Wall clock time and date at job start Mon Mar 30 2020 00:49:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47236 * 2 1 4 4 C 1.53004 * 109.47083 * 179.97438 * 3 2 1 5 5 H 1.09002 * 109.46930 * 55.00078 * 4 3 2 6 6 C 1.52998 * 109.47060 * 295.00190 * 4 3 2 7 7 C 1.50692 * 109.47118 * 175.00059 * 4 3 2 8 8 O 1.21288 * 120.00095 * 359.97438 * 7 4 3 9 9 N 1.34779 * 120.00146 * 180.02562 * 7 4 3 10 10 C 1.46505 * 120.00068 * 179.97438 * 9 7 4 11 11 H 1.08999 * 109.47291 * 325.00389 * 10 9 7 12 12 C 1.53004 * 109.46668 * 84.99955 * 10 9 7 13 13 C 1.52998 * 109.47088 * 205.00036 * 10 9 7 14 14 C 1.53946 * 113.73910 * 161.82691 * 13 10 9 15 15 N 1.47819 * 86.03300 * 222.08445 * 14 13 10 16 16 C 1.36939 * 134.45658 * 204.64526 * 15 14 13 17 17 H 1.07996 * 120.00102 * 179.86648 * 16 15 14 18 18 C 1.38817 * 119.99516 * 359.86836 * 16 15 14 19 19 N 1.31614 * 120.00646 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 119.99651 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.47117 * 59.99362 * 20 18 16 22 22 H 1.48492 * 109.47249 * 179.97438 * 20 18 16 23 23 H 1.48493 * 109.47237 * 299.99883 * 20 18 16 24 24 C 1.47584 * 91.05151 * 24.54718 * 15 14 13 25 25 H 1.09000 * 109.47179 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47087 * 300.00481 * 1 2 3 27 27 H 1.09004 * 109.46752 * 59.99889 * 1 2 3 28 28 H 1.08995 * 109.47401 * 239.99926 * 2 1 3 29 29 H 1.09002 * 109.47041 * 119.99659 * 2 1 3 30 30 H 1.08996 * 109.46892 * 60.00220 * 3 2 1 31 31 H 1.08993 * 109.46912 * 299.99570 * 3 2 1 32 32 H 1.09004 * 109.47220 * 180.02562 * 6 4 3 33 33 H 1.09002 * 109.47157 * 299.99749 * 6 4 3 34 34 H 1.08992 * 109.47496 * 59.99985 * 6 4 3 35 35 H 0.96995 * 120.00118 * 359.97438 * 9 7 4 36 36 H 1.09000 * 109.46477 * 180.02562 * 12 10 9 37 37 H 1.08998 * 109.47444 * 300.05771 * 12 10 9 38 38 H 1.08994 * 109.47123 * 60.06716 * 12 10 9 39 39 H 1.08999 * 112.94302 * 293.41536 * 13 10 9 40 40 H 1.09000 * 113.76815 * 336.34349 * 14 13 10 41 41 H 1.09000 * 113.77269 * 107.74773 * 14 13 10 42 42 H 0.96999 * 120.00718 * 180.02562 * 19 18 16 43 43 H 1.08997 * 113.77051 * 221.14926 * 24 15 14 44 44 H 1.09002 * 113.86542 * 89.76984 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4425 0.0006 5 1 3.9337 0.8529 -0.8410 6 6 4.0795 0.8330 1.3083 7 6 4.0725 2.8578 -0.1232 8 8 3.2844 3.7762 -0.2044 9 7 5.3976 3.1031 -0.1446 10 6 5.8860 4.4790 -0.2656 11 1 5.2135 5.0482 -0.9073 12 6 5.9373 5.1255 1.1202 13 6 7.2886 4.4704 -0.8767 14 6 7.7211 5.8302 -1.4546 15 7 8.2700 5.0576 -2.5890 16 6 9.2564 5.2796 -3.5127 17 1 9.4723 4.5326 -4.2622 18 6 9.9786 6.4647 -3.4855 19 7 9.7151 7.3753 -2.5724 20 14 11.3236 6.7679 -4.7459 21 1 10.7395 6.7347 -6.1108 22 1 11.9388 8.0975 -4.5033 23 1 12.3614 5.7126 -4.6259 24 6 7.3304 3.9506 -2.3251 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6768 1.9563 -0.8900 32 1 5.1695 0.8334 1.3089 33 1 3.7158 1.4226 2.1499 34 1 3.7161 -0.1907 1.3979 35 1 6.0279 2.3687 -0.0800 36 1 6.3003 6.1494 1.0302 37 1 4.9383 5.1307 1.5560 38 1 6.6107 4.5570 1.7616 39 1 8.0333 4.0138 -0.2248 40 1 6.8872 6.4773 -1.7264 41 1 8.4799 6.3390 -0.8600 42 1 10.2195 8.2036 -2.5536 43 1 7.7777 2.9616 -2.4242 44 1 6.3810 4.0427 -2.8525 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734109100.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:44 Heat of formation + Delta-G solvation = -13.631540 kcal Electronic energy + Delta-G solvation = -20860.938383 eV Core-core repulsion = 17814.050779 eV Total energy + Delta-G solvation = -3046.887604 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.00014 -38.16180 -36.10631 -34.71171 -32.52418 -31.93143 -30.12010 -27.45849 -26.80249 -24.97645 -24.33545 -23.60715 -21.57372 -20.68772 -19.91565 -18.91488 -16.90591 -16.69934 -16.06419 -15.65796 -14.93526 -14.79165 -14.27898 -14.04172 -13.94937 -13.56260 -13.39179 -13.05290 -12.69486 -12.45289 -12.26963 -12.07226 -12.01634 -11.56307 -11.40234 -11.38280 -11.19347 -11.12743 -10.99567 -10.85423 -10.69375 -10.65912 -10.33327 -9.99839 -9.79693 -9.47996 -9.34621 -8.79572 -8.74717 -6.85919 -5.75200 -3.07305 2.82137 3.35374 3.40402 3.44339 3.45758 4.46605 4.56984 4.62141 4.73136 4.97172 5.04956 5.11050 5.15103 5.20734 5.36981 5.43055 5.46508 5.56693 5.60016 5.62344 5.67577 5.70462 5.79170 5.85532 5.88279 5.95764 6.04100 6.11311 6.14135 6.23591 6.32109 6.38522 6.47697 6.63316 6.67009 6.86471 7.24169 7.38443 7.57294 7.73337 7.99773 8.43153 9.06168 9.72442 10.62101 11.42030 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.037814 B = 0.003369 C = 0.003248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.298508 B = 8308.670819 C = 8619.654752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C -0.100 4.100 4 C -0.113 4.113 5 H 0.095 0.905 6 C -0.144 4.144 7 C 0.514 3.486 8 O -0.545 6.545 9 N -0.719 5.719 10 C 0.149 3.851 11 H 0.086 0.914 12 C -0.157 4.157 13 C -0.146 4.146 14 C 0.176 3.824 15 N -0.613 5.613 16 C -0.224 4.224 17 H 0.078 0.922 18 C -0.008 4.008 19 N -0.922 5.922 20 Si 0.912 3.088 21 H -0.286 1.286 22 H -0.290 1.290 23 H -0.284 1.284 24 C 0.126 3.874 25 H 0.052 0.948 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.061 0.939 29 H 0.063 0.937 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.060 0.940 33 H 0.059 0.941 34 H 0.067 0.933 35 H 0.397 0.603 36 H 0.069 0.931 37 H 0.052 0.948 38 H 0.052 0.948 39 H 0.088 0.912 40 H 0.028 0.972 41 H 0.074 0.926 42 H 0.254 0.746 43 H 0.040 0.960 44 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.807 -14.469 9.073 21.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.138 4.138 4 C -0.134 4.134 5 H 0.114 0.886 6 C -0.202 4.202 7 C 0.300 3.700 8 O -0.422 6.422 9 N -0.369 5.369 10 C 0.045 3.955 11 H 0.104 0.896 12 C -0.215 4.215 13 C -0.166 4.166 14 C 0.050 3.950 15 N -0.339 5.339 16 C -0.352 4.352 17 H 0.096 0.904 18 C -0.205 4.205 19 N -0.569 5.569 20 Si 0.742 3.258 21 H -0.212 1.212 22 H -0.215 1.215 23 H -0.211 1.211 24 C 0.000 4.000 25 H 0.071 0.929 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.080 0.920 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.086 0.914 35 H 0.231 0.769 36 H 0.088 0.912 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.106 0.894 40 H 0.045 0.955 41 H 0.093 0.907 42 H 0.064 0.936 43 H 0.058 0.942 44 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -13.094 -13.591 8.848 20.844 hybrid contribution 1.047 -0.064 -0.789 1.313 sum -12.047 -13.655 8.059 19.913 Atomic orbital electron populations 1.21762 0.95873 1.01357 1.01994 1.21606 0.95938 0.96827 1.01983 1.21420 0.92438 0.96415 1.03533 1.21350 0.97751 0.93940 1.00390 0.88644 1.21815 1.01192 1.01170 0.95983 1.20616 0.82486 0.91071 0.75802 1.90685 1.55387 1.46470 1.49688 1.46165 1.06698 1.09850 1.74188 1.21093 0.95871 0.81721 0.96841 0.89615 1.22096 1.01323 1.01413 0.96671 1.23837 0.93768 1.02690 0.96344 1.22229 0.95269 0.90157 0.87378 1.45990 1.36133 1.16704 1.35044 1.18981 1.07641 1.01368 1.07162 0.90380 1.24782 1.00071 0.96421 0.99206 1.69794 1.43031 1.08472 1.35599 0.86203 0.81589 0.77149 0.80834 1.21222 1.21537 1.21105 1.22525 0.92957 0.92886 0.91681 0.92922 0.92745 0.92679 0.92041 0.91826 0.91404 0.91099 0.92120 0.92162 0.91415 0.76894 0.91203 0.92911 0.92852 0.89416 0.95452 0.90731 0.93575 0.94211 0.95075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.91 37.16 0.37 -0.74 16 2 C -0.13 -0.96 5.69 -26.73 -0.15 -1.11 16 3 C -0.10 -0.99 4.03 -26.73 -0.11 -1.10 16 4 C -0.11 -1.10 2.72 -91.77 -0.25 -1.35 16 5 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 6 C -0.14 -1.11 8.84 37.16 0.33 -0.78 16 7 C 0.51 7.01 7.12 -10.99 -0.08 6.93 16 8 O -0.54 -9.64 15.58 5.55 0.09 -9.55 16 9 N -0.72 -9.33 4.84 -53.80 -0.26 -9.59 16 10 C 0.15 2.34 2.29 -67.93 -0.16 2.19 16 11 H 0.09 1.57 7.48 -51.93 -0.39 1.18 16 12 C -0.16 -2.25 9.44 37.16 0.35 -1.90 16 13 C -0.15 -2.64 3.35 -89.70 -0.30 -2.94 16 14 C 0.18 4.12 6.98 -2.83 -0.02 4.10 16 15 N -0.61 -15.90 3.70 -177.70 -0.66 -16.56 16 16 C -0.22 -6.38 10.70 -15.06 -0.16 -6.54 16 17 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 18 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 19 N -0.92 -27.56 11.39 55.49 0.63 -26.93 16 20 Si 0.91 22.33 29.55 -169.99 -5.02 17.31 16 21 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 22 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 23 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 24 C 0.13 2.56 8.38 -2.97 -0.02 2.54 16 25 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.43 6.56 -51.93 -0.34 0.09 16 30 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.07 0.81 7.95 -51.93 -0.41 0.40 16 32 H 0.06 0.42 7.56 -51.93 -0.39 0.03 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.42 6.56 -51.93 -0.34 0.08 16 35 H 0.40 4.21 8.02 -40.82 -0.33 3.88 16 36 H 0.07 1.03 8.09 -51.93 -0.42 0.61 16 37 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 40 H 0.03 0.67 8.03 -51.93 -0.42 0.25 16 41 H 0.07 1.92 7.17 -51.93 -0.37 1.55 16 42 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 43 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 44 H 0.03 0.65 8.10 -51.93 -0.42 0.23 16 LS Contribution 352.58 15.07 5.31 5.31 Total: -1.00 -32.67 352.58 -8.24 -40.91 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -8.03 Total: 0.13 kcal Atomic # 6 Polarization: -0.73 SS G_CDS: -0.30 Total: -1.03 kcal Atomic # 7 Polarization: -52.79 SS G_CDS: -0.29 Total: -53.08 kcal Atomic # 8 Polarization: -9.64 SS G_CDS: 0.09 Total: -9.55 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -32.67 -8.24 -40.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734109100.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.276 kcal (2) G-P(sol) polarization free energy of solvation -32.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds