Wall clock time and date at job start Mon Mar 30 2020 00:49:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47232 * 2 1 4 4 C 1.52995 * 109.46911 * 180.02562 * 3 2 1 5 5 H 1.09000 * 109.47563 * 304.99697 * 4 3 2 6 6 C 1.53001 * 109.47629 * 65.00287 * 4 3 2 7 7 C 1.50706 * 109.46965 * 185.00210 * 4 3 2 8 8 O 1.21288 * 120.00030 * 359.97438 * 7 4 3 9 9 N 1.34774 * 120.00164 * 180.02562 * 7 4 3 10 10 C 1.46501 * 120.00022 * 179.97438 * 9 7 4 11 11 H 1.09002 * 109.47045 * 34.99609 * 10 9 7 12 12 C 1.53000 * 109.47136 * 274.99616 * 10 9 7 13 13 C 1.53004 * 109.47373 * 154.99603 * 10 9 7 14 14 C 1.53499 * 114.20358 * 295.68270 * 13 10 9 15 15 N 1.47070 * 87.98123 * 220.33959 * 14 13 10 16 16 C 1.36930 * 136.05846 * 207.08130 * 15 14 13 17 17 H 1.08007 * 120.00143 * 7.51717 * 16 15 14 18 18 C 1.38809 * 120.00463 * 187.51602 * 16 15 14 19 19 N 1.31620 * 120.00649 * 174.40287 * 18 16 15 20 20 Si 1.86805 * 119.99629 * 354.39643 * 18 16 15 21 21 H 1.48500 * 109.46802 * 174.95924 * 20 18 16 22 22 H 1.48493 * 109.47393 * 294.96184 * 20 18 16 23 23 H 1.48504 * 109.46716 * 54.96317 * 20 18 16 24 24 C 1.47068 * 87.88511 * 27.34460 * 15 14 13 25 25 H 1.09005 * 109.46624 * 299.99679 * 1 2 3 26 26 H 1.08996 * 109.47178 * 59.99835 * 1 2 3 27 27 H 1.09004 * 109.47002 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46624 * 240.00321 * 2 1 3 29 29 H 1.08996 * 109.47178 * 120.00165 * 2 1 3 30 30 H 1.09004 * 109.46789 * 60.00103 * 3 2 1 31 31 H 1.09000 * 109.46812 * 300.00470 * 3 2 1 32 32 H 1.09000 * 109.46609 * 59.99212 * 6 4 3 33 33 H 1.08995 * 109.47108 * 179.97438 * 6 4 3 34 34 H 1.08997 * 109.46655 * 300.00080 * 6 4 3 35 35 H 0.97002 * 120.00125 * 359.97438 * 9 7 4 36 36 H 1.08998 * 109.47162 * 304.63827 * 12 10 9 37 37 H 1.08999 * 109.47223 * 64.63874 * 12 10 9 38 38 H 1.08999 * 109.46923 * 184.63216 * 12 10 9 39 39 H 1.08999 * 113.41040 * 68.87923 * 13 10 9 40 40 H 1.09004 * 113.46524 * 105.56682 * 14 13 10 41 41 H 1.08996 * 113.52299 * 335.12982 * 14 13 10 42 42 H 0.97006 * 119.99221 * 355.01083 * 19 18 16 43 43 H 1.08994 * 113.47031 * 87.43571 * 24 15 14 44 44 H 1.08999 * 113.46704 * 217.87558 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 1 3.9337 0.8528 0.8409 6 6 4.0795 0.8330 -1.3083 7 6 4.0724 2.8578 0.1232 8 8 3.2843 3.7762 0.2036 9 7 5.3975 3.1032 0.1437 10 6 5.8859 4.4792 0.2636 11 1 5.2137 5.0487 0.9055 12 6 5.9364 5.1250 -1.1225 13 6 7.2889 4.4711 0.8738 14 6 7.3462 3.9397 2.3128 15 7 8.3129 5.0066 2.6130 16 6 9.3372 5.1870 3.5037 17 1 9.6610 4.3671 4.1277 18 6 9.9595 6.4237 3.6047 19 7 10.8675 6.6296 4.5350 20 14 9.5081 7.7959 2.4202 21 1 10.2172 9.0406 2.8115 22 1 9.9066 7.4114 1.0424 23 1 8.0418 8.0263 2.4654 24 6 7.6911 5.7971 1.5400 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5138 0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6766 1.9563 -0.8900 32 1 3.7158 1.4226 -2.1498 33 1 5.1695 0.8334 -1.3089 34 1 3.7161 -0.1907 -1.3979 35 1 6.0278 2.3687 0.0790 36 1 6.5427 4.5104 -1.7879 37 1 4.9258 5.2057 -1.5228 38 1 6.3765 6.1191 -1.0443 39 1 8.0466 4.0517 0.2120 40 1 7.7683 2.9376 2.3889 41 1 6.4048 4.0425 2.8523 42 1 11.0501 5.9424 5.1949 43 1 6.8402 6.3902 1.8750 44 1 8.4069 6.3775 0.9578 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734108992.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:39 Heat of formation + Delta-G solvation = -5.498277 kcal Electronic energy + Delta-G solvation = -20969.679214 eV Core-core repulsion = 17923.144295 eV Total energy + Delta-G solvation = -3046.534919 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.17741 -38.68884 -36.22816 -34.94493 -32.65089 -32.17694 -30.34867 -27.81483 -26.86896 -25.36688 -24.58317 -23.46121 -21.46300 -20.69684 -20.00897 -19.32126 -17.49900 -16.99435 -16.32623 -15.77288 -15.30957 -15.02679 -14.36069 -14.22873 -13.99744 -13.63153 -13.44582 -13.23364 -13.01553 -12.72338 -12.51145 -12.26581 -12.15358 -11.97580 -11.77129 -11.47194 -11.26110 -11.18794 -11.08434 -11.03422 -10.75270 -10.70032 -10.34377 -10.15831 -9.68151 -9.18338 -9.14253 -8.92464 -8.89506 -7.16606 -6.29808 -3.23706 2.70122 3.19608 3.40762 3.45311 3.65573 4.49830 4.50949 4.59978 4.66141 4.71184 4.91095 4.94896 5.00977 5.06647 5.09460 5.28012 5.40354 5.41545 5.48184 5.53828 5.55931 5.57553 5.63463 5.72342 5.76410 5.81874 5.89466 5.90907 6.06568 6.07820 6.17038 6.18599 6.23436 6.25410 6.32601 6.40562 6.62890 6.91372 7.11559 7.58805 8.23082 8.29986 8.97209 9.49768 10.36550 11.20143 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.036569 B = 0.003674 C = 0.003541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.500038 B = 7618.268308 C = 7905.642345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.100 4.100 4 C -0.113 4.113 5 H 0.096 0.904 6 C -0.144 4.144 7 C 0.516 3.484 8 O -0.544 6.544 9 N -0.719 5.719 10 C 0.151 3.849 11 H 0.088 0.912 12 C -0.159 4.159 13 C -0.141 4.141 14 C 0.130 3.870 15 N -0.629 5.629 16 C -0.304 4.304 17 H 0.082 0.918 18 C -0.026 4.026 19 N -0.934 5.934 20 Si 1.070 2.930 21 H -0.295 1.295 22 H -0.292 1.292 23 H -0.286 1.286 24 C 0.108 3.892 25 H 0.054 0.946 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.063 0.937 29 H 0.061 0.939 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.068 0.932 35 H 0.399 0.601 36 H 0.055 0.945 37 H 0.056 0.944 38 H 0.067 0.933 39 H 0.098 0.902 40 H 0.042 0.958 41 H 0.036 0.964 42 H 0.260 0.740 43 H 0.046 0.954 44 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.360 -13.225 -13.668 25.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.138 4.138 4 C -0.134 4.134 5 H 0.114 0.886 6 C -0.202 4.202 7 C 0.302 3.698 8 O -0.421 6.421 9 N -0.370 5.370 10 C 0.046 3.954 11 H 0.106 0.894 12 C -0.217 4.217 13 C -0.161 4.161 14 C 0.003 3.997 15 N -0.357 5.357 16 C -0.431 4.431 17 H 0.100 0.900 18 C -0.224 4.224 19 N -0.576 5.576 20 Si 0.902 3.098 21 H -0.222 1.222 22 H -0.220 1.220 23 H -0.213 1.213 24 C -0.018 4.018 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.089 0.911 31 H 0.086 0.914 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.087 0.913 35 H 0.233 0.767 36 H 0.074 0.926 37 H 0.075 0.925 38 H 0.086 0.914 39 H 0.116 0.884 40 H 0.061 0.939 41 H 0.054 0.946 42 H 0.070 0.930 43 H 0.064 0.936 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -16.323 -10.960 -13.840 24.044 hybrid contribution -0.035 -1.948 0.570 2.030 sum -16.358 -12.908 -13.270 24.704 Atomic orbital electron populations 1.21763 0.95831 1.01408 1.01996 1.21605 0.95980 0.96759 1.02014 1.21423 0.92347 0.96505 1.03548 1.21352 0.97819 0.93761 1.00472 0.88568 1.21819 1.01175 1.01263 0.95927 1.20640 0.82345 0.91177 0.75653 1.90688 1.55351 1.46466 1.49562 1.46106 1.06848 1.09596 1.74444 1.20990 0.95218 0.82226 0.96959 0.89369 1.22124 1.01844 1.01159 0.96609 1.23576 0.94710 1.00863 0.96945 1.22293 0.92787 0.93623 0.90953 1.45971 1.33570 1.16003 1.40135 1.20155 1.08689 0.98401 1.15806 0.90000 1.25744 0.97294 0.97822 1.01580 1.70923 1.34419 1.36311 1.15979 0.83724 0.75478 0.75964 0.74618 1.22202 1.22032 1.21300 1.22734 0.96079 0.93394 0.89551 0.92668 0.92739 0.92882 0.91808 0.92015 0.91081 0.91382 0.92138 0.92125 0.91330 0.76719 0.92604 0.92513 0.91376 0.88372 0.93943 0.94613 0.92969 0.93613 0.92775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.91 37.16 0.37 -0.69 16 2 C -0.13 -0.90 5.69 -26.73 -0.15 -1.05 16 3 C -0.10 -0.93 4.03 -26.73 -0.11 -1.04 16 4 C -0.11 -1.02 2.72 -91.77 -0.25 -1.27 16 5 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 6 C -0.14 -1.01 8.85 37.16 0.33 -0.68 16 7 C 0.52 6.53 7.12 -10.98 -0.08 6.46 16 8 O -0.54 -9.03 15.58 5.55 0.09 -8.95 16 9 N -0.72 -8.52 4.83 -53.80 -0.26 -8.78 16 10 C 0.15 2.14 2.35 -67.93 -0.16 1.98 16 11 H 0.09 1.45 7.41 -51.93 -0.38 1.07 16 12 C -0.16 -2.02 9.48 37.16 0.35 -1.67 16 13 C -0.14 -2.32 3.52 -89.97 -0.32 -2.64 16 14 C 0.13 2.53 8.12 -8.50 -0.07 2.46 16 15 N -0.63 -15.61 3.69 -184.59 -0.68 -16.29 16 16 C -0.30 -8.90 11.08 -15.06 -0.17 -9.06 16 17 H 0.08 2.51 8.06 -52.48 -0.42 2.09 16 18 C -0.03 -0.78 5.50 -17.43 -0.10 -0.87 16 19 N -0.93 -29.84 13.70 55.49 0.76 -29.08 16 20 Si 1.07 27.06 25.16 -169.99 -4.28 22.79 16 21 H -0.29 -7.57 7.11 56.52 0.40 -7.17 16 22 H -0.29 -6.91 6.51 56.52 0.37 -6.55 16 23 H -0.29 -6.79 6.21 56.52 0.35 -6.44 16 24 C 0.11 2.28 5.27 -8.37 -0.04 2.24 16 25 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 26 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 28 H 0.06 0.40 6.56 -51.93 -0.34 0.06 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.77 7.96 -51.93 -0.41 0.36 16 31 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.06 0.38 7.56 -51.93 -0.39 -0.01 16 34 H 0.07 0.39 6.56 -51.93 -0.34 0.05 16 35 H 0.40 3.80 8.02 -40.82 -0.33 3.47 16 36 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.10 1.53 8.14 -51.93 -0.42 1.11 16 40 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.04 0.71 8.10 -51.93 -0.42 0.28 16 42 H 0.26 8.20 8.73 -40.82 -0.36 7.85 16 43 H 0.05 0.97 7.50 -51.93 -0.39 0.58 16 44 H 0.05 1.17 4.72 -51.93 -0.25 0.92 16 LS Contribution 345.33 15.07 5.20 5.20 Total: -1.00 -33.95 345.33 -7.55 -41.50 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: -7.99 Total: -0.55 kcal Atomic # 6 Polarization: -5.45 SS G_CDS: -0.39 Total: -5.84 kcal Atomic # 7 Polarization: -53.97 SS G_CDS: -0.18 Total: -54.15 kcal Atomic # 8 Polarization: -9.03 SS G_CDS: 0.09 Total: -8.95 kcal Atomic # 14 Polarization: 27.06 SS G_CDS: -4.28 Total: 22.79 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -33.95 -7.55 -41.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734108992.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.998 kcal (2) G-P(sol) polarization free energy of solvation -33.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds