Wall clock time and date at job start Mon Mar 30 2020 00:49:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47236 * 2 1 4 4 C 1.53004 * 109.47083 * 179.97438 * 3 2 1 5 5 H 1.09002 * 109.46930 * 55.00078 * 4 3 2 6 6 C 1.52998 * 109.47060 * 295.00190 * 4 3 2 7 7 C 1.50692 * 109.47118 * 175.00059 * 4 3 2 8 8 O 1.21288 * 120.00095 * 359.97438 * 7 4 3 9 9 N 1.34779 * 120.00146 * 180.02562 * 7 4 3 10 10 C 1.46505 * 120.00068 * 179.97438 * 9 7 4 11 11 H 1.08999 * 109.47291 * 325.00389 * 10 9 7 12 12 C 1.53004 * 109.46668 * 84.99955 * 10 9 7 13 13 C 1.52998 * 109.47088 * 205.00036 * 10 9 7 14 14 C 1.53946 * 113.73910 * 161.82691 * 13 10 9 15 15 N 1.47819 * 86.03300 * 222.08445 * 14 13 10 16 16 C 1.36939 * 134.45658 * 204.64526 * 15 14 13 17 17 H 1.07996 * 120.00102 * 179.86648 * 16 15 14 18 18 C 1.38817 * 119.99516 * 359.86836 * 16 15 14 19 19 N 1.31614 * 120.00646 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 119.99651 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.47117 * 59.99362 * 20 18 16 22 22 H 1.48492 * 109.47249 * 179.97438 * 20 18 16 23 23 H 1.48493 * 109.47237 * 299.99883 * 20 18 16 24 24 C 1.47584 * 91.05151 * 24.54718 * 15 14 13 25 25 H 1.09000 * 109.47179 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47087 * 300.00481 * 1 2 3 27 27 H 1.09004 * 109.46752 * 59.99889 * 1 2 3 28 28 H 1.08995 * 109.47401 * 239.99926 * 2 1 3 29 29 H 1.09002 * 109.47041 * 119.99659 * 2 1 3 30 30 H 1.08996 * 109.46892 * 60.00220 * 3 2 1 31 31 H 1.08993 * 109.46912 * 299.99570 * 3 2 1 32 32 H 1.09004 * 109.47220 * 180.02562 * 6 4 3 33 33 H 1.09002 * 109.47157 * 299.99749 * 6 4 3 34 34 H 1.08992 * 109.47496 * 59.99985 * 6 4 3 35 35 H 0.96995 * 120.00118 * 359.97438 * 9 7 4 36 36 H 1.09000 * 109.46477 * 180.02562 * 12 10 9 37 37 H 1.08998 * 109.47444 * 300.05771 * 12 10 9 38 38 H 1.08994 * 109.47123 * 60.06716 * 12 10 9 39 39 H 1.08999 * 112.94302 * 293.41536 * 13 10 9 40 40 H 1.09000 * 113.76815 * 336.34349 * 14 13 10 41 41 H 1.09000 * 113.77269 * 107.74773 * 14 13 10 42 42 H 0.96999 * 120.00718 * 180.02562 * 19 18 16 43 43 H 1.08997 * 113.77051 * 221.14926 * 24 15 14 44 44 H 1.09002 * 113.86542 * 89.76984 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4425 0.0006 5 1 3.9337 0.8529 -0.8410 6 6 4.0795 0.8330 1.3083 7 6 4.0725 2.8578 -0.1232 8 8 3.2844 3.7762 -0.2044 9 7 5.3976 3.1031 -0.1446 10 6 5.8860 4.4790 -0.2656 11 1 5.2135 5.0482 -0.9073 12 6 5.9373 5.1255 1.1202 13 6 7.2886 4.4704 -0.8767 14 6 7.7211 5.8302 -1.4546 15 7 8.2700 5.0576 -2.5890 16 6 9.2564 5.2796 -3.5127 17 1 9.4723 4.5326 -4.2622 18 6 9.9786 6.4647 -3.4855 19 7 9.7151 7.3753 -2.5724 20 14 11.3236 6.7679 -4.7459 21 1 10.7395 6.7347 -6.1108 22 1 11.9388 8.0975 -4.5033 23 1 12.3614 5.7126 -4.6259 24 6 7.3304 3.9506 -2.3251 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6768 1.9563 -0.8900 32 1 5.1695 0.8334 1.3089 33 1 3.7158 1.4226 2.1499 34 1 3.7161 -0.1907 1.3979 35 1 6.0279 2.3687 -0.0800 36 1 6.3003 6.1494 1.0302 37 1 4.9383 5.1307 1.5560 38 1 6.6107 4.5570 1.7616 39 1 8.0333 4.0138 -0.2248 40 1 6.8872 6.4773 -1.7264 41 1 8.4799 6.3390 -0.8600 42 1 10.2195 8.2036 -2.5536 43 1 7.7777 2.9616 -2.4242 44 1 6.3810 4.0427 -2.8525 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734109100.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:43 Heat of formation + Delta-G solvation = -34.170336 kcal Electronic energy + Delta-G solvation = -20861.829012 eV Core-core repulsion = 17814.050779 eV Total energy + Delta-G solvation = -3047.778233 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.17889 -39.75456 -36.97135 -36.08683 -34.17887 -33.09486 -31.34545 -29.33151 -27.46031 -26.63294 -25.82733 -24.86492 -22.82004 -21.74367 -21.15042 -20.31240 -18.78805 -17.87402 -17.33412 -16.85334 -16.48473 -15.96653 -15.75275 -15.35789 -14.98032 -14.90168 -14.60173 -14.14069 -13.95629 -13.50011 -13.28688 -13.25633 -13.09561 -13.08180 -12.96012 -12.71387 -12.63714 -12.39964 -12.09364 -12.02696 -11.83224 -11.79789 -11.70409 -11.53306 -11.36658 -11.21885 -10.86658 -10.58109 -9.98799 -8.93354 -7.91221 -5.25119 1.44597 1.48353 1.54539 1.74668 2.25392 2.46984 3.28718 3.38622 3.64627 3.82624 3.89490 3.97922 4.02625 4.27309 4.35091 4.41642 4.44799 4.48131 4.56967 4.69056 4.76429 4.84542 4.84861 4.85940 4.95538 4.95579 5.00997 5.07320 5.11436 5.18008 5.23898 5.28195 5.30180 5.34461 5.48582 5.52601 5.54567 5.60402 5.65584 5.93026 6.68558 6.90849 7.37553 7.59864 8.55773 9.25647 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.037814 B = 0.003369 C = 0.003248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.298508 B = 8308.670819 C = 8619.654752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.120 4.120 3 C -0.099 4.099 4 C -0.105 4.105 5 H 0.116 0.884 6 C -0.140 4.140 7 C 0.510 3.490 8 O -0.591 6.591 9 N -0.708 5.708 10 C 0.161 3.839 11 H 0.055 0.945 12 C -0.150 4.150 13 C -0.107 4.107 14 C 0.170 3.830 15 N -0.644 5.644 16 C -0.239 4.239 17 H 0.084 0.916 18 C -0.069 4.069 19 N -0.954 5.954 20 Si 0.980 3.020 21 H -0.280 1.280 22 H -0.294 1.294 23 H -0.272 1.272 24 C 0.128 3.872 25 H 0.065 0.935 26 H 0.051 0.949 27 H 0.046 0.954 28 H 0.069 0.931 29 H 0.079 0.921 30 H 0.053 0.947 31 H 0.046 0.954 32 H 0.072 0.928 33 H 0.050 0.950 34 H 0.089 0.911 35 H 0.414 0.586 36 H 0.060 0.940 37 H 0.049 0.951 38 H 0.075 0.925 39 H 0.106 0.894 40 H 0.009 0.991 41 H 0.046 0.954 42 H 0.249 0.751 43 H 0.064 0.936 44 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.442 -17.302 9.519 23.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.157 4.157 3 C -0.137 4.137 4 C -0.126 4.126 5 H 0.134 0.866 6 C -0.198 4.198 7 C 0.298 3.702 8 O -0.471 6.471 9 N -0.359 5.359 10 C 0.055 3.945 11 H 0.074 0.926 12 C -0.208 4.208 13 C -0.127 4.127 14 C 0.044 3.956 15 N -0.371 5.371 16 C -0.367 4.367 17 H 0.102 0.898 18 C -0.262 4.262 19 N -0.603 5.603 20 Si 0.808 3.192 21 H -0.206 1.206 22 H -0.220 1.220 23 H -0.198 1.198 24 C 0.003 3.997 25 H 0.084 0.916 26 H 0.070 0.930 27 H 0.065 0.935 28 H 0.088 0.912 29 H 0.098 0.902 30 H 0.072 0.928 31 H 0.065 0.935 32 H 0.091 0.909 33 H 0.070 0.930 34 H 0.108 0.892 35 H 0.250 0.750 36 H 0.079 0.921 37 H 0.068 0.932 38 H 0.094 0.906 39 H 0.124 0.876 40 H 0.026 0.974 41 H 0.065 0.935 42 H 0.058 0.942 43 H 0.082 0.918 44 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -12.733 -16.488 9.300 22.814 hybrid contribution 0.863 0.810 -0.944 1.514 sum -11.870 -15.678 8.356 21.366 Atomic orbital electron populations 1.21786 0.95888 1.02061 1.01501 1.21577 0.95937 0.95080 1.03123 1.21392 0.92761 0.97777 1.01742 1.21386 0.97395 0.91263 1.02539 0.86639 1.21831 1.01983 1.01936 0.94025 1.21389 0.81987 0.92373 0.74418 1.90673 1.56484 1.48299 1.51679 1.45976 1.07104 1.09025 1.73794 1.20710 0.93590 0.83263 0.96950 0.92645 1.22021 1.01690 1.01152 0.95956 1.23435 0.95394 0.98285 0.95603 1.22134 0.93887 0.92287 0.87317 1.46431 1.36737 1.18775 1.35124 1.19419 1.08203 1.01548 1.07541 0.89831 1.25666 1.02710 0.96412 1.01365 1.69994 1.44227 1.08701 1.37376 0.85129 0.78861 0.76816 0.78384 1.20605 1.22010 1.19801 1.22667 0.91768 0.92595 0.92674 0.91576 0.93022 0.93505 0.91195 0.90239 0.92780 0.93466 0.90857 0.93047 0.89236 0.74956 0.92122 0.93151 0.90634 0.87564 0.97366 0.93514 0.94206 0.91824 0.95233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 9.91 71.98 0.71 -1.31 16 2 C -0.12 -1.53 5.69 30.60 0.17 -1.36 16 3 C -0.10 -1.84 4.03 30.60 0.12 -1.72 16 4 C -0.10 -1.80 2.72 -11.54 -0.03 -1.83 16 5 H 0.12 1.57 8.14 -2.39 -0.02 1.55 16 6 C -0.14 -1.68 8.84 71.98 0.64 -1.04 16 7 C 0.51 13.32 7.12 87.65 0.62 13.94 16 8 O -0.59 -21.14 15.58 -3.05 -0.05 -21.19 16 9 N -0.71 -16.96 4.84 -442.52 -2.14 -19.10 16 10 C 0.16 4.92 2.29 44.99 0.10 5.03 16 11 H 0.06 2.08 7.48 -2.39 -0.02 2.06 16 12 C -0.15 -4.17 9.44 71.98 0.68 -3.49 16 13 C -0.11 -3.77 3.35 -10.14 -0.03 -3.80 16 14 C 0.17 8.16 6.98 86.44 0.60 8.76 16 15 N -0.64 -33.58 3.70 -716.12 -2.65 -36.23 16 16 C -0.24 -13.63 10.70 84.03 0.90 -12.73 16 17 H 0.08 4.53 7.83 -2.91 -0.02 4.50 16 18 C -0.07 -3.97 5.50 84.86 0.47 -3.51 16 19 N -0.95 -58.46 11.39 21.65 0.25 -58.22 16 20 Si 0.98 46.16 29.55 68.60 2.03 48.19 16 21 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 22 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 23 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 24 C 0.13 5.06 8.38 86.48 0.72 5.78 16 25 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 26 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 27 H 0.05 0.68 8.14 -2.38 -0.02 0.66 16 28 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.08 0.79 6.56 -2.39 -0.02 0.77 16 30 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.05 1.09 7.95 -2.39 -0.02 1.07 16 32 H 0.07 0.71 7.56 -2.38 -0.02 0.69 16 33 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.09 0.72 6.56 -2.39 -0.02 0.71 16 35 H 0.41 7.33 8.02 -92.71 -0.74 6.58 16 36 H 0.06 1.79 8.09 -2.39 -0.02 1.77 16 37 H 0.05 1.43 8.14 -2.39 -0.02 1.42 16 38 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 39 H 0.11 3.41 8.14 -2.39 -0.02 3.39 16 40 H 0.01 0.43 8.03 -2.39 -0.02 0.42 16 41 H 0.05 2.49 7.17 -2.39 -0.02 2.47 16 42 H 0.25 14.83 8.31 -92.71 -0.77 14.05 16 43 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 44 H 0.03 1.21 8.10 -2.39 -0.02 1.19 16 Total: -1.00 -72.67 352.58 3.32 -69.35 By element: Atomic # 1 Polarization: 14.25 SS G_CDS: 0.21 Total: 14.46 kcal Atomic # 6 Polarization: -2.95 SS G_CDS: 5.68 Total: 2.73 kcal Atomic # 7 Polarization: -109.00 SS G_CDS: -4.55 Total: -113.55 kcal Atomic # 8 Polarization: -21.14 SS G_CDS: -0.05 Total: -21.19 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 2.03 Total: 48.19 kcal Total: -72.67 3.32 -69.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734109100.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.178 kcal (2) G-P(sol) polarization free energy of solvation -72.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds