Wall clock time and date at job start Mon Mar 30 2020 00:28:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53006 * 109.47011 * 2 1 4 4 C 1.53001 * 109.46776 * 179.97438 * 3 2 1 5 5 C 1.50708 * 109.46662 * 179.97438 * 4 3 2 6 6 O 1.21283 * 120.00057 * 359.97438 * 5 4 3 7 7 N 1.34770 * 119.99673 * 180.02562 * 5 4 3 8 8 C 1.46927 * 120.63304 * 0.02562 * 7 5 4 9 9 C 1.53196 * 108.77413 * 233.58546 * 8 7 5 10 10 C 1.53031 * 109.31477 * 305.36304 * 9 8 7 11 11 H 1.08995 * 109.46212 * 301.34533 * 10 9 8 12 12 N 1.46502 * 109.46052 * 181.38564 * 10 9 8 13 13 C 1.36936 * 120.00093 * 84.93628 * 12 10 9 14 14 H 1.08003 * 119.99769 * 359.97438 * 13 12 10 15 15 C 1.38814 * 120.00121 * 180.02562 * 13 12 10 16 16 N 1.31617 * 119.99975 * 179.97438 * 15 13 12 17 17 Si 1.86799 * 119.99689 * 359.97438 * 15 13 12 18 18 H 1.48496 * 109.47381 * 90.00297 * 17 15 13 19 19 H 1.48504 * 109.46631 * 209.99766 * 17 15 13 20 20 H 1.48498 * 109.47497 * 329.99619 * 17 15 13 21 21 C 1.53046 * 109.53726 * 61.36734 * 10 9 8 22 22 H 1.08990 * 109.49711 * 58.58414 * 21 10 9 23 23 C 1.52997 * 109.49842 * 178.68561 * 21 10 9 24 24 C 1.46923 * 120.63141 * 179.97438 * 7 5 4 25 25 H 1.08996 * 109.46795 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47165 * 300.00237 * 1 2 3 27 27 H 1.08991 * 109.46751 * 60.00075 * 1 2 3 28 28 H 1.08995 * 109.47527 * 239.99706 * 2 1 3 29 29 H 1.08998 * 109.46860 * 119.99517 * 2 1 3 30 30 H 1.09002 * 109.47350 * 59.99876 * 3 2 1 31 31 H 1.09003 * 109.47046 * 299.99939 * 3 2 1 32 32 H 1.08996 * 109.46815 * 60.00261 * 4 3 2 33 33 H 1.08998 * 109.47155 * 299.99553 * 4 3 2 34 34 H 1.08993 * 109.58956 * 113.79989 * 8 7 5 35 35 H 1.08999 * 109.70338 * 353.44355 * 8 7 5 36 36 H 1.09004 * 109.49841 * 185.40709 * 9 8 7 37 37 H 1.09000 * 109.49679 * 65.31895 * 9 8 7 38 38 H 0.97004 * 119.99811 * 264.92896 * 12 10 9 39 39 H 0.97000 * 120.00011 * 180.02562 * 16 15 13 40 40 H 1.09003 * 109.47396 * 59.99211 * 23 21 10 41 41 H 1.09001 * 109.47538 * 180.02562 * 23 21 10 42 42 H 1.09004 * 109.47024 * 299.99993 * 23 21 10 43 43 H 1.09009 * 109.58590 * 6.62804 * 24 7 5 44 44 H 1.08995 * 109.59117 * 246.20038 * 24 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 6 3.5701 1.4425 0.0006 5 6 4.0724 2.8634 0.0000 6 8 3.2842 3.7852 -0.0013 7 7 5.3974 3.1097 -0.0001 8 6 6.3644 2.0035 -0.0002 9 6 7.3373 2.1990 1.1670 10 6 7.9716 3.5883 1.0699 11 1 8.4908 3.6846 0.1165 12 7 8.9272 3.7661 2.1660 13 6 10.2126 3.3126 2.0340 14 1 10.5216 2.8235 1.1221 15 6 11.1180 3.4807 3.0728 16 7 12.3532 3.0443 2.9461 17 14 10.5831 4.3261 4.6503 18 1 10.0592 3.3134 5.6016 19 1 11.7462 5.0212 5.2581 20 1 9.5190 5.3160 4.3452 21 6 6.8803 4.6570 1.1665 22 1 6.3444 4.5456 2.1090 23 6 7.5187 6.0460 1.1023 24 6 5.9024 4.4894 -0.0013 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3632 0.5138 -0.8899 28 1 1.8935 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.6767 1.9564 0.8900 31 1 1.6767 1.9564 -0.8900 32 1 3.9337 0.9286 -0.8891 33 1 3.9330 0.9289 0.8909 34 1 6.9168 2.0011 -0.9397 35 1 5.8388 1.0558 0.1170 36 1 8.1173 1.4389 1.1217 37 1 6.7970 2.1107 2.1096 38 1 8.6495 4.2053 2.9851 39 1 12.9858 3.1614 3.6721 40 1 8.0533 6.1569 0.1589 41 1 6.7413 6.8068 1.1716 42 1 8.2167 6.1637 1.9313 43 1 5.0700 5.1833 0.1166 44 1 6.4172 4.6893 -0.9409 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753750690.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:28:45 Heat of formation + Delta-G solvation = -49.142186 kcal Electronic energy + Delta-G solvation = -21172.456053 eV Core-core repulsion = 18124.028592 eV Total energy + Delta-G solvation = -3048.427461 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.19557 -37.89358 -35.51414 -34.73826 -32.96288 -31.59040 -30.67456 -29.81501 -26.77490 -25.39201 -24.06373 -22.52686 -21.61085 -21.27137 -19.97285 -18.86972 -17.55903 -16.92047 -16.12880 -15.82017 -15.00021 -14.84480 -14.38969 -13.92197 -13.87335 -13.70718 -13.49983 -13.31323 -12.73925 -12.55788 -12.44944 -12.31406 -11.95667 -11.78326 -11.54411 -11.49100 -11.25249 -11.17926 -11.06138 -10.89396 -10.77116 -10.68889 -10.53264 -10.25049 -9.79353 -9.68172 -9.60796 -8.95481 -8.51415 -7.30306 -5.80782 -3.16141 2.68644 3.07558 3.34555 3.37985 3.43156 4.44218 4.55775 4.67702 4.74336 4.91993 5.01519 5.05247 5.12509 5.17927 5.25250 5.30813 5.39603 5.47484 5.56178 5.58790 5.61091 5.62223 5.71465 5.72519 5.84759 5.91143 5.96961 6.02607 6.06073 6.11072 6.18175 6.27268 6.28436 6.41053 6.51796 6.66834 6.77598 6.92759 7.49982 7.94877 8.23813 8.38444 9.16681 9.89587 10.09658 11.37537 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.028115 B = 0.003992 C = 0.003794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.669686 B = 7011.599790 C = 7378.240295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C -0.104 4.104 4 C -0.140 4.140 5 C 0.513 3.487 6 O -0.552 6.552 7 N -0.609 5.609 8 C 0.107 3.893 9 C -0.153 4.153 10 C 0.189 3.811 11 H 0.056 0.944 12 N -0.745 5.745 13 C -0.242 4.242 14 H 0.090 0.910 15 C 0.005 3.995 16 N -0.934 5.934 17 Si 0.882 3.118 18 H -0.285 1.285 19 H -0.291 1.291 20 H -0.277 1.277 21 C -0.113 4.113 22 H 0.067 0.933 23 C -0.138 4.138 24 C 0.120 3.880 25 H 0.052 0.948 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.091 0.909 33 H 0.093 0.907 34 H 0.069 0.931 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.058 0.942 38 H 0.361 0.639 39 H 0.259 0.741 40 H 0.055 0.945 41 H 0.045 0.955 42 H 0.067 0.933 43 H 0.088 0.912 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.787 -3.867 -6.993 20.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.142 4.142 4 C -0.180 4.180 5 C 0.301 3.699 6 O -0.430 6.430 7 N -0.342 5.342 8 C -0.017 4.017 9 C -0.194 4.194 10 C 0.079 3.921 11 H 0.074 0.926 12 N -0.387 5.387 13 C -0.372 4.372 14 H 0.108 0.892 15 C -0.191 4.191 16 N -0.581 5.581 17 Si 0.713 3.287 18 H -0.212 1.212 19 H -0.218 1.218 20 H -0.203 1.203 21 C -0.134 4.134 22 H 0.086 0.914 23 C -0.195 4.195 24 C -0.003 4.003 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.110 0.890 33 H 0.111 0.889 34 H 0.087 0.913 35 H 0.098 0.902 36 H 0.099 0.901 37 H 0.077 0.923 38 H 0.194 0.806 39 H 0.069 0.931 40 H 0.074 0.926 41 H 0.064 0.936 42 H 0.086 0.914 43 H 0.106 0.894 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -18.951 -3.471 -7.078 20.525 hybrid contribution -0.012 0.440 1.295 1.367 sum -18.963 -3.031 -5.784 20.056 Atomic orbital electron populations 1.21759 0.95811 1.01436 1.01962 1.21556 0.96033 0.96708 1.02024 1.21377 0.92917 0.96445 1.03475 1.21727 0.97805 0.94237 1.04266 1.20719 0.81780 0.91694 0.75685 1.90661 1.54943 1.46676 1.50740 1.48216 1.05537 1.07803 1.72614 1.21865 0.90929 0.88821 1.00042 1.22649 0.98129 1.01796 0.96778 1.20165 0.88635 0.90516 0.92789 0.92551 1.42778 1.09272 1.71315 1.15356 1.19049 0.85094 1.31197 1.01839 0.89211 1.24658 0.95567 1.00875 0.97956 1.69695 1.03723 1.51740 1.32989 0.86584 0.77507 0.79715 0.84895 1.21177 1.21786 1.20306 1.21793 0.96457 0.96887 0.98215 0.91407 1.21674 1.00126 0.94692 1.03052 1.21670 0.97591 0.82640 0.98372 0.92846 0.92697 0.92726 0.91999 0.91942 0.91317 0.91346 0.89033 0.88878 0.91304 0.90234 0.90057 0.92301 0.80635 0.93058 0.92574 0.93592 0.91418 0.89385 0.91525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.91 37.16 0.37 -0.73 16 2 C -0.13 -0.96 5.93 -26.72 -0.16 -1.12 16 3 C -0.10 -1.01 4.50 -26.73 -0.12 -1.13 16 4 C -0.14 -1.39 4.05 -27.88 -0.11 -1.50 16 5 C 0.51 7.02 7.70 -10.98 -0.08 6.93 16 6 O -0.55 -9.38 15.40 5.55 0.09 -9.29 16 7 N -0.61 -8.15 2.97 -172.74 -0.51 -8.67 16 8 C 0.11 1.29 6.34 -3.71 -0.02 1.26 16 9 C -0.15 -2.38 5.66 -26.61 -0.15 -2.53 16 10 C 0.19 3.38 2.19 -67.89 -0.15 3.23 16 11 H 0.06 1.06 8.08 -51.93 -0.42 0.64 16 12 N -0.75 -16.69 4.21 -53.39 -0.22 -16.92 16 13 C -0.24 -6.51 10.41 -15.06 -0.16 -6.67 16 14 H 0.09 2.59 8.06 -52.48 -0.42 2.16 16 15 C 0.01 0.15 5.50 -17.43 -0.10 0.05 16 16 N -0.93 -28.73 13.97 55.49 0.78 -27.95 16 17 Si 0.88 21.75 27.73 -169.99 -4.71 17.04 16 18 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 19 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 20 H -0.28 -6.42 6.52 56.52 0.37 -6.06 16 21 C -0.11 -1.77 2.46 -90.47 -0.22 -1.99 16 22 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 23 C -0.14 -2.11 9.03 37.16 0.34 -1.77 16 24 C 0.12 1.69 5.72 -3.69 -0.02 1.66 16 25 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.75 8.10 -51.93 -0.42 0.33 16 31 H 0.07 0.72 8.10 -51.93 -0.42 0.30 16 32 H 0.09 0.74 7.94 -51.93 -0.41 0.33 16 33 H 0.09 0.83 7.70 -51.93 -0.40 0.43 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.08 0.77 5.95 -51.93 -0.31 0.46 16 36 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 37 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.36 8.14 5.36 -40.82 -0.22 7.92 16 39 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 40 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.07 1.19 7.36 -51.93 -0.38 0.81 16 43 H 0.09 1.30 7.01 -51.92 -0.36 0.94 16 44 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 344.08 15.07 5.19 5.19 Total: -1.00 -31.42 344.08 -8.01 -39.43 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: -8.01 Total: 5.48 kcal Atomic # 6 Polarization: -3.72 SS G_CDS: -0.59 Total: -4.31 kcal Atomic # 7 Polarization: -53.57 SS G_CDS: 0.04 Total: -53.54 kcal Atomic # 8 Polarization: -9.38 SS G_CDS: 0.09 Total: -9.29 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.71 Total: 17.04 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.42 -8.01 -39.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753750690.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.709 kcal (2) G-P(sol) polarization free energy of solvation -31.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds