Wall clock time and date at job start Mon Mar 30 2020 00:53:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47195 * 2 1 4 4 C 1.53003 * 109.47195 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.46405 * 304.99650 * 4 3 2 6 6 C 1.53000 * 109.47349 * 64.99082 * 4 3 2 7 7 C 1.52999 * 109.47000 * 56.46695 * 6 4 3 8 8 C 1.50691 * 109.47165 * 184.99470 * 4 3 2 9 9 O 1.21282 * 120.00156 * 329.52173 * 8 4 3 10 10 N 1.34778 * 119.99975 * 149.52311 * 8 4 3 11 11 C 1.46504 * 120.00199 * 174.04676 * 10 8 4 12 12 H 1.09003 * 112.84728 * 23.80314 * 11 10 8 13 13 C 1.53780 * 113.61568 * 155.00135 * 11 10 8 14 14 C 1.53776 * 87.08108 * 89.11471 * 13 11 10 15 15 H 1.09000 * 113.61703 * 270.79768 * 14 13 11 16 16 N 1.46506 * 113.61288 * 139.98171 * 14 13 11 17 17 C 1.36932 * 119.99832 * 154.99871 * 16 14 13 18 18 H 1.07997 * 120.00514 * 359.97438 * 17 16 14 19 19 C 1.38810 * 119.99697 * 180.27421 * 17 16 14 20 20 N 1.31615 * 120.00229 * 359.72932 * 19 17 16 21 21 Si 1.86806 * 119.99842 * 179.72231 * 19 17 16 22 22 H 1.48507 * 109.46892 * 60.00459 * 21 19 17 23 23 H 1.48504 * 109.46919 * 179.97438 * 21 19 17 24 24 H 1.48490 * 109.47375 * 300.00319 * 21 19 17 25 25 C 1.53774 * 87.08272 * 25.43320 * 14 13 11 26 26 H 1.09000 * 109.47274 * 300.00846 * 1 2 3 27 27 H 1.09009 * 109.46482 * 60.00674 * 1 2 3 28 28 H 1.08996 * 109.47468 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47274 * 239.99154 * 2 1 3 30 30 H 1.09000 * 109.46275 * 119.99335 * 2 1 3 31 31 H 1.08992 * 109.47364 * 59.99416 * 3 2 1 32 32 H 1.09009 * 109.46855 * 299.99098 * 3 2 1 33 33 H 1.08993 * 109.47199 * 176.46834 * 6 4 3 34 34 H 1.09005 * 109.47261 * 296.46909 * 6 4 3 35 35 H 1.09000 * 109.47590 * 294.02539 * 7 6 4 36 36 H 1.09001 * 109.47287 * 54.02068 * 7 6 4 37 37 H 1.08995 * 109.47225 * 174.02402 * 7 6 4 38 38 H 0.96998 * 120.00063 * 354.04659 * 10 8 4 39 39 H 1.08997 * 113.61187 * 334.56479 * 13 11 10 40 40 H 1.08996 * 113.68784 * 203.67551 * 13 11 10 41 41 H 0.96998 * 120.00032 * 334.99849 * 16 14 13 42 42 H 0.97006 * 120.00369 * 179.97438 * 20 19 17 43 43 H 1.09003 * 113.61630 * 89.11588 * 25 14 13 44 44 H 1.09005 * 113.61454 * 220.02224 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4425 0.0006 5 1 3.9329 0.8532 0.8428 6 6 4.0807 0.8325 -1.3063 7 6 3.4999 1.6064 -2.4914 8 6 4.0723 2.8578 0.1243 9 8 3.4213 3.7743 -0.3307 10 7 5.2451 3.1053 0.7407 11 6 5.7972 4.4623 0.7472 12 1 5.0354 5.2298 0.6111 13 6 6.7440 4.7364 1.9276 14 6 7.8826 4.2202 1.0323 15 1 8.0430 3.1446 1.1064 16 7 9.1227 4.9901 1.1574 17 6 10.3248 4.4050 0.8611 18 1 10.3588 3.3758 0.5356 19 6 11.5002 5.1328 0.9852 20 7 11.4590 6.3869 1.3825 21 14 13.1407 4.3323 0.5885 22 1 13.1436 3.8849 -0.8276 23 1 14.2345 5.3144 0.7989 24 1 13.3482 3.1614 1.4779 25 6 7.0190 4.6346 -0.1706 26 1 -0.3634 0.5140 0.8899 27 1 -0.3632 0.5138 -0.8902 28 1 -0.3634 -1.0276 0.0005 29 1 1.8934 -0.5140 -0.8899 30 1 1.8932 -0.5138 0.8901 31 1 1.6767 1.9564 0.8898 32 1 1.6768 1.9563 -0.8902 33 1 5.1688 0.8896 -1.3332 34 1 3.7700 -0.2106 -1.3662 35 1 2.4201 1.4618 -2.5258 36 1 3.7208 2.6675 -2.3758 37 1 3.9450 1.2414 -3.4170 38 1 5.7236 2.3849 1.1799 39 1 6.5521 4.1070 2.7965 40 1 6.8329 5.7927 2.1815 41 1 9.0923 5.9144 1.4502 42 1 12.2804 6.8954 1.4696 43 1 7.1823 5.6635 -0.4916 44 1 7.0491 3.9229 -0.9957 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752672239.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:19 Heat of formation + Delta-G solvation = -34.602288 kcal Electronic energy + Delta-G solvation = -20745.491150 eV Core-core repulsion = 17697.694186 eV Total energy + Delta-G solvation = -3047.796964 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.26817 -38.36554 -36.32633 -34.01242 -33.11141 -32.41896 -29.93374 -28.93907 -25.58561 -25.11842 -24.39449 -23.13302 -22.16275 -21.16759 -19.45822 -18.89843 -17.18334 -16.92184 -16.10510 -15.67065 -15.37943 -14.97566 -14.37092 -14.09930 -13.83120 -13.66522 -13.45797 -13.25203 -12.83347 -12.63632 -12.23413 -12.04832 -11.97723 -11.85151 -11.66560 -11.42025 -11.20072 -11.15599 -10.89503 -10.80191 -10.75810 -10.60919 -10.30435 -10.24959 -9.91957 -9.56575 -9.51196 -8.90939 -8.72927 -6.99224 -5.80734 -3.09833 2.72273 3.27185 3.41387 3.45939 3.47009 4.51363 4.54555 4.56706 4.68985 4.90877 4.94844 5.01745 5.06899 5.20655 5.23448 5.37465 5.45499 5.45615 5.49841 5.49972 5.57893 5.67154 5.71206 5.83413 5.86956 5.90336 5.94010 5.99258 6.06468 6.11955 6.19106 6.26081 6.31752 6.32969 6.54024 6.64144 6.70927 7.09401 7.65428 7.66848 8.35801 8.37666 9.48742 10.06344 10.40753 11.41532 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.034436 B = 0.003297 C = 0.003178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.902483 B = 8489.304723 C = 8809.408668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.125 4.125 3 C -0.105 4.105 4 C -0.107 4.107 5 H 0.087 0.913 6 C -0.112 4.112 7 C -0.159 4.159 8 C 0.519 3.481 9 O -0.542 6.542 10 N -0.708 5.708 11 C 0.114 3.886 12 H 0.095 0.905 13 C -0.160 4.160 14 C 0.167 3.833 15 H 0.073 0.927 16 N -0.712 5.712 17 C -0.246 4.246 18 H 0.070 0.930 19 C -0.012 4.012 20 N -0.932 5.932 21 Si 0.908 3.092 22 H -0.286 1.286 23 H -0.291 1.291 24 H -0.286 1.286 25 C -0.176 4.176 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.052 0.948 29 H 0.065 0.935 30 H 0.060 0.940 31 H 0.063 0.937 32 H 0.078 0.922 33 H 0.067 0.933 34 H 0.074 0.926 35 H 0.058 0.942 36 H 0.065 0.935 37 H 0.052 0.948 38 H 0.399 0.601 39 H 0.063 0.937 40 H 0.090 0.910 41 H 0.386 0.614 42 H 0.257 0.743 43 H 0.085 0.915 44 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.987 -12.750 -2.104 22.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.143 4.143 4 C -0.129 4.129 5 H 0.105 0.895 6 C -0.149 4.149 7 C -0.216 4.216 8 C 0.306 3.694 9 O -0.419 6.419 10 N -0.358 5.358 11 C 0.009 3.991 12 H 0.113 0.887 13 C -0.200 4.200 14 C 0.055 3.945 15 H 0.091 0.909 16 N -0.350 5.350 17 C -0.377 4.377 18 H 0.088 0.912 19 C -0.208 4.208 20 N -0.580 5.580 21 Si 0.738 3.262 22 H -0.212 1.212 23 H -0.216 1.216 24 H -0.212 1.212 25 C -0.218 4.218 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.097 0.903 33 H 0.086 0.914 34 H 0.092 0.908 35 H 0.077 0.923 36 H 0.084 0.916 37 H 0.071 0.929 38 H 0.234 0.766 39 H 0.082 0.918 40 H 0.109 0.891 41 H 0.220 0.780 42 H 0.066 0.934 43 H 0.103 0.897 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -19.242 -12.168 -2.474 22.900 hybrid contribution 1.283 -0.393 0.119 1.347 sum -17.959 -12.561 -2.355 22.042 Atomic orbital electron populations 1.21764 0.95860 1.01418 1.01935 1.21582 0.95889 0.96700 1.02096 1.21518 0.92394 0.96830 1.03518 1.21378 0.97739 0.93606 1.00145 0.89464 1.21449 1.00789 0.99664 0.93036 1.21894 1.00993 1.01555 0.97205 1.20589 0.80543 0.91053 0.77241 1.90666 1.56710 1.46474 1.48080 1.45786 1.22613 1.11105 1.56304 1.21813 0.94941 0.83739 0.98633 0.88698 1.23849 0.96934 1.02494 0.96685 1.21607 0.85337 0.95414 0.92134 0.90909 1.42397 1.00732 1.12661 1.79225 1.19242 0.84457 0.96129 1.37866 0.91188 1.24770 0.97881 0.96119 1.02070 1.69647 1.27103 1.08185 1.53055 0.86264 0.83675 0.78099 0.78118 1.21221 1.21650 1.21229 1.24299 0.96039 1.02244 0.99223 0.92777 0.92698 0.92869 0.91652 0.92082 0.91865 0.90295 0.91439 0.90787 0.92350 0.91580 0.92891 0.76643 0.91838 0.89127 0.78016 0.93359 0.89667 0.92507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.91 37.16 0.37 -0.67 16 2 C -0.13 -0.90 5.69 -26.73 -0.15 -1.06 16 3 C -0.10 -0.98 3.91 -26.73 -0.10 -1.08 16 4 C -0.11 -1.03 2.50 -91.77 -0.23 -1.26 16 5 H 0.09 0.68 8.13 -51.93 -0.42 0.26 16 6 C -0.11 -1.01 5.37 -26.73 -0.14 -1.15 16 7 C -0.16 -1.64 9.13 37.16 0.34 -1.30 16 8 C 0.52 6.89 6.18 -10.99 -0.07 6.82 16 9 O -0.54 -9.13 14.74 5.56 0.08 -9.04 16 10 N -0.71 -9.13 5.26 -53.02 -0.28 -9.41 16 11 C 0.11 1.75 4.36 -67.12 -0.29 1.46 16 12 H 0.09 1.55 7.41 -51.93 -0.38 1.17 16 13 C -0.16 -2.55 7.58 -25.92 -0.20 -2.75 16 14 C 0.17 3.20 4.36 -67.12 -0.29 2.91 16 15 H 0.07 1.35 8.10 -51.93 -0.42 0.93 16 16 N -0.71 -17.61 5.40 -52.64 -0.28 -17.89 16 17 C -0.25 -6.74 9.97 -15.06 -0.15 -6.90 16 18 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 19 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 20 N -0.93 -27.98 13.06 55.49 0.72 -27.26 16 21 Si 0.91 22.17 29.55 -169.99 -5.02 17.15 16 22 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 23 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 24 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 25 C -0.18 -3.11 7.68 -25.92 -0.20 -3.31 16 26 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.05 0.38 8.14 -51.92 -0.42 -0.04 16 28 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.44 6.65 -51.93 -0.35 0.10 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.08 0.84 6.10 -51.92 -0.32 0.52 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.07 0.54 6.74 -51.93 -0.35 0.19 16 35 H 0.06 0.55 6.61 -51.93 -0.34 0.21 16 36 H 0.07 0.86 6.39 -51.93 -0.33 0.53 16 37 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.40 4.29 8.70 -40.82 -0.36 3.93 16 39 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.09 1.49 8.12 -51.93 -0.42 1.07 16 41 H 0.39 10.14 7.92 -40.82 -0.32 9.82 16 42 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 43 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 44 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 349.88 15.07 5.27 5.27 Total: -1.00 -31.23 349.88 -8.51 -39.74 By element: Atomic # 1 Polarization: 17.96 SS G_CDS: -7.79 Total: 10.17 kcal Atomic # 6 Polarization: -7.51 SS G_CDS: -1.22 Total: -8.73 kcal Atomic # 7 Polarization: -54.72 SS G_CDS: 0.16 Total: -54.56 kcal Atomic # 8 Polarization: -9.13 SS G_CDS: 0.08 Total: -9.04 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -31.23 -8.51 -39.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752672239.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.140 kcal (2) G-P(sol) polarization free energy of solvation -31.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds