Wall clock time and date at job start Mon Mar 30 2020 00:28:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53006 * 109.47011 * 2 1 4 4 C 1.53001 * 109.46776 * 179.97438 * 3 2 1 5 5 C 1.50708 * 109.46662 * 179.97438 * 4 3 2 6 6 O 1.21283 * 120.00057 * 359.97438 * 5 4 3 7 7 N 1.34770 * 119.99673 * 180.02562 * 5 4 3 8 8 C 1.46927 * 120.63304 * 0.02562 * 7 5 4 9 9 C 1.53196 * 108.77413 * 233.58546 * 8 7 5 10 10 C 1.53031 * 109.31477 * 305.36304 * 9 8 7 11 11 H 1.08995 * 109.46212 * 301.34533 * 10 9 8 12 12 N 1.46502 * 109.46052 * 181.38564 * 10 9 8 13 13 C 1.36936 * 120.00093 * 84.93628 * 12 10 9 14 14 H 1.08003 * 119.99769 * 359.97438 * 13 12 10 15 15 C 1.38814 * 120.00121 * 180.02562 * 13 12 10 16 16 N 1.31617 * 119.99975 * 179.97438 * 15 13 12 17 17 Si 1.86799 * 119.99689 * 359.97438 * 15 13 12 18 18 H 1.48496 * 109.47381 * 90.00297 * 17 15 13 19 19 H 1.48504 * 109.46631 * 209.99766 * 17 15 13 20 20 H 1.48498 * 109.47497 * 329.99619 * 17 15 13 21 21 C 1.53046 * 109.53726 * 61.36734 * 10 9 8 22 22 H 1.08990 * 109.49711 * 58.58414 * 21 10 9 23 23 C 1.52997 * 109.49842 * 178.68561 * 21 10 9 24 24 C 1.46923 * 120.63141 * 179.97438 * 7 5 4 25 25 H 1.08996 * 109.46795 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47165 * 300.00237 * 1 2 3 27 27 H 1.08991 * 109.46751 * 60.00075 * 1 2 3 28 28 H 1.08995 * 109.47527 * 239.99706 * 2 1 3 29 29 H 1.08998 * 109.46860 * 119.99517 * 2 1 3 30 30 H 1.09002 * 109.47350 * 59.99876 * 3 2 1 31 31 H 1.09003 * 109.47046 * 299.99939 * 3 2 1 32 32 H 1.08996 * 109.46815 * 60.00261 * 4 3 2 33 33 H 1.08998 * 109.47155 * 299.99553 * 4 3 2 34 34 H 1.08993 * 109.58956 * 113.79989 * 8 7 5 35 35 H 1.08999 * 109.70338 * 353.44355 * 8 7 5 36 36 H 1.09004 * 109.49841 * 185.40709 * 9 8 7 37 37 H 1.09000 * 109.49679 * 65.31895 * 9 8 7 38 38 H 0.97004 * 119.99811 * 264.92896 * 12 10 9 39 39 H 0.97000 * 120.00011 * 180.02562 * 16 15 13 40 40 H 1.09003 * 109.47396 * 59.99211 * 23 21 10 41 41 H 1.09001 * 109.47538 * 180.02562 * 23 21 10 42 42 H 1.09004 * 109.47024 * 299.99993 * 23 21 10 43 43 H 1.09009 * 109.58590 * 6.62804 * 24 7 5 44 44 H 1.08995 * 109.59117 * 246.20038 * 24 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 6 3.5701 1.4425 0.0006 5 6 4.0724 2.8634 0.0000 6 8 3.2842 3.7852 -0.0013 7 7 5.3974 3.1097 -0.0001 8 6 6.3644 2.0035 -0.0002 9 6 7.3373 2.1990 1.1670 10 6 7.9716 3.5883 1.0699 11 1 8.4908 3.6846 0.1165 12 7 8.9272 3.7661 2.1660 13 6 10.2126 3.3126 2.0340 14 1 10.5216 2.8235 1.1221 15 6 11.1180 3.4807 3.0728 16 7 12.3532 3.0443 2.9461 17 14 10.5831 4.3261 4.6503 18 1 10.0592 3.3134 5.6016 19 1 11.7462 5.0212 5.2581 20 1 9.5190 5.3160 4.3452 21 6 6.8803 4.6570 1.1665 22 1 6.3444 4.5456 2.1090 23 6 7.5187 6.0460 1.1023 24 6 5.9024 4.4894 -0.0013 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3632 0.5138 -0.8899 28 1 1.8935 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.6767 1.9564 0.8900 31 1 1.6767 1.9564 -0.8900 32 1 3.9337 0.9286 -0.8891 33 1 3.9330 0.9289 0.8909 34 1 6.9168 2.0011 -0.9397 35 1 5.8388 1.0558 0.1170 36 1 8.1173 1.4389 1.1217 37 1 6.7970 2.1107 2.1096 38 1 8.6495 4.2053 2.9851 39 1 12.9858 3.1614 3.6721 40 1 8.0533 6.1569 0.1589 41 1 6.7413 6.8068 1.1716 42 1 8.2167 6.1637 1.9313 43 1 5.0700 5.1833 0.1166 44 1 6.4172 4.6893 -0.9409 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753750690.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:28:45 Heat of formation + Delta-G solvation = -68.039250 kcal Electronic energy + Delta-G solvation = -21173.275491 eV Core-core repulsion = 18124.028592 eV Total energy + Delta-G solvation = -3049.246899 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.31071 -39.17378 -36.34810 -36.16041 -34.49326 -33.23485 -31.60239 -31.27833 -27.87009 -26.83707 -25.12597 -23.95359 -23.00569 -22.00260 -21.34542 -20.05591 -19.37821 -18.01841 -16.98424 -16.89798 -16.72579 -16.04234 -15.77662 -15.26234 -14.99118 -14.83444 -14.54881 -14.43653 -14.36268 -13.76144 -13.60260 -13.39827 -13.19890 -12.96306 -12.95197 -12.83725 -12.45315 -12.19179 -12.09908 -12.05231 -11.93588 -11.88650 -11.82559 -11.75640 -11.42384 -11.18757 -10.95806 -10.72761 -9.65302 -9.26898 -8.00033 -5.31769 1.38121 1.39305 1.46789 1.64709 2.04488 2.49204 3.31780 3.49494 3.57785 3.80864 3.93778 4.00460 4.06200 4.08319 4.26843 4.35338 4.37730 4.47744 4.50350 4.61339 4.66113 4.71599 4.77470 4.81757 4.84633 4.95407 4.97236 5.00877 5.02819 5.13520 5.16847 5.26428 5.31490 5.36402 5.41380 5.49099 5.52764 5.63338 5.80499 6.24306 6.45547 7.10261 7.18858 7.87344 8.05555 9.21556 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.028115 B = 0.003992 C = 0.003794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.669686 B = 7011.599790 C = 7378.240295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.121 4.121 3 C -0.101 4.101 4 C -0.135 4.135 5 C 0.508 3.492 6 O -0.590 6.590 7 N -0.610 5.610 8 C 0.114 3.886 9 C -0.145 4.145 10 C 0.181 3.819 11 H 0.048 0.952 12 N -0.748 5.748 13 C -0.217 4.217 14 H 0.062 0.938 15 C -0.063 4.063 16 N -0.984 5.984 17 Si 0.947 3.053 18 H -0.282 1.282 19 H -0.300 1.300 20 H -0.255 1.255 21 C -0.103 4.103 22 H 0.061 0.939 23 C -0.135 4.135 24 C 0.125 3.875 25 H 0.064 0.936 26 H 0.048 0.952 27 H 0.051 0.949 28 H 0.074 0.926 29 H 0.069 0.931 30 H 0.049 0.951 31 H 0.055 0.945 32 H 0.118 0.882 33 H 0.110 0.890 34 H 0.082 0.918 35 H 0.114 0.886 36 H 0.066 0.934 37 H 0.055 0.945 38 H 0.362 0.638 39 H 0.256 0.744 40 H 0.058 0.942 41 H 0.067 0.933 42 H 0.043 0.957 43 H 0.082 0.918 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.839 -4.533 -7.353 22.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.158 4.158 3 C -0.139 4.139 4 C -0.175 4.175 5 C 0.298 3.702 6 O -0.471 6.471 7 N -0.342 5.342 8 C -0.008 4.008 9 C -0.186 4.186 10 C 0.074 3.926 11 H 0.066 0.934 12 N -0.391 5.391 13 C -0.348 4.348 14 H 0.080 0.920 15 C -0.254 4.254 16 N -0.636 5.636 17 Si 0.775 3.225 18 H -0.208 1.208 19 H -0.227 1.227 20 H -0.180 1.180 21 C -0.123 4.123 22 H 0.079 0.921 23 C -0.193 4.193 24 C 0.001 3.999 25 H 0.083 0.917 26 H 0.067 0.933 27 H 0.071 0.929 28 H 0.093 0.907 29 H 0.088 0.912 30 H 0.068 0.932 31 H 0.074 0.926 32 H 0.136 0.864 33 H 0.128 0.872 34 H 0.100 0.900 35 H 0.132 0.868 36 H 0.084 0.916 37 H 0.074 0.926 38 H 0.195 0.805 39 H 0.065 0.935 40 H 0.077 0.923 41 H 0.086 0.914 42 H 0.062 0.938 43 H 0.101 0.899 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -21.061 -4.142 -7.466 22.726 hybrid contribution 0.586 0.643 1.303 1.567 sum -20.475 -3.500 -6.163 21.667 Atomic orbital electron populations 1.21782 0.95762 1.02048 1.01625 1.21530 0.96099 0.95232 1.02967 1.21333 0.93032 0.97582 1.01981 1.21799 0.97643 0.91790 1.06238 1.21420 0.81322 0.92925 0.74502 1.90649 1.55790 1.48223 1.52413 1.48301 1.05888 1.07703 1.72330 1.21901 0.90307 0.89805 0.98824 1.22463 0.98392 0.99315 0.98421 1.20417 0.88531 0.92887 0.90809 0.93427 1.42802 1.08479 1.71135 1.16640 1.19007 0.86730 1.28843 1.00228 0.92005 1.25384 0.95678 1.02789 1.01591 1.69863 1.05188 1.54417 1.34085 0.85528 0.77244 0.79009 0.80688 1.20846 1.22686 1.17967 1.21666 0.95774 0.96135 0.98726 0.92089 1.21644 1.00289 0.95243 1.02147 1.21558 0.96908 0.83394 0.98003 0.91744 0.93258 0.92938 0.90739 0.91221 0.93171 0.92614 0.86383 0.87202 0.90021 0.86813 0.91563 0.92650 0.80528 0.93543 0.92317 0.91448 0.93758 0.89931 0.90348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 9.91 71.98 0.71 -1.23 16 2 C -0.12 -1.52 5.93 30.60 0.18 -1.34 16 3 C -0.10 -1.77 4.50 30.60 0.14 -1.63 16 4 C -0.14 -2.22 4.05 29.85 0.12 -2.09 16 5 C 0.51 12.69 7.70 87.66 0.67 13.37 16 6 O -0.59 -19.33 15.40 -3.04 -0.05 -19.38 16 7 N -0.61 -14.72 2.97 -818.81 -2.43 -17.15 16 8 C 0.11 2.38 6.34 86.36 0.55 2.93 16 9 C -0.15 -4.26 5.66 30.67 0.17 -4.09 16 10 C 0.18 6.29 2.19 45.02 0.10 6.39 16 11 H 0.05 1.75 8.08 -2.39 -0.02 1.73 16 12 N -0.75 -33.05 4.21 -322.81 -1.36 -34.41 16 13 C -0.22 -11.79 10.41 84.03 0.87 -10.92 16 14 H 0.06 3.66 8.06 -2.91 -0.02 3.64 16 15 C -0.06 -3.64 5.50 84.86 0.47 -3.17 16 16 N -0.98 -62.10 13.97 21.65 0.30 -61.80 16 17 Si 0.95 45.16 27.73 68.60 1.90 47.06 16 18 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 19 H -0.30 -14.64 7.11 99.48 0.71 -13.93 16 20 H -0.25 -11.06 6.52 99.48 0.65 -10.41 16 21 C -0.10 -3.05 2.46 -10.70 -0.03 -3.08 16 22 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 23 C -0.14 -3.95 9.03 71.98 0.65 -3.30 16 24 C 0.12 3.25 5.72 86.38 0.49 3.74 16 25 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 26 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 27 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.05 1.05 8.10 -2.39 -0.02 1.03 16 31 H 0.06 1.11 8.10 -2.39 -0.02 1.09 16 32 H 0.12 1.36 7.94 -2.39 -0.02 1.34 16 33 H 0.11 1.49 7.70 -2.39 -0.02 1.47 16 34 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.11 1.66 5.95 -2.39 -0.01 1.65 16 36 H 0.07 2.16 8.14 -2.38 -0.02 2.14 16 37 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.36 15.85 5.36 -92.70 -0.50 15.35 16 39 H 0.26 15.49 8.31 -92.71 -0.77 14.72 16 40 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 41 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 42 H 0.04 1.49 7.36 -2.38 -0.02 1.48 16 43 H 0.08 2.30 7.01 -2.38 -0.02 2.28 16 44 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 Total: -1.00 -69.22 344.08 3.87 -65.35 By element: Atomic # 1 Polarization: 24.36 SS G_CDS: 0.39 Total: 24.75 kcal Atomic # 6 Polarization: -9.53 SS G_CDS: 5.11 Total: -4.42 kcal Atomic # 7 Polarization: -109.87 SS G_CDS: -3.49 Total: -113.36 kcal Atomic # 8 Polarization: -19.33 SS G_CDS: -0.05 Total: -19.38 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 1.90 Total: 47.06 kcal Total: -69.22 3.87 -65.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753750690.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.686 kcal (2) G-P(sol) polarization free energy of solvation -69.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds