Wall clock time and date at job start Mon Mar 30 2020 00:44:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52994 * 109.46833 * 2 1 4 4 C 1.53005 * 109.46833 * 179.97438 * 3 2 1 5 5 H 1.08999 * 109.47500 * 304.99999 * 4 3 2 6 6 C 1.52993 * 109.47163 * 65.00452 * 4 3 2 7 7 C 1.53007 * 109.47294 * 185.46180 * 6 4 3 8 8 C 1.50699 * 109.47122 * 185.00397 * 4 3 2 9 9 O 1.21288 * 120.00021 * 275.02979 * 8 4 3 10 10 N 1.34780 * 120.00413 * 95.02140 * 8 4 3 11 11 C 1.46496 * 120.00215 * 175.01479 * 10 8 4 12 12 C 1.53000 * 109.47149 * 180.02562 * 11 10 8 13 13 H 1.09002 * 112.74125 * 55.33505 * 12 11 10 14 14 C 1.53501 * 113.46845 * 186.07740 * 12 11 10 15 15 C 1.53684 * 83.27808 * 140.87238 * 14 12 11 16 16 N 1.47059 * 87.98506 * 333.93196 * 15 14 12 17 17 C 1.36932 * 136.06068 * 207.15033 * 16 15 14 18 18 H 1.08003 * 119.99827 * 179.97438 * 17 16 15 19 19 C 1.38804 * 120.00182 * 359.95035 * 17 16 15 20 20 N 1.31624 * 119.99949 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00490 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46705 * 0.02562 * 21 19 17 23 23 H 1.48498 * 109.47344 * 119.99806 * 21 19 17 24 24 H 1.48497 * 109.47340 * 240.00197 * 21 19 17 25 25 H 1.09004 * 109.46771 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.46889 * 299.99691 * 1 2 3 27 27 H 1.08999 * 109.46785 * 59.99911 * 1 2 3 28 28 H 1.09004 * 109.46751 * 240.00282 * 2 1 3 29 29 H 1.08995 * 109.46902 * 120.00583 * 2 1 3 30 30 H 1.09004 * 109.47222 * 60.00570 * 3 2 1 31 31 H 1.08995 * 109.47853 * 300.00001 * 3 2 1 32 32 H 1.09001 * 109.47290 * 305.46492 * 6 4 3 33 33 H 1.09003 * 109.47502 * 65.46446 * 6 4 3 34 34 H 1.08996 * 109.46860 * 174.91659 * 7 6 4 35 35 H 1.08999 * 109.47010 * 294.91842 * 7 6 4 36 36 H 1.08995 * 109.46598 * 54.92094 * 7 6 4 37 37 H 0.96996 * 119.99269 * 355.02352 * 10 8 4 38 38 H 1.08999 * 109.47274 * 60.00593 * 11 10 8 39 39 H 1.09004 * 109.47496 * 300.00307 * 11 10 8 40 40 H 1.08997 * 114.20197 * 254.49152 * 14 12 11 41 41 H 1.08998 * 114.20407 * 27.31656 * 14 12 11 42 42 H 1.09002 * 113.47329 * 219.14957 * 15 14 12 43 43 H 1.08998 * 113.46363 * 88.71619 * 15 14 12 44 44 H 0.96996 * 120.00146 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9330 0.8532 0.8427 6 6 4.0805 0.8328 -1.3064 7 6 5.6044 0.7074 -1.2497 8 6 4.0723 2.8579 0.1246 9 8 4.1880 3.5492 -0.8653 10 7 4.3927 3.3557 1.3354 11 6 4.9834 4.6919 1.4451 12 6 5.2498 5.0124 2.9172 13 1 5.8698 4.2611 3.4065 14 6 5.7325 6.4505 3.1520 15 6 4.8263 6.3605 4.3900 16 7 4.0339 5.3506 3.6723 17 6 2.7354 4.9167 3.6961 18 1 2.4174 4.1278 3.0305 19 6 1.8279 5.4904 4.5758 20 7 2.2154 6.4519 5.3870 21 14 0.0563 4.8990 4.6078 22 1 -0.1227 3.8178 3.6058 23 1 -0.2675 4.3784 5.9603 24 1 -0.8492 6.0303 4.2831 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 1.6767 1.9563 0.8901 31 1 1.6767 1.9564 -0.8899 32 1 3.6396 -0.1546 -1.4434 33 1 3.7997 1.4751 -2.1411 34 1 5.9599 0.1913 -2.1415 35 1 6.0493 1.7014 -1.2036 36 1 5.8895 0.1402 -0.3637 37 1 4.2324 2.8292 2.1340 38 1 4.2948 5.4286 1.0314 39 1 5.9220 4.7208 0.8916 40 1 6.7952 6.5335 3.3800 41 1 5.3935 7.1639 2.4009 42 1 4.2765 7.2795 4.5933 43 1 5.3334 5.9683 5.2715 44 1 1.5812 6.8530 6.0015 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754497672.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:38 Heat of formation + Delta-G solvation = -12.540505 kcal Electronic energy + Delta-G solvation = -21412.901995 eV Core-core repulsion = 18366.061702 eV Total energy + Delta-G solvation = -3046.840293 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.75882 -38.19921 -36.12199 -33.99378 -32.99997 -32.22158 -29.46326 -28.04003 -27.47924 -24.45669 -23.48560 -22.82780 -21.75828 -20.83709 -19.71598 -19.07808 -17.16828 -16.42463 -15.66757 -15.36842 -15.12437 -14.84122 -14.41629 -13.97988 -13.74171 -13.48749 -13.23883 -13.17935 -12.83532 -12.69835 -12.04403 -11.85007 -11.70793 -11.54307 -11.38256 -11.12882 -11.08519 -10.99211 -10.79983 -10.76097 -10.72503 -10.56218 -10.39403 -9.97702 -9.83471 -9.48165 -9.11071 -8.83196 -8.50091 -6.91189 -5.78541 -3.10982 3.02221 3.36063 3.40808 3.43973 3.62580 4.41481 4.68125 4.79717 4.92361 5.06780 5.16451 5.18938 5.29528 5.37794 5.42807 5.47853 5.56555 5.65426 5.72005 5.73753 5.76146 5.83140 5.88874 5.92213 6.00743 6.11211 6.12171 6.18439 6.23731 6.30777 6.33740 6.35869 6.40659 6.59168 6.73470 6.95733 7.21816 7.38729 7.56602 7.95927 7.98007 8.65175 9.01485 9.68680 10.61690 11.38821 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.014349 B = 0.006516 C = 0.004682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1950.908661 B = 4295.872781 C = 5978.910659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.122 4.122 3 C -0.111 4.111 4 C -0.106 4.106 5 H 0.086 0.914 6 C -0.108 4.108 7 C -0.154 4.154 8 C 0.516 3.484 9 O -0.552 6.552 10 N -0.714 5.714 11 C 0.121 3.879 12 C 0.127 3.873 13 H 0.047 0.953 14 C -0.162 4.162 15 C 0.151 3.849 16 N -0.601 5.601 17 C -0.212 4.212 18 H 0.081 0.919 19 C -0.008 4.008 20 N -0.918 5.918 21 Si 0.907 3.093 22 H -0.279 1.279 23 H -0.291 1.291 24 H -0.290 1.290 25 H 0.052 0.948 26 H 0.056 0.944 27 H 0.053 0.947 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.074 0.926 34 H 0.053 0.947 35 H 0.056 0.944 36 H 0.051 0.949 37 H 0.402 0.598 38 H 0.070 0.930 39 H 0.056 0.944 40 H 0.058 0.942 41 H 0.079 0.921 42 H 0.072 0.928 43 H 0.025 0.975 44 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.229 -11.429 -9.014 15.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.159 4.159 3 C -0.149 4.149 4 C -0.127 4.127 5 H 0.104 0.896 6 C -0.146 4.146 7 C -0.211 4.211 8 C 0.302 3.698 9 O -0.431 6.431 10 N -0.364 5.364 11 C -0.004 4.004 12 C 0.020 3.980 13 H 0.065 0.935 14 C -0.201 4.201 15 C 0.026 3.974 16 N -0.327 5.327 17 C -0.339 4.339 18 H 0.098 0.902 19 C -0.205 4.205 20 N -0.565 5.565 21 Si 0.738 3.262 22 H -0.205 1.205 23 H -0.218 1.218 24 H -0.217 1.217 25 H 0.071 0.929 26 H 0.075 0.925 27 H 0.072 0.928 28 H 0.083 0.917 29 H 0.081 0.919 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.093 0.907 34 H 0.072 0.928 35 H 0.075 0.925 36 H 0.070 0.930 37 H 0.236 0.764 38 H 0.088 0.912 39 H 0.075 0.925 40 H 0.076 0.924 41 H 0.098 0.902 42 H 0.090 0.910 43 H 0.042 0.958 44 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 3.969 -10.928 -9.594 15.074 hybrid contribution -1.055 -0.551 0.715 1.389 sum 2.914 -11.479 -8.879 14.802 Atomic orbital electron populations 1.21781 0.95833 1.01383 1.02157 1.21564 0.95917 0.96399 1.02035 1.21554 0.92458 0.97504 1.03416 1.21389 0.97213 0.93838 1.00268 0.89609 1.21461 0.95864 1.00646 0.96629 1.21800 0.96024 1.02005 1.01279 1.20538 0.77129 0.88910 0.83256 1.90643 1.54184 1.60919 1.37305 1.46045 1.63169 1.18869 1.08337 1.21773 0.97126 0.83539 0.97923 1.22410 0.89941 0.95418 0.90276 0.93531 1.23692 0.98400 0.96573 1.01410 1.22060 0.89322 0.94650 0.91390 1.45669 1.03137 1.41970 1.41931 1.18893 0.82334 1.15911 1.16769 0.90151 1.24772 0.98066 0.99011 0.98606 1.69836 1.33709 1.27635 1.25368 0.86116 0.84900 0.77944 0.77249 1.20455 1.21782 1.21710 0.92886 0.92483 0.92754 0.91744 0.91892 0.91043 0.91176 0.91244 0.90730 0.92764 0.92458 0.92962 0.76381 0.91182 0.92532 0.92363 0.90230 0.90995 0.95754 0.93742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 9.91 37.16 0.37 -1.20 16 2 C -0.12 -1.25 5.70 -26.73 -0.15 -1.41 16 3 C -0.11 -1.43 4.66 -26.73 -0.12 -1.55 16 4 C -0.11 -1.37 2.18 -91.77 -0.20 -1.57 16 5 H 0.09 0.98 8.13 -51.93 -0.42 0.55 16 6 C -0.11 -1.26 5.04 -26.73 -0.13 -1.39 16 7 C -0.15 -1.71 9.65 37.16 0.36 -1.35 16 8 C 0.52 8.67 5.96 -10.98 -0.07 8.61 16 9 O -0.55 -11.11 15.99 5.55 0.09 -11.02 16 10 N -0.71 -12.21 5.40 -60.29 -0.33 -12.54 16 11 C 0.12 2.22 5.53 -4.04 -0.02 2.20 16 12 C 0.13 2.46 4.10 -72.40 -0.30 2.16 16 13 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 14 C -0.16 -2.96 8.04 -26.12 -0.21 -3.17 16 15 C 0.15 3.47 7.40 -8.42 -0.06 3.41 16 16 N -0.60 -14.63 3.65 -176.76 -0.65 -15.28 16 17 C -0.21 -5.66 10.55 -15.06 -0.16 -5.82 16 18 H 0.08 2.07 7.68 -52.48 -0.40 1.66 16 19 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 20 N -0.92 -26.97 11.51 55.49 0.64 -26.33 16 21 Si 0.91 21.94 29.55 -169.99 -5.02 16.92 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 23 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 24 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 25 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.06 0.59 6.45 -51.93 -0.34 0.26 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 31 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.07 0.66 6.33 -51.93 -0.33 0.33 16 33 H 0.07 0.98 7.66 -51.93 -0.40 0.59 16 34 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.06 0.75 7.42 -51.93 -0.39 0.37 16 36 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.40 6.56 8.47 -40.82 -0.35 6.21 16 38 H 0.07 1.49 8.14 -51.93 -0.42 1.06 16 39 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 40 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.08 1.46 8.12 -51.93 -0.42 1.04 16 42 H 0.07 1.85 7.12 -51.93 -0.37 1.48 16 43 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 353.19 15.07 5.32 5.32 Total: -1.00 -31.11 353.19 -8.78 -39.89 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: -8.04 Total: 4.43 kcal Atomic # 6 Polarization: -0.60 SS G_CDS: -0.80 Total: -1.40 kcal Atomic # 7 Polarization: -53.82 SS G_CDS: -0.33 Total: -54.15 kcal Atomic # 8 Polarization: -11.11 SS G_CDS: 0.09 Total: -11.02 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.11 -8.78 -39.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754497672.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.353 kcal (2) G-P(sol) polarization free energy of solvation -31.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds