Wall clock time and date at job start Mon Mar 30 2020 00:49:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47232 * 2 1 4 4 C 1.52995 * 109.46911 * 180.02562 * 3 2 1 5 5 H 1.09000 * 109.47563 * 304.99697 * 4 3 2 6 6 C 1.53001 * 109.47629 * 65.00287 * 4 3 2 7 7 C 1.50706 * 109.46965 * 185.00210 * 4 3 2 8 8 O 1.21288 * 120.00030 * 359.97438 * 7 4 3 9 9 N 1.34774 * 120.00164 * 180.02562 * 7 4 3 10 10 C 1.46501 * 120.00022 * 179.97438 * 9 7 4 11 11 H 1.09002 * 109.47045 * 34.99609 * 10 9 7 12 12 C 1.53000 * 109.47136 * 274.99616 * 10 9 7 13 13 C 1.53004 * 109.47373 * 154.99603 * 10 9 7 14 14 C 1.53499 * 114.20358 * 295.68270 * 13 10 9 15 15 N 1.47070 * 87.98123 * 220.33959 * 14 13 10 16 16 C 1.36930 * 136.05846 * 207.08130 * 15 14 13 17 17 H 1.08007 * 120.00143 * 7.51717 * 16 15 14 18 18 C 1.38809 * 120.00463 * 187.51602 * 16 15 14 19 19 N 1.31620 * 120.00649 * 174.40287 * 18 16 15 20 20 Si 1.86805 * 119.99629 * 354.39643 * 18 16 15 21 21 H 1.48500 * 109.46802 * 174.95924 * 20 18 16 22 22 H 1.48493 * 109.47393 * 294.96184 * 20 18 16 23 23 H 1.48504 * 109.46716 * 54.96317 * 20 18 16 24 24 C 1.47068 * 87.88511 * 27.34460 * 15 14 13 25 25 H 1.09005 * 109.46624 * 299.99679 * 1 2 3 26 26 H 1.08996 * 109.47178 * 59.99835 * 1 2 3 27 27 H 1.09004 * 109.47002 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46624 * 240.00321 * 2 1 3 29 29 H 1.08996 * 109.47178 * 120.00165 * 2 1 3 30 30 H 1.09004 * 109.46789 * 60.00103 * 3 2 1 31 31 H 1.09000 * 109.46812 * 300.00470 * 3 2 1 32 32 H 1.09000 * 109.46609 * 59.99212 * 6 4 3 33 33 H 1.08995 * 109.47108 * 179.97438 * 6 4 3 34 34 H 1.08997 * 109.46655 * 300.00080 * 6 4 3 35 35 H 0.97002 * 120.00125 * 359.97438 * 9 7 4 36 36 H 1.08998 * 109.47162 * 304.63827 * 12 10 9 37 37 H 1.08999 * 109.47223 * 64.63874 * 12 10 9 38 38 H 1.08999 * 109.46923 * 184.63216 * 12 10 9 39 39 H 1.08999 * 113.41040 * 68.87923 * 13 10 9 40 40 H 1.09004 * 113.46524 * 105.56682 * 14 13 10 41 41 H 1.08996 * 113.52299 * 335.12982 * 14 13 10 42 42 H 0.97006 * 119.99221 * 355.01083 * 19 18 16 43 43 H 1.08994 * 113.47031 * 87.43571 * 24 15 14 44 44 H 1.08999 * 113.46704 * 217.87558 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 1 3.9337 0.8528 0.8409 6 6 4.0795 0.8330 -1.3083 7 6 4.0724 2.8578 0.1232 8 8 3.2843 3.7762 0.2036 9 7 5.3975 3.1032 0.1437 10 6 5.8859 4.4792 0.2636 11 1 5.2137 5.0487 0.9055 12 6 5.9364 5.1250 -1.1225 13 6 7.2889 4.4711 0.8738 14 6 7.3462 3.9397 2.3128 15 7 8.3129 5.0066 2.6130 16 6 9.3372 5.1870 3.5037 17 1 9.6610 4.3671 4.1277 18 6 9.9595 6.4237 3.6047 19 7 10.8675 6.6296 4.5350 20 14 9.5081 7.7959 2.4202 21 1 10.2172 9.0406 2.8115 22 1 9.9066 7.4114 1.0424 23 1 8.0418 8.0263 2.4654 24 6 7.6911 5.7971 1.5400 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5138 0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6766 1.9563 -0.8900 32 1 3.7158 1.4226 -2.1498 33 1 5.1695 0.8334 -1.3089 34 1 3.7161 -0.1907 -1.3979 35 1 6.0278 2.3687 0.0790 36 1 6.5427 4.5104 -1.7879 37 1 4.9258 5.2057 -1.5228 38 1 6.3765 6.1191 -1.0443 39 1 8.0466 4.0517 0.2120 40 1 7.7683 2.9376 2.3889 41 1 6.4048 4.0425 2.8523 42 1 11.0501 5.9424 5.1949 43 1 6.8402 6.3902 1.8750 44 1 8.4069 6.3775 0.9578 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734108992.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:38 Heat of formation + Delta-G solvation = -28.790633 kcal Electronic energy + Delta-G solvation = -20970.689247 eV Core-core repulsion = 17923.144295 eV Total energy + Delta-G solvation = -3047.544952 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.30113 -40.14359 -37.02805 -36.18315 -34.53634 -33.17720 -31.45732 -29.58370 -27.47745 -26.98117 -25.75745 -24.70396 -22.62572 -21.76864 -21.29752 -20.55007 -19.57184 -17.98796 -17.54798 -17.03287 -16.52494 -15.99618 -15.83847 -15.52510 -15.15830 -14.94595 -14.78324 -14.49023 -14.01437 -13.68414 -13.48983 -13.27261 -13.13968 -13.10138 -13.07993 -12.71921 -12.57989 -12.36497 -12.11066 -12.03290 -11.82420 -11.74748 -11.62948 -11.38400 -11.30150 -11.12214 -10.92821 -10.57479 -10.02613 -9.25381 -8.64027 -5.50427 1.37477 1.48081 1.66581 1.72313 2.20576 2.53005 2.95850 3.17055 3.48300 3.77707 3.84188 3.87067 4.00608 4.19734 4.27967 4.34136 4.39924 4.43984 4.48983 4.56094 4.63362 4.67298 4.73654 4.77339 4.83327 4.86598 4.93910 4.99181 5.04735 5.07267 5.15995 5.16949 5.26969 5.28617 5.32839 5.43860 5.47346 5.52666 5.58963 5.92647 6.64839 6.67345 7.30015 7.34335 8.25040 8.87531 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.036569 B = 0.003674 C = 0.003541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.500038 B = 7618.268308 C = 7905.642345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.120 4.120 3 C -0.098 4.098 4 C -0.106 4.106 5 H 0.113 0.887 6 C -0.140 4.140 7 C 0.512 3.488 8 O -0.588 6.588 9 N -0.710 5.710 10 C 0.159 3.841 11 H 0.064 0.936 12 C -0.154 4.154 13 C -0.103 4.103 14 C 0.127 3.873 15 N -0.662 5.662 16 C -0.293 4.293 17 H 0.051 0.949 18 C -0.087 4.087 19 N -0.970 5.970 20 Si 1.107 2.893 21 H -0.305 1.305 22 H -0.263 1.263 23 H -0.265 1.265 24 C 0.097 3.903 25 H 0.046 0.954 26 H 0.052 0.948 27 H 0.064 0.936 28 H 0.079 0.921 29 H 0.068 0.932 30 H 0.047 0.953 31 H 0.055 0.945 32 H 0.052 0.948 33 H 0.073 0.927 34 H 0.087 0.913 35 H 0.414 0.586 36 H 0.076 0.924 37 H 0.050 0.950 38 H 0.069 0.931 39 H 0.119 0.881 40 H 0.055 0.945 41 H 0.036 0.964 42 H 0.246 0.754 43 H 0.047 0.953 44 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.354 -14.760 -16.308 28.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.158 4.158 3 C -0.137 4.137 4 C -0.127 4.127 5 H 0.131 0.869 6 C -0.198 4.198 7 C 0.300 3.700 8 O -0.468 6.468 9 N -0.361 5.361 10 C 0.053 3.947 11 H 0.082 0.918 12 C -0.212 4.212 13 C -0.122 4.122 14 C 0.002 3.998 15 N -0.391 5.391 16 C -0.420 4.420 17 H 0.069 0.931 18 C -0.278 4.278 19 N -0.616 5.616 20 Si 0.933 3.067 21 H -0.233 1.233 22 H -0.189 1.189 23 H -0.190 1.190 24 C -0.028 4.028 25 H 0.065 0.935 26 H 0.071 0.929 27 H 0.083 0.917 28 H 0.097 0.903 29 H 0.087 0.913 30 H 0.066 0.934 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.092 0.908 34 H 0.106 0.894 35 H 0.250 0.750 36 H 0.095 0.905 37 H 0.069 0.931 38 H 0.088 0.912 39 H 0.137 0.863 40 H 0.073 0.927 41 H 0.054 0.946 42 H 0.055 0.945 43 H 0.065 0.935 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -17.342 -12.567 -16.514 27.044 hybrid contribution 0.204 -1.574 1.449 2.149 sum -17.138 -14.142 -15.065 26.845 Atomic orbital electron populations 1.21787 0.95878 1.02043 1.01535 1.21579 0.95953 0.95198 1.03050 1.21389 0.92762 0.97692 1.01813 1.21387 0.97401 0.91461 1.02465 0.86873 1.21828 1.01967 1.01912 0.94066 1.21319 0.81995 0.92276 0.74402 1.90675 1.56429 1.48150 1.51546 1.45972 1.07106 1.09116 1.73943 1.20722 0.93031 0.83476 0.97432 0.91819 1.22072 1.01979 1.01526 0.95603 1.23265 0.96493 0.97032 0.95436 1.22480 0.91402 0.93100 0.92797 1.46119 1.33825 1.18819 1.40288 1.20042 1.09490 0.97269 1.15234 0.93131 1.27105 0.97329 1.00618 1.02771 1.71025 1.36794 1.36358 1.17391 0.83300 0.76400 0.72884 0.74155 1.23297 1.18917 1.19038 1.22947 0.95732 0.95332 0.88807 0.93498 0.92935 0.91664 0.90269 0.91343 0.93429 0.92627 0.92885 0.90845 0.89425 0.74951 0.90506 0.93106 0.91196 0.86279 0.92686 0.94624 0.94500 0.93509 0.92672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.91 9.91 71.98 0.71 -1.20 16 2 C -0.12 -1.45 5.69 30.59 0.17 -1.27 16 3 C -0.10 -1.71 4.03 30.59 0.12 -1.58 16 4 C -0.11 -1.65 2.72 -11.54 -0.03 -1.68 16 5 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 6 C -0.14 -1.47 8.85 71.98 0.64 -0.84 16 7 C 0.51 12.05 7.12 87.66 0.62 12.67 16 8 O -0.59 -19.25 15.58 -3.05 -0.05 -19.30 16 9 N -0.71 -14.78 4.83 -442.51 -2.14 -16.92 16 10 C 0.16 4.09 2.35 44.99 0.11 4.20 16 11 H 0.06 2.01 7.41 -2.39 -0.02 1.99 16 12 C -0.15 -3.41 9.48 71.98 0.68 -2.73 16 13 C -0.10 -3.06 3.52 -10.37 -0.04 -3.09 16 14 C 0.13 4.71 8.12 83.18 0.68 5.38 16 15 N -0.66 -32.13 3.69 -737.91 -2.72 -34.85 16 16 C -0.29 -17.33 11.08 84.03 0.93 -16.40 16 17 H 0.05 3.22 8.06 -2.91 -0.02 3.20 16 18 C -0.09 -5.28 5.50 84.86 0.47 -4.81 16 19 N -0.97 -63.78 13.70 21.65 0.30 -63.48 16 20 Si 1.11 54.02 25.16 68.60 1.73 55.75 16 21 H -0.30 -15.28 7.11 99.48 0.71 -14.57 16 22 H -0.26 -11.48 6.51 99.48 0.65 -10.84 16 23 H -0.26 -11.86 6.21 99.48 0.62 -11.24 16 24 C 0.10 3.84 5.27 83.27 0.44 4.28 16 25 H 0.05 0.64 8.14 -2.38 -0.02 0.62 16 26 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 27 H 0.06 0.64 8.14 -2.39 -0.02 0.63 16 28 H 0.08 0.73 6.56 -2.38 -0.02 0.71 16 29 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.05 1.03 7.96 -2.38 -0.02 1.02 16 31 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.07 0.60 7.56 -2.39 -0.02 0.58 16 34 H 0.09 0.62 6.56 -2.39 -0.02 0.61 16 35 H 0.41 6.24 8.02 -92.71 -0.74 5.50 16 36 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.12 3.15 8.14 -2.39 -0.02 3.13 16 40 H 0.05 1.89 8.14 -2.38 -0.02 1.87 16 41 H 0.04 1.35 8.10 -2.39 -0.02 1.33 16 42 H 0.25 16.21 8.73 -92.70 -0.81 15.40 16 43 H 0.05 1.87 7.50 -2.39 -0.02 1.85 16 44 H 0.06 2.20 4.72 -2.39 -0.01 2.18 16 Total: -1.00 -75.97 345.33 2.64 -73.33 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: 0.03 Total: 12.55 kcal Atomic # 6 Polarization: -12.57 SS G_CDS: 5.50 Total: -7.07 kcal Atomic # 7 Polarization: -110.69 SS G_CDS: -4.57 Total: -115.26 kcal Atomic # 8 Polarization: -19.25 SS G_CDS: -0.05 Total: -19.30 kcal Atomic # 14 Polarization: 54.02 SS G_CDS: 1.73 Total: 55.75 kcal Total: -75.97 2.64 -73.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734108992.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.536 kcal (2) G-P(sol) polarization free energy of solvation -75.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds