Wall clock time and date at job start Mon Mar 30 2020 00:49:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46557 * 2 1 4 4 C 1.53007 * 109.46788 * 179.97438 * 3 2 1 5 5 H 1.08992 * 109.47415 * 305.00536 * 4 3 2 6 6 C 1.53003 * 109.46862 * 65.00498 * 4 3 2 7 7 C 1.50695 * 109.47027 * 185.00085 * 4 3 2 8 8 O 1.21278 * 120.00267 * 0.02562 * 7 4 3 9 9 N 1.34777 * 120.00041 * 180.02562 * 7 4 3 10 10 C 1.46500 * 120.00346 * 179.97438 * 9 7 4 11 11 H 1.09001 * 109.46907 * 325.00428 * 10 9 7 12 12 C 1.52996 * 109.46969 * 84.99897 * 10 9 7 13 13 C 1.52998 * 109.47314 * 205.00159 * 10 9 7 14 14 C 1.53955 * 113.73871 * 161.82159 * 13 10 9 15 15 N 1.47813 * 86.03123 * 222.08207 * 14 13 10 16 16 C 1.36942 * 134.45145 * 204.63712 * 15 14 13 17 17 H 1.08005 * 119.99383 * 179.87057 * 16 15 14 18 18 C 1.38808 * 120.00163 * 359.88229 * 16 15 14 19 19 N 1.31616 * 120.00040 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 119.99843 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47178 * 59.99784 * 20 18 16 22 22 H 1.48499 * 109.46828 * 179.97438 * 20 18 16 23 23 H 1.48495 * 109.46733 * 299.99473 * 20 18 16 24 24 C 1.47577 * 91.05181 * 24.55326 * 15 14 13 25 25 H 1.08999 * 109.46510 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47288 * 299.99703 * 1 2 3 27 27 H 1.09006 * 109.47328 * 60.00348 * 1 2 3 28 28 H 1.09002 * 109.47186 * 240.00679 * 2 1 3 29 29 H 1.08997 * 109.47245 * 120.00284 * 2 1 3 30 30 H 1.09002 * 109.46818 * 60.00454 * 3 2 1 31 31 H 1.08997 * 109.47575 * 300.00082 * 3 2 1 32 32 H 1.08999 * 109.47058 * 300.00189 * 6 4 3 33 33 H 1.09000 * 109.47419 * 179.97438 * 6 4 3 34 34 H 1.09006 * 109.46943 * 59.99654 * 6 4 3 35 35 H 0.97000 * 119.99895 * 0.02562 * 9 7 4 36 36 H 1.09006 * 109.46931 * 60.07123 * 12 10 9 37 37 H 1.09000 * 109.47356 * 180.02562 * 12 10 9 38 38 H 1.09000 * 109.47319 * 300.07003 * 12 10 9 39 39 H 1.08995 * 112.94167 * 293.41296 * 13 10 9 40 40 H 1.08999 * 113.76939 * 336.34792 * 14 13 10 41 41 H 1.08995 * 113.76614 * 107.74810 * 14 13 10 42 42 H 0.96998 * 120.00167 * 179.97438 * 19 18 16 43 43 H 1.09003 * 113.76399 * 221.14490 * 24 15 14 44 44 H 1.09001 * 113.87383 * 89.76931 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 1 3.9330 0.8533 0.8426 6 6 4.0805 0.8329 -1.3065 7 6 4.0721 2.8580 0.1245 8 8 3.2840 3.7763 0.2049 9 7 5.3972 3.1035 0.1460 10 6 5.8855 4.4795 0.2658 11 1 5.2129 5.1514 -0.2674 12 6 5.9368 4.8756 1.7427 13 6 7.2881 4.5774 -0.3375 14 6 7.7204 6.0169 -0.6707 15 7 8.2694 5.4531 -1.9219 16 6 9.2557 5.8323 -2.7930 17 1 9.4717 5.2268 -3.6608 18 6 9.9777 6.9948 -2.5605 19 7 9.7142 7.7328 -1.5030 20 14 11.3236 7.5117 -3.7484 21 1 10.7404 7.7156 -5.0988 22 1 11.9384 8.7792 -3.2787 23 1 12.3613 6.4515 -3.8122 24 6 7.3299 4.3170 -1.8542 25 1 -0.3632 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8934 -0.5137 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 1.6765 1.9563 0.8901 31 1 1.6765 1.9564 -0.8899 32 1 3.7172 -0.1908 -1.3961 33 1 5.1705 0.8333 -1.3063 34 1 3.7174 1.4223 -2.1485 35 1 6.0276 2.3691 0.0813 36 1 6.6103 4.2044 2.2757 37 1 6.2996 5.8996 1.8319 38 1 4.9377 4.8048 2.1728 39 1 8.0328 4.0146 0.2251 40 1 6.8864 6.7013 -0.8260 41 1 8.4790 6.4148 0.0032 42 1 10.2190 8.5450 -1.3404 43 1 7.7774 3.3603 -2.1235 44 1 6.3804 4.4991 -2.3577 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734108993.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:41 Heat of formation + Delta-G solvation = -13.624939 kcal Electronic energy + Delta-G solvation = -20902.007289 eV Core-core repulsion = 17855.119971 eV Total energy + Delta-G solvation = -3046.887318 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.99907 -38.15958 -36.10444 -34.70951 -32.52008 -31.93421 -30.10577 -27.45736 -26.77058 -24.99719 -24.34204 -23.58396 -21.57623 -20.66253 -19.93890 -18.90021 -16.95366 -16.65945 -16.02947 -15.72717 -14.81686 -14.71441 -14.41900 -14.07963 -13.93164 -13.52851 -13.40531 -13.02209 -12.65009 -12.40755 -12.32304 -12.09543 -11.93925 -11.57661 -11.41570 -11.37316 -11.18648 -11.12565 -10.97815 -10.85366 -10.69239 -10.65495 -10.33402 -9.99632 -9.79816 -9.48493 -9.34422 -8.79535 -8.74517 -6.85922 -5.75254 -3.07359 2.82054 3.35734 3.40362 3.44255 3.45693 4.46565 4.57964 4.62742 4.74081 4.98827 5.05271 5.12080 5.15065 5.21724 5.37672 5.43070 5.48528 5.56946 5.59865 5.66358 5.69170 5.70232 5.79968 5.85477 5.92714 5.96027 6.04102 6.11428 6.15842 6.23706 6.32074 6.38477 6.47616 6.63279 6.66989 6.86512 7.24174 7.38450 7.57281 7.73385 7.99787 8.43230 9.06145 9.72429 10.62073 11.41994 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.038474 B = 0.003442 C = 0.003263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.580548 B = 8133.248877 C = 8580.029429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.100 4.100 4 C -0.112 4.112 5 H 0.094 0.906 6 C -0.146 4.146 7 C 0.514 3.486 8 O -0.545 6.545 9 N -0.719 5.719 10 C 0.149 3.851 11 H 0.086 0.914 12 C -0.157 4.157 13 C -0.146 4.146 14 C 0.176 3.824 15 N -0.613 5.613 16 C -0.224 4.224 17 H 0.078 0.922 18 C -0.008 4.008 19 N -0.922 5.922 20 Si 0.912 3.088 21 H -0.285 1.285 22 H -0.290 1.290 23 H -0.284 1.284 24 C 0.126 3.874 25 H 0.052 0.948 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.064 0.936 29 H 0.060 0.940 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.397 0.603 36 H 0.052 0.948 37 H 0.069 0.931 38 H 0.052 0.948 39 H 0.088 0.912 40 H 0.028 0.972 41 H 0.074 0.926 42 H 0.254 0.746 43 H 0.039 0.961 44 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.799 -15.755 5.648 21.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.138 4.138 4 C -0.133 4.133 5 H 0.112 0.888 6 C -0.203 4.203 7 C 0.300 3.700 8 O -0.422 6.422 9 N -0.369 5.369 10 C 0.045 3.955 11 H 0.104 0.896 12 C -0.215 4.215 13 C -0.167 4.167 14 C 0.050 3.950 15 N -0.339 5.339 16 C -0.351 4.351 17 H 0.096 0.904 18 C -0.205 4.205 19 N -0.569 5.569 20 Si 0.742 3.258 21 H -0.212 1.212 22 H -0.215 1.215 23 H -0.211 1.211 24 C 0.000 4.000 25 H 0.071 0.929 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.083 0.917 29 H 0.079 0.921 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.231 0.769 36 H 0.072 0.928 37 H 0.088 0.912 38 H 0.071 0.929 39 H 0.106 0.894 40 H 0.045 0.955 41 H 0.093 0.907 42 H 0.064 0.936 43 H 0.058 0.942 44 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -13.086 -14.852 5.578 20.566 hybrid contribution 1.048 0.070 -0.730 1.279 sum -12.038 -14.782 4.848 19.670 Atomic orbital electron populations 1.21763 0.95877 1.01352 1.02000 1.21605 0.95932 0.96831 1.01971 1.21424 0.92464 0.96402 1.03538 1.21344 0.97719 0.93855 1.00385 0.88833 1.21832 1.01354 1.01131 0.96014 1.20623 0.82485 0.91104 0.75784 1.90682 1.55379 1.46422 1.49744 1.46165 1.06703 1.09854 1.74184 1.21090 0.95879 0.82348 0.96210 0.89620 1.22100 1.01330 1.02148 0.95960 1.23839 0.93764 1.02599 0.96453 1.22229 0.95266 0.89542 0.87996 1.45988 1.36141 1.24765 1.26972 1.18978 1.07657 1.05488 1.03016 0.90387 1.24781 1.00073 0.97267 0.98363 1.69796 1.43012 1.16222 1.27865 0.86204 0.81599 0.77749 0.80230 1.21217 1.21536 1.21102 1.22517 0.92943 0.92291 0.92237 0.92929 0.92732 0.92685 0.91749 0.92136 0.91212 0.91293 0.91450 0.91977 0.91970 0.76895 0.92849 0.91188 0.92905 0.89421 0.95456 0.90738 0.93577 0.94232 0.95081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.91 37.16 0.37 -0.74 16 2 C -0.13 -0.95 5.69 -26.73 -0.15 -1.10 16 3 C -0.10 -0.99 4.03 -26.73 -0.11 -1.10 16 4 C -0.11 -1.09 2.73 -91.77 -0.25 -1.34 16 5 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 6 C -0.15 -1.23 8.84 37.16 0.33 -0.90 16 7 C 0.51 7.01 7.12 -10.99 -0.08 6.93 16 8 O -0.54 -9.64 15.58 5.56 0.09 -9.55 16 9 N -0.72 -9.33 4.84 -53.81 -0.26 -9.59 16 10 C 0.15 2.34 2.29 -67.93 -0.16 2.19 16 11 H 0.09 1.57 7.48 -51.93 -0.39 1.18 16 12 C -0.16 -2.26 9.44 37.16 0.35 -1.91 16 13 C -0.15 -2.64 3.35 -89.69 -0.30 -2.94 16 14 C 0.18 4.11 6.98 -2.83 -0.02 4.09 16 15 N -0.61 -15.88 3.70 -177.71 -0.66 -16.53 16 16 C -0.22 -6.36 10.70 -15.06 -0.16 -6.52 16 17 H 0.08 2.13 7.83 -52.48 -0.41 1.72 16 18 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 19 N -0.92 -27.55 11.39 55.49 0.63 -26.92 16 20 Si 0.91 22.32 29.55 -169.99 -5.02 17.29 16 21 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 22 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 23 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 24 C 0.13 2.57 8.37 -2.97 -0.02 2.54 16 25 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.45 6.57 -51.93 -0.34 0.11 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.77 7.95 -51.93 -0.41 0.36 16 31 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.07 0.46 6.57 -51.93 -0.34 0.12 16 33 H 0.06 0.49 7.56 -51.93 -0.39 0.10 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.40 4.21 8.02 -40.82 -0.33 3.88 16 36 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.07 1.03 8.09 -51.93 -0.42 0.61 16 38 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 40 H 0.03 0.67 8.03 -51.93 -0.42 0.25 16 41 H 0.07 1.91 7.17 -51.93 -0.37 1.54 16 42 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 43 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.03 0.65 8.10 -51.93 -0.42 0.23 16 LS Contribution 352.57 15.07 5.31 5.31 Total: -1.00 -32.63 352.57 -8.24 -40.87 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: -8.03 Total: 0.26 kcal Atomic # 6 Polarization: -0.84 SS G_CDS: -0.30 Total: -1.14 kcal Atomic # 7 Polarization: -52.75 SS G_CDS: -0.29 Total: -53.04 kcal Atomic # 8 Polarization: -9.64 SS G_CDS: 0.09 Total: -9.55 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -32.63 -8.24 -40.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734108993.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.243 kcal (2) G-P(sol) polarization free energy of solvation -32.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds