47237 * 306.06582 * 23 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.2247 1.1888 -0.1050 5 6 1.4623 2.3843 0.1348 6 7 0.1713 2.3771 0.3909 7 14 2.3695 4.0070 -0.0471 8 1 2.9706 4.0888 -1.4027 9 1 1.4169 5.1304 0.1410 10 1 3.4424 4.0917 0.9760 11 6 2.1974 -1.2688 -0.0006 12 6 2.3360 -1.7783 1.4355 13 1 1.3545 -1.8298 1.9067 14 6 3.2558 -0.8359 2.2403 15 6 4.0646 -1.8227 3.1300 16 6 4.2323 -3.0338 2.1789 17 7 2.9612 -3.1089 1.4358 18 6 2.4564 -4.2141 0.8526 19 8 1.4490 -4.1394 0.1815 20 6 3.1438 -5.5429 1.0344 21 6 2.4550 -6.5966 0.1649 22 6 4.6112 -5.4190 0.6193 23 6 3.0631 -5.9620 2.5037 24 1 -0.3634 -1.0232 -0.0947 25 1 -0.3633 0.4297 0.9336 26 1 -0.3633 0.5938 -0.8388 27 1 -0.3090 3.2145 0.4855 28 1 3.1879 -1.1163 -0.4292 29 1 1.6532 -2.0023 -0.5954 30 1 3.9187 -0.2831 1.5747 31 1 2.6672 -0.1539 2.8538 32 1 3.4995 -2.0999 4.0198 33 1 5.0328 -1.4011 3.4003 34 1 4.3911 -3.9472 2.7522 35 1 5.0631 -2.8658 1.4937 36 1 2.5125 -6.2980 -0.8818 37 1 2.9519 -7.5578 0.2967 38 1 1.4096 -6.6848 0.4607 39 1 5.1020 -4.6683 1.2386 40 1 5.1082 -6.3802 0.7503 41 1 4.6687 -5.1204 -0.4275 42 1 2.0239 -6.1548 2.7699 43 1 3.6512 -6.8671 2.6561 44 1 3.4569 -5.1629 3.1316 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733939032.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:27:17 Heat of formation + Delta-G solvation = -25.431398 kcal Electronic energy + Delta-G solvation = -22253.005774 eV Core-core repulsion = 19205.606490 eV Total energy + Delta-G solvation = -3047.399284 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.60655 -38.90652 -37.25843 -36.58412 -33.43499 -32.37890 -30.63257 -28.24004 -28.15239 -27.97114 -26.76324 -25.19080 -22.99894 -22.42871 -21.23967 -19.58409 -18.89168 -17.70820 -17.28107 -16.74180 -16.19147 -15.74632 -15.50341 -15.32189 -14.83779 -14.65476 -14.56751 -14.27558 -13.95755 -13.71098 -13.45161 -13.15281 -12.94978 -12.89704 -12.77910 -12.68721 -12.60167 -12.54952 -12.32099 -12.22166 -12.09529 -11.89415 -11.86753 -11.52989 -11.50097 -11.35392 -10.66863 -10.53201 -9.70398 -8.89281 -7.71783 -5.19186 1.47261 1.50790 1.57040 1.68633 2.03504 2.53593 3.35944 3.44035 3.65107 3.77879 3.82318 3.94218 3.96200 4.08713 4.27937 4.35090 4.46442 4.49221 4.58069 4.72594 4.74737 4.77099 4.84104 4.88803 4.94206 4.97010 4.99104 5.06189 5.11256 5.12529 5.19894 5.24421 5.36853 5.38442 5.42379 5.42795 5.51893 5.63428 5.76297 6.28275 6.67529 7.15499 7.24305 7.86246 8.30313 9.27033 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.030103 B = 0.005217 C = 0.004807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.918149 B = 5365.667897 C = 5823.323631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.190 3.810 2 N -0.619 5.619 3 C -0.243 4.243 4 H 0.082 0.918 5 C -0.064 4.064 6 N -0.951 5.951 7 Si 0.975 3.025 8 H -0.282 1.282 9 H -0.298 1.298 10 H -0.270 1.270 11 C 0.155 3.845 12 C 0.123 3.877 13 H 0.031 0.969 14 C -0.103 4.103 15 C -0.125 4.125 16 C 0.089 3.911 17 N -0.609 5.609 18 C 0.521 3.479 19 O -0.592 6.592 20 C -0.077 4.077 21 C -0.125 4.125 22 C -0.151 4.151 23 C -0.141 4.141 24 H 0.001 0.999 25 H 0.027 0.973 26 H 0.007 0.993 27 H 0.243 0.757 28 H 0.048 0.952 29 H 0.029 0.971 30 H 0.068 0.932 31 H 0.056 0.944 32 H 0.078 0.922 33 H 0.110 0.890 34 H 0.114 0.886 35 H 0.085 0.915 36 H 0.042 0.958 37 H 0.093 0.907 38 H 0.042 0.958 39 H 0.084 0.916 40 H 0.095 0.905 41 H 0.045 0.955 42 H 0.046 0.954 43 H 0.098 0.902 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.525 -17.039 7.195 22.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.046 3.954 2 N -0.343 5.343 3 C -0.373 4.373 4 H 0.100 0.900 5 C -0.257 4.257 6 N -0.600 5.600 7 Si 0.803 3.197 8 H -0.208 1.208 9 H -0.224 1.224 10 H -0.195 1.195 11 C 0.027 3.973 12 C 0.017 3.983 13 H 0.049 0.951 14 C -0.141 4.141 15 C -0.163 4.163 16 C -0.032 4.032 17 N -0.342 5.342 18 C 0.311 3.689 19 O -0.472 6.472 20 C -0.081 4.081 21 C -0.183 4.183 22 C -0.208 4.208 23 C -0.198 4.198 24 H 0.020 0.980 25 H 0.046 0.954 26 H 0.026 0.974 27 H 0.053 0.947 28 H 0.066 0.934 29 H 0.047 0.953 30 H 0.087 0.913 31 H 0.075 0.925 32 H 0.097 0.903 33 H 0.128 0.872 34 H 0.132 0.868 35 H 0.103 0.897 36 H 0.061 0.939 37 H 0.111 0.889 38 H 0.062 0.938 39 H 0.103 0.897 40 H 0.113 0.887 41 H 0.064 0.936 42 H 0.066 0.934 43 H 0.117 0.883 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 12.866 -16.931 6.813 22.330 hybrid contribution -0.676 1.403 -0.481 1.630 sum 12.190 -15.528 6.332 20.732 Atomic orbital electron populations 1.20621 0.82649 0.92805 0.99371 1.44167 1.02116 1.01545 1.86429 1.19582 0.91775 0.84153 1.41759 0.90001 1.25683 0.96789 1.01149 1.02041 1.70397 1.08470 1.24997 1.56148 0.85213 0.77304 0.79018 0.78162 1.20803 1.22444 1.19535 1.21064 0.95308 0.86397 0.94507 1.22168 0.95573 0.82351 0.98208 0.95089 1.22417 0.97489 0.96428 0.97808 1.22946 1.01746 0.94375 0.97240 1.22983 0.85182 1.00558 0.94470 1.48749 1.23600 1.07986 1.53891 1.21269 0.84021 0.86007 0.77622 1.90670 1.28434 1.86725 1.41379 1.20821 0.97637 0.90051 0.99543 1.21664 1.00005 0.98110 0.98481 1.22195 0.91967 1.04991 1.01677 1.21986 1.02673 1.03446 0.91655 0.98030 0.95439 0.97421 0.94683 0.93402 0.95304 0.91293 0.92544 0.90331 0.87203 0.86788 0.89688 0.93906 0.88857 0.93830 0.89722 0.88670 0.93618 0.93445 0.88283 0.90855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.19 10.82 9.00 127.77 1.15 11.97 16 2 N -0.62 -33.56 2.83 -726.91 -2.06 -35.62 16 3 C -0.24 -13.52 8.86 84.03 0.74 -12.78 16 4 H 0.08 4.28 7.59 -2.91 -0.02 4.26 16 5 C -0.06 -3.65 5.40 84.86 0.46 -3.19 16 6 N -0.95 -58.00 9.59 21.65 0.21 -57.80 16 7 Si 0.97 45.62 29.56 68.60 2.03 47.65 16 8 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 9 H -0.30 -14.19 7.11 99.48 0.71 -13.49 16 10 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 11 C 0.15 7.18 5.09 86.38 0.44 7.62 16 12 C 0.12 4.83 3.14 45.34 0.14 4.97 16 13 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 14 C -0.10 -3.47 5.78 31.92 0.18 -3.29 16 15 C -0.13 -2.66 7.10 32.12 0.23 -2.43 16 16 C 0.09 1.76 4.77 86.85 0.41 2.18 16 17 N -0.61 -18.70 3.06 -788.03 -2.41 -21.11 16 18 C 0.52 17.00 6.41 87.66 0.56 17.57 16 19 O -0.59 -25.74 14.75 -3.02 -0.04 -25.78 16 20 C -0.08 -1.64 0.75 -52.93 -0.04 -1.68 16 21 C -0.13 -2.71 7.78 71.98 0.56 -2.15 16 22 C -0.15 -2.32 8.15 71.98 0.59 -1.73 16 23 C -0.14 -2.19 8.28 71.98 0.60 -1.59 16 24 H 0.00 0.06 7.84 -2.39 -0.02 0.04 16 25 H 0.03 1.66 6.80 -2.39 -0.02 1.64 16 26 H 0.01 0.44 7.33 -2.39 -0.02 0.42 16 27 H 0.24 14.51 8.31 -92.71 -0.77 13.74 16 28 H 0.05 2.13 7.84 -2.39 -0.02 2.12 16 29 H 0.03 1.46 6.38 -2.39 -0.02 1.44 16 30 H 0.07 2.45 7.24 -2.39 -0.02 2.43 16 31 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 32 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.11 1.72 8.14 -2.38 -0.02 1.70 16 34 H 0.11 1.53 4.30 -2.38 -0.01 1.52 16 35 H 0.09 1.47 7.34 -2.39 -0.02 1.46 16 36 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.04 1.09 8.04 -2.39 -0.02 1.07 16 39 H 0.08 1.09 4.15 -2.39 -0.01 1.08 16 40 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 41 H 0.04 0.85 8.14 -2.38 -0.02 0.83 16 42 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 43 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 44 H 0.07 1.03 5.26 -2.39 -0.01 1.02 16 Total: -1.00 -73.80 331.44 4.71 -69.09 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: 0.96 Total: 8.11 kcal Atomic # 6 Polarization: 9.43 SS G_CDS: 6.03 Total: 15.45 kcal Atomic # 7 Polarization: -110.26 SS G_CDS: -4.26 Total: -114.52 kcal Atomic # 8 Polarization: -25.74 SS G_CDS: -0.04 Total: -25.78 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.65 kcal Total: -73.80 4.71 -69.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733939032.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.659 kcal (2) G-P(sol) polarization free energy of solvation -73.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds