Wall clock time and date at job start Mon Mar 30 2020 00:53:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47195 * 2 1 4 4 C 1.53003 * 109.47195 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.46405 * 304.99650 * 4 3 2 6 6 C 1.53000 * 109.47349 * 64.99082 * 4 3 2 7 7 C 1.52999 * 109.47000 * 56.46695 * 6 4 3 8 8 C 1.50691 * 109.47165 * 184.99470 * 4 3 2 9 9 O 1.21282 * 120.00156 * 329.52173 * 8 4 3 10 10 N 1.34778 * 119.99975 * 149.52311 * 8 4 3 11 11 C 1.46504 * 120.00199 * 174.04676 * 10 8 4 12 12 H 1.09003 * 112.84728 * 23.80314 * 11 10 8 13 13 C 1.53780 * 113.61568 * 155.00135 * 11 10 8 14 14 C 1.53776 * 87.08108 * 89.11471 * 13 11 10 15 15 H 1.09000 * 113.61703 * 270.79768 * 14 13 11 16 16 N 1.46506 * 113.61288 * 139.98171 * 14 13 11 17 17 C 1.36932 * 119.99832 * 154.99871 * 16 14 13 18 18 H 1.07997 * 120.00514 * 359.97438 * 17 16 14 19 19 C 1.38810 * 119.99697 * 180.27421 * 17 16 14 20 20 N 1.31615 * 120.00229 * 359.72932 * 19 17 16 21 21 Si 1.86806 * 119.99842 * 179.72231 * 19 17 16 22 22 H 1.48507 * 109.46892 * 60.00459 * 21 19 17 23 23 H 1.48504 * 109.46919 * 179.97438 * 21 19 17 24 24 H 1.48490 * 109.47375 * 300.00319 * 21 19 17 25 25 C 1.53774 * 87.08272 * 25.43320 * 14 13 11 26 26 H 1.09000 * 109.47274 * 300.00846 * 1 2 3 27 27 H 1.09009 * 109.46482 * 60.00674 * 1 2 3 28 28 H 1.08996 * 109.47468 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47274 * 239.99154 * 2 1 3 30 30 H 1.09000 * 109.46275 * 119.99335 * 2 1 3 31 31 H 1.08992 * 109.47364 * 59.99416 * 3 2 1 32 32 H 1.09009 * 109.46855 * 299.99098 * 3 2 1 33 33 H 1.08993 * 109.47199 * 176.46834 * 6 4 3 34 34 H 1.09005 * 109.47261 * 296.46909 * 6 4 3 35 35 H 1.09000 * 109.47590 * 294.02539 * 7 6 4 36 36 H 1.09001 * 109.47287 * 54.02068 * 7 6 4 37 37 H 1.08995 * 109.47225 * 174.02402 * 7 6 4 38 38 H 0.96998 * 120.00063 * 354.04659 * 10 8 4 39 39 H 1.08997 * 113.61187 * 334.56479 * 13 11 10 40 40 H 1.08996 * 113.68784 * 203.67551 * 13 11 10 41 41 H 0.96998 * 120.00032 * 334.99849 * 16 14 13 42 42 H 0.97006 * 120.00369 * 179.97438 * 20 19 17 43 43 H 1.09003 * 113.61630 * 89.11588 * 25 14 13 44 44 H 1.09005 * 113.61454 * 220.02224 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4425 0.0006 5 1 3.9329 0.8532 0.8428 6 6 4.0807 0.8325 -1.3063 7 6 3.4999 1.6064 -2.4914 8 6 4.0723 2.8578 0.1243 9 8 3.4213 3.7743 -0.3307 10 7 5.2451 3.1053 0.7407 11 6 5.7972 4.4623 0.7472 12 1 5.0354 5.2298 0.6111 13 6 6.7440 4.7364 1.9276 14 6 7.8826 4.2202 1.0323 15 1 8.0430 3.1446 1.1064 16 7 9.1227 4.9901 1.1574 17 6 10.3248 4.4050 0.8611 18 1 10.3588 3.3758 0.5356 19 6 11.5002 5.1328 0.9852 20 7 11.4590 6.3869 1.3825 21 14 13.1407 4.3323 0.5885 22 1 13.1436 3.8849 -0.8276 23 1 14.2345 5.3144 0.7989 24 1 13.3482 3.1614 1.4779 25 6 7.0190 4.6346 -0.1706 26 1 -0.3634 0.5140 0.8899 27 1 -0.3632 0.5138 -0.8902 28 1 -0.3634 -1.0276 0.0005 29 1 1.8934 -0.5140 -0.8899 30 1 1.8932 -0.5138 0.8901 31 1 1.6767 1.9564 0.8898 32 1 1.6768 1.9563 -0.8902 33 1 5.1688 0.8896 -1.3332 34 1 3.7700 -0.2106 -1.3662 35 1 2.4201 1.4618 -2.5258 36 1 3.7208 2.6675 -2.3758 37 1 3.9450 1.2414 -3.4170 38 1 5.7236 2.3849 1.1799 39 1 6.5521 4.1070 2.7965 40 1 6.8329 5.7927 2.1815 41 1 9.0923 5.9144 1.4502 42 1 12.2804 6.8954 1.4696 43 1 7.1823 5.6635 -0.4916 44 1 7.0491 3.9229 -0.9957 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752672239.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:19 Heat of formation + Delta-G solvation = -54.315100 kcal Electronic energy + Delta-G solvation = -20746.345962 eV Core-core repulsion = 17697.694186 eV Total energy + Delta-G solvation = -3048.651776 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.39106 -39.66448 -37.22234 -35.74557 -34.15101 -33.55602 -31.79135 -29.74165 -26.74638 -26.53045 -25.86462 -24.20665 -23.47032 -22.08541 -20.42251 -20.26000 -19.11408 -18.01128 -17.05552 -16.83526 -16.58306 -16.29694 -15.83725 -15.51919 -15.01538 -14.74098 -14.42388 -14.30573 -14.08127 -13.55651 -13.47570 -13.37696 -13.32305 -12.91239 -12.77303 -12.71970 -12.60709 -12.21286 -12.14008 -11.88785 -11.85179 -11.79891 -11.73065 -11.49803 -11.29222 -11.19700 -10.83753 -10.57563 -9.97129 -8.99296 -7.94581 -5.23358 1.47967 1.50755 1.56785 1.66957 2.21415 2.56843 3.36689 3.67416 3.72643 3.81220 3.82812 3.95807 3.97973 4.27018 4.30233 4.31836 4.33572 4.39101 4.44757 4.68650 4.71639 4.76789 4.82853 4.89975 4.92962 4.94218 5.00468 5.11770 5.12221 5.18751 5.21003 5.21808 5.26243 5.32795 5.41814 5.45563 5.50874 5.59489 5.73465 6.27122 6.63574 7.32024 7.33322 8.09851 8.32381 9.28568 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.034436 B = 0.003297 C = 0.003178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.902483 B = 8489.304723 C = 8809.408668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.119 4.119 3 C -0.102 4.102 4 C -0.100 4.100 5 H 0.116 0.884 6 C -0.109 4.109 7 C -0.159 4.159 8 C 0.516 3.484 9 O -0.582 6.582 10 N -0.701 5.701 11 C 0.133 3.867 12 H 0.085 0.915 13 C -0.144 4.144 14 C 0.155 3.845 15 H 0.084 0.916 16 N -0.728 5.728 17 C -0.245 4.245 18 H 0.079 0.921 19 C -0.077 4.077 20 N -0.971 5.971 21 Si 0.973 3.027 22 H -0.279 1.279 23 H -0.298 1.298 24 H -0.275 1.275 25 C -0.172 4.172 26 H 0.050 0.950 27 H 0.049 0.951 28 H 0.064 0.936 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.052 0.948 32 H 0.060 0.940 33 H 0.065 0.935 34 H 0.101 0.899 35 H 0.063 0.937 36 H 0.032 0.968 37 H 0.060 0.940 38 H 0.413 0.587 39 H 0.086 0.914 40 H 0.084 0.916 41 H 0.373 0.627 42 H 0.251 0.749 43 H 0.067 0.933 44 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.603 -15.613 -1.857 25.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.157 4.157 3 C -0.140 4.140 4 C -0.121 4.121 5 H 0.134 0.866 6 C -0.146 4.146 7 C -0.216 4.216 8 C 0.304 3.696 9 O -0.461 6.461 10 N -0.352 5.352 11 C 0.026 3.974 12 H 0.104 0.896 13 C -0.183 4.183 14 C 0.046 3.954 15 H 0.102 0.898 16 N -0.365 5.365 17 C -0.377 4.377 18 H 0.097 0.903 19 C -0.269 4.269 20 N -0.621 5.621 21 Si 0.802 3.198 22 H -0.205 1.205 23 H -0.224 1.224 24 H -0.201 1.201 25 C -0.214 4.214 26 H 0.069 0.931 27 H 0.068 0.932 28 H 0.083 0.917 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.071 0.929 32 H 0.079 0.921 33 H 0.084 0.916 34 H 0.120 0.880 35 H 0.082 0.918 36 H 0.051 0.949 37 H 0.079 0.921 38 H 0.250 0.750 39 H 0.104 0.896 40 H 0.102 0.898 41 H 0.205 0.795 42 H 0.059 0.941 43 H 0.085 0.915 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -19.896 -15.099 -2.227 25.076 hybrid contribution 1.364 0.488 0.002 1.449 sum -18.533 -14.610 -2.225 23.704 Atomic orbital electron populations 1.21781 0.95781 1.02047 1.01564 1.21555 0.95956 0.95067 1.03104 1.21483 0.92150 0.98170 1.02180 1.21439 0.97840 0.91199 1.01664 0.86576 1.21486 1.00567 1.00792 0.91800 1.21874 1.01637 0.99645 0.98427 1.21331 0.79952 0.92303 0.76008 1.90655 1.57816 1.48108 1.49538 1.45712 1.22704 1.10398 1.56353 1.21462 0.93765 0.85090 0.97058 0.89649 1.23666 0.94986 1.02450 0.97237 1.21938 0.84125 0.95575 0.93813 0.89761 1.42602 1.01858 1.12566 1.79472 1.19677 0.85523 0.96410 1.36047 0.90292 1.25591 1.01405 0.96771 1.03183 1.69810 1.27411 1.09675 1.55241 0.85222 0.79288 0.77167 0.78150 1.20546 1.22429 1.20060 1.24141 0.97137 1.01125 0.98999 0.93118 0.93212 0.91712 0.90751 0.90839 0.92902 0.92089 0.91626 0.88022 0.91786 0.94904 0.92090 0.74986 0.89576 0.89787 0.79459 0.94051 0.91472 0.92584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 9.91 71.98 0.71 -1.08 16 2 C -0.12 -1.38 5.69 30.60 0.17 -1.21 16 3 C -0.10 -1.72 3.91 30.60 0.12 -1.60 16 4 C -0.10 -1.68 2.50 -11.54 -0.03 -1.71 16 5 H 0.12 1.32 8.13 -2.39 -0.02 1.31 16 6 C -0.11 -1.68 5.37 30.59 0.16 -1.51 16 7 C -0.16 -3.08 9.13 71.98 0.66 -2.42 16 8 C 0.52 13.00 6.18 87.65 0.54 13.54 16 9 O -0.58 -19.59 14.74 -3.04 -0.04 -19.63 16 10 N -0.70 -16.74 5.26 -440.04 -2.31 -19.06 16 11 C 0.13 3.94 4.36 45.52 0.20 4.14 16 12 H 0.09 2.78 7.41 -2.39 -0.02 2.76 16 13 C -0.14 -4.40 7.58 31.12 0.24 -4.16 16 14 C 0.16 5.80 4.36 45.51 0.20 6.00 16 15 H 0.08 2.95 8.10 -2.39 -0.02 2.93 16 16 N -0.73 -36.04 5.40 -320.46 -1.73 -37.77 16 17 C -0.24 -13.34 9.97 84.03 0.84 -12.51 16 18 H 0.08 4.07 7.83 -2.91 -0.02 4.05 16 19 C -0.08 -4.41 5.50 84.86 0.47 -3.94 16 20 N -0.97 -59.32 13.06 21.65 0.28 -59.04 16 21 Si 0.97 45.58 29.55 68.60 2.03 47.61 16 22 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 23 H -0.30 -14.18 7.11 99.48 0.71 -13.47 16 24 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 25 C -0.17 -6.04 7.68 31.12 0.24 -5.80 16 26 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 27 H 0.05 0.62 8.14 -2.38 -0.02 0.60 16 28 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.07 0.74 6.65 -2.39 -0.02 0.73 16 30 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.06 1.25 6.10 -2.38 -0.01 1.24 16 33 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.10 1.07 6.74 -2.38 -0.02 1.05 16 35 H 0.06 1.14 6.61 -2.39 -0.02 1.13 16 36 H 0.03 0.85 6.39 -2.39 -0.02 0.84 16 37 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.41 7.63 8.70 -92.71 -0.81 6.82 16 39 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 40 H 0.08 2.73 8.12 -2.39 -0.02 2.71 16 41 H 0.37 20.03 7.92 -92.71 -0.73 19.30 16 42 H 0.25 14.92 8.31 -92.70 -0.77 14.15 16 43 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 44 H 0.06 1.95 8.14 -2.38 -0.02 1.93 16 Total: -1.00 -68.01 349.88 2.18 -65.83 By element: Atomic # 1 Polarization: 34.89 SS G_CDS: -0.56 Total: 34.33 kcal Atomic # 6 Polarization: -16.79 SS G_CDS: 4.52 Total: -12.28 kcal Atomic # 7 Polarization: -112.10 SS G_CDS: -3.76 Total: -115.86 kcal Atomic # 8 Polarization: -19.59 SS G_CDS: -0.04 Total: -19.63 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.61 kcal Total: -68.01 2.18 -65.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752672239.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.518 kcal (2) G-P(sol) polarization free energy of solvation -68.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds